Clc07G02960 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G02960
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	ClcChr07: 2843410 .. 2843892 (+)
RNA-Seq Expression	Clc07G02960
Synteny	Clc07G02960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCACATTGCTATATAAATTATCCGTCTTTGCCCTTCCATCAATTTCCTCTTAATTTCCCTTCCAACGAAAAACAAAAGAAAGAAAGGGCCACCACGTTTCCATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCCCTGTCTGCTCCGCTGTCCTCCGCCGGTTTCCTCAAAACCACCTTTTCCCATCAGGTAAAAATTCACTCAAATTCTCATTTCTCAAACAAACCCATTTACAAAACAAACAAATACCAAACCAATTAATTTATTCTTGGGTATTTCAGGAAAAACTCACCAGAGACGAGGAAAGTACTACTCCGTCGAGAAGATCGCCGCCGTCAACGACGGCGGATCAATTTGCTCCAAGATTCGATGGGTTAAGATTCATTGAAACTCTTGTCACTGCACATAGATGATAAGCTTTGGATTTGGCAATAAAATGGCCCTCCATCCTTTTTTTTTTT

mRNA sequence

TTTCACATTGCTATATAAATTATCCGTCTTTGCCCTTCCATCAATTTCCTCTTAATTTCCCTTCCAACGAAAAACAAAAGAAAGAAAGGGCCACCACGTTTCCATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCCCTGTCTGCTCCGCTGTCCTCCGCCGGTTTCCTCAAAACCACCTTTTCCCATCAGGAAAAACTCACCAGAGACGAGGAAAGTACTACTCCGTCGAGAAGATCGCCGCCGTCAACGACGGCGGATCAATTTGCTCCAAGATTCGATGGGTTAAGATTCATTGAAACTCTTGTCACTGCACATAGATGATAAGCTTTGGATTTGGCAATAAAATGGCCCTCCATCCTTTTTTTTTTT

Coding sequence (CDS)

ATGAAGAAAACAGGGCTGTTCGCCGCCTCCGTCGCCGCCGCCTCCGCCACCGCCCTGTCTGCTCCGCTGTCCTCCGCCGGTTTCCTCAAAACCACCTTTTCCCATCAGGAAAAACTCACCAGAGACGAGGAAAGTACTACTCCGTCGAGAAGATCGCCGCCGTCAACGACGGCGGATCAATTTGCTCCAAGATTCGATGGGTTAAGATTCATTGAAACTCTTGTCACTGCACATAGATGA

Protein sequence

MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQFAPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Clc07G02960 vs. NCBI nr
Match: XP_038888462.1 (uncharacterized protein LOC120078298 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP SSAG LKTTFSHQE++TRD+E TTPSRRSPPST A+Q
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSAGILKTTFSHQEQVTRDQEITTPSRRSPPSTAAEQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Clc07G02960 vs. NCBI nr
Match: KGN43613.1 (hypothetical protein Csa_020428 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 7.9e-27
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP +S G LKT FS QEK+TRDEESTTP+RRSPPST ADQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Clc07G02960 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP SS G LKTTFSHQEK+   +E T+PSR SPPST ADQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEETSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Clc07G02960 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothetical protein SDJN03_29089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011972.1 hypothetical protein SDJN02_26880 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP SSAG LKTTFSHQEK+   +E T+PSR SPPST  DQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Clc07G02960 vs. NCBI nr
Match: XP_022969313.1 (uncharacterized protein LOC111468357 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP SSAG LKTTFSHQEK+   +E ++PSR SPPST ADQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Clc07G02960 vs. ExPASy TrEMBL
Match: A0A0A0K2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.8e-27
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP +S G LKT FS QEK+TRDEESTTP+RRSPPST ADQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Clc07G02960 vs. ExPASy TrEMBL
Match: A0A6J1GMF4 (uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC111455296 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.0e-25
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP SSAG LKTTFSHQEK+   +E T+PSR SPPST  DQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Clc07G02960 vs. ExPASy TrEMBL
Match: A0A6J1I0M0 (uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTTADQ 60
          MKKTGLFAASVAAASATALSAP SSAG LKTTFSHQEK+   +E ++PSR SPPST ADQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Clc07G02960 vs. ExPASy TrEMBL
Match: A0A5D3C7A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003450 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-24
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFLKTTFSHQEK-LTRDEESTTPSRRSPPSTTAD 60
          MKKTGLFAASVAAASATALSAP SS   LKT FSHQEK + RDEE TTP+RRSPPST +D
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Clc07G02960 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPLSSAGFL---KTTFSHQEKLTRDEESTTPSRRSPPSTT 60
          MKK+G FAASVAAASATA+SAP SS+GFL   K   S  E +   +   + S+R   S++
Sbjct: 1  MKKSGFFAASVAAASATAISAP-SSSGFLCNSKIQLSRDEAVAGKDIENSESQR---SSS 60

Query: 61 ADQFAPRFDGLRFIETLVTAHR 80
          AD+FAPRFDGLRFIETLVTAHR
Sbjct: 61 ADRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Clc07G02960 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 6.1e-09
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MKKTGLFAASVA-AASATALSAPLSSAGFLKTTFSHQEKLTRDEESTTPSRRSPPSTT-- 60
          MKKTG+ AAS++ AASATA+SA  ++      +FS  E     +E+    R+   S+   
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNT---SVSFSSPESNLSRQEAKEKQRKKKGSSEDG 60

Query: 61 -ADQFAPRFDGLRFIETLVTAHR 80
            ++FAPRFDGLRFIETLVTAHR
Sbjct: 61 GDEKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Clc07G02960 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 5.3e-05
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = 0


Query: 58 ADQFAPRFDGLRFIETLVTAHR 80
          +D F PRFDGLRFIETLVTAHR
Sbjct: 41 SDNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of Clc07G02960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888462.1	1.2e-27	89.87	uncharacterized protein LOC120078298 [Benincasa hispida]	[more]
KGN43613.1	7.9e-27	88.61	hypothetical protein Csa_020428 [Cucumis sativus]	[more]
XP_023554654.1	1.3e-24	84.81	uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo]	[more]
XP_022952670.1	1.7e-24	84.81	uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothet...	[more]
XP_022969313.1	2.2e-24	84.81	uncharacterized protein LOC111468357 [Cucurbita maxima]	[more]

BLAST of Clc07G02960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc07G02960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C1	3.8e-27	88.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1	[more]
A0A6J1GMF4	8.0e-25	84.81	uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1I0M0	1.0e-24	84.81	uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357...	[more]
A0A5D3C7A0	1.4e-24	85.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E0CTD2	2.3e-11	62.20	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]

BLAST of Clc07G02960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	6.1e-09	49.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	5.3e-05	86.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..61
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..79
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G02960.1	Clc07G02960.1	mRNA