Clc06G19780 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G19780
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pentatricopeptide repeat-containing protein
Location	ClcChr06: 29721896 .. 29724409 (+)
RNA-Seq Expression	Clc06G19780
Synteny	Clc06G19780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTAAGCTTGAAAAAGGGTGGAAGGCGAAGGATATGGTTGGGTGGTTTTAGGTTACTGCATCGGAGGAGGGAGGGGTACAGGAAGAATACACGGACAGAGGTGAAGATGTTGCTGAAGCAGAGATACTTGGACCGCAAAAGGATTACTTCCGCCCTTCTCGCTACCTCTCCCTCTGCTTCACCAGCGCCCTCTTGGAATTCCAAAGGTTCCACTTTCTTCACTCGTACTTCCTTTCACCTCTTCTTCTATATATATATATACACACACACTATACTTCTTGCAGTTCTCTAATCTCAATACACGATTCCATTTGAACTTATCTTCCAAATCGTCAATCACTCCTCAATTTCATGTGAGTTCGCTGCATTTCGTCTCGATTCCCTACCATATCCTGGATTCATAACGAAATTACTGACTCAAATTCTACTTTAGATTAGAAGCAAATTACGGCAAGTTAATTCAGTATCCCCCTATTCAGATCCGGATATGCTTTTTCCTCTTCTATATCCGTAATCAGTGACATAGATGCTACCGTTGCTATTGAATTTGAATGCCCTTTCACTGCCATATTAACTTATTTCCTCATAAACTCTATTTCAGATTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAGACTCTTCCCCTTCAATTCCAAAACTGCTATTGAAACGCATGCACGGATTATTAAATTTGGATATGGAAACTACCCAACTCTCATCACCTCTCTAGTATCGACTTATCAACGTGCCGGTTGCCTTAATCGGGTCCATCAACTTCTTGATCTACTCTGCTCTAAGCATCTTGATTTAGTTGCAATGAACTTACTCATTGAAAATTTTATGAAAATCGGGGAGTGCAAATTTGCTAAAAAGGTATTTTACAAAATGCCTCACCGTGATGTGGTAACATGGAACTCAATCATTGGAGGTTATGTGAAGAATGCACGGTATGACGAGGCGTTTAGATTCTTTAGACAGATGCTGGACTCAAATATTCAGCCGGACGGATTTACATTTGCTTCCTTATTGAATGCATGTGCTCAGCTCGGAGCTCCAAGTAAGACTCAGTGGGTTCATGCTCTGATTACTCGGAAAAAAATTGAGCTTAATTCTATATTAAGTTGTGCACTCATAGACGCGTACTCAAAGTGTGGTAGCATCCAAATTGCAGAGGAAATGTTTAGTTGCGTCCCTCACAGTGACGTCTCAGTTTGGAATGCGATGATCAAAGGGCTTGCAATTCATGGCCTTGCAATGGATGCATTATCGTTATTCTTGACGATGGAGCGGGAGAATGTTGTGCCTGATGCTGTCACCTTTTTGGGTATTTTAACAGCCTGCAACCATGGTGGTTTAATTGACGAGGGTCGTAGGTATTTTGATTGGATGAAAAGCCGTTATTCAATTCAGCCACAGCTTGAGCATTACGGAGTCATGGTTGATCTGTATAGCCGAGCTGGGTTTCTGGAAGAGGCCTATTCCCTAATCGTGGCAATGCCACTAGAGCCAGATGTTGTCACATGGAGGACGCTTCTGAGTGGTTGTAGAATTTACAGAAATCAAAAACTCGCAGAAGTTGCTATTGCAAATATGTCTCATCGTAAGAGTGGAGATTACGTGTTATTATCAAATATCTATTGTTCTCTCAACAGATGGGAGCATGCAGAAACAGTTAGAAAGATGATGAAAATCAATGGGGTTCGTAAGAATTGTGGAAAAAGCTGGATTGAGTTGGGAGGTACCATTCAAAACTTCAAGTCGGGCGATCGATCACATCCGGAAAGCGATGCAATATACAAATTGCTGTGCAGTTTGATGAAGAGAACTCGGTCAGAGGGATATACGCCTGTGACAGAGTTGGTTTTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTATCATTTCACAGCGAAAAGATAGCATTGGCTTATGCGATCCTGAAAACTAGTCCTGGGGCAAAGATCAGTATATCAAAGAACCTGCGGATCTGTGATGATTGTCATACATGGATAAAACTAGTTTCAAGGGTGCTCTGCAGAACTATAGTAGTGAGGGATCGGATCCGGTTTCATCAATTTGAAGGTGGCATGTGTTCCTGTGGTGATCGTTGGTAATATTATTTATTATATTTTTTCTTACAAAAATTAGTGTAAATACTGAAAACAAACAGTGTTTCTCTTAACGAACATAGGCAGTCATCTTGTATAAAGTGTTTCTCTTAACGAACATAGGCAGTCATCTTGTATAAGTTTGAAGGGTAAAATGGTTATTTTTTAAAAAAACTTGAGGGCAAAATCAAAAGTTGAAAAATTTCCAACATGGTCTTTTTATATATATAATTAATTAATTTTTAGAAGCATGTGTGAAGAAAAATGGTGGATCAGTTTCAAGCCAAATTGTTGAGAATGGATATTATTATGGATAGATTTAGACTAGAGGGCATAATCATCAACTTTATGGCAAATACCACACTGGTGTTCAGATTTTTTGTCACCTCTTCCT

mRNA sequence

ATGTATTTAAGCTTGAAAAAGGGTGGAAGGCGAAGGATATGGTTGGGTGGTTTTAGGTTACTGCATCGGAGGAGGGAGGGGTACAGGAAGAATACACGGACAGAGGTGAAGATGTTGCTGAAGCAGAGATACTTGGACCGCAAAAGGATTACTTCCGCCCTTCTCGCTACCTCTCCCTCTGCTTCACCAGCGCCCTCTTGGAATTCCAAAGATTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAGACTCTTCCCCTTCAATTCCAAAACTGCTATTGAAACGCATGCACGGATTATTAAATTTGGATATGGAAACTACCCAACTCTCATCACCTCTCTAGTATCGACTTATCAACGTGCCGGTTGCCTTAATCGGGTCCATCAACTTCTTGATCTACTCTGCTCTAAGCATCTTGATTTAGTTGCAATGAACTTACTCATTGAAAATTTTATGAAAATCGGGGAGTGCAAATTTGCTAAAAAGGTATTTTACAAAATGCCTCACCGTGATGTGGTAACATGGAACTCAATCATTGGAGGTTATGTGAAGAATGCACGGTATGACGAGGCGTTTAGATTCTTTAGACAGATGCTGGACTCAAATATTCAGCCGGACGGATTTACATTTGCTTCCTTATTGAATGCATGTGCTCAGCTCGGAGCTCCAAGTAAGACTCAGTGGGTTCATGCTCTGATTACTCGGAAAAAAATTGAGCTTAATTCTATATTAAGTTGTGCACTCATAGACGCGTACTCAAAGTGTGGTAGCATCCAAATTGCAGAGGAAATGTTTAGTTGCGTCCCTCACAGTGACGTCTCAGTTTGGAATGCGATGATCAAAGGGCTTGCAATTCATGGCCTTGCAATGGATGCATTATCGTTATTCTTGACGATGGAGCGGGAGAATGTTGTGCCTGATGCTGTCACCTTTTTGGGTATTTTAACAGCCTGCAACCATGGTGGTTTAATTGACGAGGGTCGTAGGTATTTTGATTGGATGAAAAGCCGTTATTCAATTCAGCCACAGCTTGAGCATTACGGAGTCATGGTTGATCTGTATAGCCGAGCTGGGTTTCTGGAAGAGGCCTATTCCCTAATCGTGGCAATGCCACTAGAGCCAGATGTTGTCACATGGAGGACGCTTCTGAGTGGTTGTAGAATTTACAGAAATCAAAAACTCGCAGAAGTTGCTATTGCAAATATGTCTCATCGTAAGAGTGGAGATTACGTGTTATTATCAAATATCTATTGTTCTCTCAACAGATGGGAGCATGCAGAAACAGTTAGAAAGATGATGAAAATCAATGGGGTTCGTAAGAATTGTGGAAAAAGCTGGATTGAGTTGGGAGGTACCATTCAAAACTTCAAGTCGGGCGATCGATCACATCCGGAAAGCGATGCAATATACAAATTGCTGTGCAGTTTGATGAAGAGAACTCGGTCAGAGGGATATACGCCTGTGACAGAGTTGGTTTTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTATCATTTCACAGCGAAAAGATAGCATTGGCTTATGCGATCCTGAAAACTAGTCCTGGGGCAAAGATCAGTATATCAAAGAACCTGCGGATCTGTGATGATTGTCATACATGGATAAAACTAGTTTCAAGGGTGCTCTGCAGAACTATAGTAGTGAGGGATCGGATCCGGTTTCATCAATTTGAAGGTGGCATGTGTTCCTGTGGTGATCGTTGGTAATATTATTTATTATATTTTTTCTTACAAAAATTAGTGTAAATACTGAAAACAAACAGTGTTTCTCTTAACGAACATAGGCAGTCATCTTGTATAAAGTGTTTCTCTTAACGAACATAGGCAGTCATCTTGTATAAGTTTGAAGGGTAAAATGGTTATTTTTTAAAAAAACTTGAGGGCAAAATCAAAAGTTGAAAAATTTCCAACATGGTCTTTTTATATATATAATTAATTAATTTTTAGAAGCATGTGTGAAGAAAAATGGTGGATCAGTTTCAAGCCAAATTGTTGAGAATGGATATTATTATGGATAGATTTAGACTAGAGGGCATAATCATCAACTTTATGGCAAATACCACACTGGTGTTCAGATTTTTTGTCACCTCTTCCT

Coding sequence (CDS)

ATGTATTTAAGCTTGAAAAAGGGTGGAAGGCGAAGGATATGGTTGGGTGGTTTTAGGTTACTGCATCGGAGGAGGGAGGGGTACAGGAAGAATACACGGACAGAGGTGAAGATGTTGCTGAAGCAGAGATACTTGGACCGCAAAAGGATTACTTCCGCCCTTCTCGCTACCTCTCCCTCTGCTTCACCAGCGCCCTCTTGGAATTCCAAAGATTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAGACTCTTCCCCTTCAATTCCAAAACTGCTATTGAAACGCATGCACGGATTATTAAATTTGGATATGGAAACTACCCAACTCTCATCACCTCTCTAGTATCGACTTATCAACGTGCCGGTTGCCTTAATCGGGTCCATCAACTTCTTGATCTACTCTGCTCTAAGCATCTTGATTTAGTTGCAATGAACTTACTCATTGAAAATTTTATGAAAATCGGGGAGTGCAAATTTGCTAAAAAGGTATTTTACAAAATGCCTCACCGTGATGTGGTAACATGGAACTCAATCATTGGAGGTTATGTGAAGAATGCACGGTATGACGAGGCGTTTAGATTCTTTAGACAGATGCTGGACTCAAATATTCAGCCGGACGGATTTACATTTGCTTCCTTATTGAATGCATGTGCTCAGCTCGGAGCTCCAAGTAAGACTCAGTGGGTTCATGCTCTGATTACTCGGAAAAAAATTGAGCTTAATTCTATATTAAGTTGTGCACTCATAGACGCGTACTCAAAGTGTGGTAGCATCCAAATTGCAGAGGAAATGTTTAGTTGCGTCCCTCACAGTGACGTCTCAGTTTGGAATGCGATGATCAAAGGGCTTGCAATTCATGGCCTTGCAATGGATGCATTATCGTTATTCTTGACGATGGAGCGGGAGAATGTTGTGCCTGATGCTGTCACCTTTTTGGGTATTTTAACAGCCTGCAACCATGGTGGTTTAATTGACGAGGGTCGTAGGTATTTTGATTGGATGAAAAGCCGTTATTCAATTCAGCCACAGCTTGAGCATTACGGAGTCATGGTTGATCTGTATAGCCGAGCTGGGTTTCTGGAAGAGGCCTATTCCCTAATCGTGGCAATGCCACTAGAGCCAGATGTTGTCACATGGAGGACGCTTCTGAGTGGTTGTAGAATTTACAGAAATCAAAAACTCGCAGAAGTTGCTATTGCAAATATGTCTCATCGTAAGAGTGGAGATTACGTGTTATTATCAAATATCTATTGTTCTCTCAACAGATGGGAGCATGCAGAAACAGTTAGAAAGATGATGAAAATCAATGGGGTTCGTAAGAATTGTGGAAAAAGCTGGATTGAGTTGGGAGGTACCATTCAAAACTTCAAGTCGGGCGATCGATCACATCCGGAAAGCGATGCAATATACAAATTGCTGTGCAGTTTGATGAAGAGAACTCGGTCAGAGGGATATACGCCTGTGACAGAGTTGGTTTTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTATCATTTCACAGCGAAAAGATAGCATTGGCTTATGCGATCCTGAAAACTAGTCCTGGGGCAAAGATCAGTATATCAAAGAACCTGCGGATCTGTGATGATTGTCATACATGGATAAAACTAGTTTCAAGGGTGCTCTGCAGAACTATAGTAGTGAGGGATCGGATCCGGTTTCATCAATTTGAAGGTGGCATGTGTTCCTGTGGTGATCGTTGGTAA

Protein sequence

MYLSLKKGGRRRIWLGGFRLLHRRREGYRKNTRTEVKMLLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVAIANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW

Homology

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BLAST of Clc06G19780 vs. NCBI nr
Match: XP_038879432.1 (pentatricopeptide repeat-containing protein At5g50990 isoform X1 [Benincasa hispida])

HSP 1 Score: 1018.8 bits (2633), Expect = 1.8e-293
Identity = 490/539 (90.91%), Postives = 515/539 (95.55%), Query Frame = 0


Query: 38  MLLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHA 97
           MLLKQRYLDR+RITSALLA  P A   P+WNSKDYQTL+RVLEACRL P +SKT IETHA
Sbjct: 1   MLLKQRYLDRRRITSALLANYPPALSVPAWNSKDYQTLFRVLEACRLVPLSSKTVIETHA 60

Query: 98  RIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGEC 157
           RIIKFGYG+YP LITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLV MNLLIENF K+GEC
Sbjct: 61  RIIKFGYGSYPALITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVEMNLLIENFTKVGEC 120

Query: 158 KFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNAC 217
           KFA +VFYKMP+RDVVTWNSIIGG VKNA YDEAFRFFRQML+SNIQPDGFTFAS+LNAC
Sbjct: 121 KFANEVFYKMPYRDVVTWNSIIGGCVKNAHYDEAFRFFRQMLNSNIQPDGFTFASVLNAC 180

Query: 218 AQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWN 277
           AQLG PS TQWVHAL+T+KKIELNSILSCALIDAYSKCGSIQIA+EMFSCVPHSDVSVWN
Sbjct: 181 AQLGTPSNTQWVHALMTQKKIELNSILSCALIDAYSKCGSIQIAKEMFSCVPHSDVSVWN 240

Query: 278 AMIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSR 337
           AMIKGLAIHGLA DALSLFL MERENV+PDAVTFLGILTACNHGGLID+GRRYF+WM+SR
Sbjct: 241 AMIKGLAIHGLATDALSLFLMMERENVLPDAVTFLGILTACNHGGLIDQGRRYFEWMRSR 300

Query: 338 YSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEV 397
           YSIQPQLEHYGV+VDLYSRAGFLEEAYSLIVAMP+EPDVVTWRTLLSGCRIYRNQ+LAEV
Sbjct: 301 YSIQPQLEHYGVLVDLYSRAGFLEEAYSLIVAMPIEPDVVTWRTLLSGCRIYRNQELAEV 360

Query: 398 AIANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFK 457
           AI NMSHRKSGDYVLLSNIYCSLN+WEHA TVRKMMKINGVRK CGKSWIELGGTIQNFK
Sbjct: 361 AITNMSHRKSGDYVLLSNIYCSLNKWEHAATVRKMMKINGVRKKCGKSWIELGGTIQNFK 420

Query: 458 SGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYA 517
           SGDRSHPESDA+Y++LCSLMKRTRSEGY PVTELVFMDISEEEKEENLSFHSEK+ALAYA
Sbjct: 421 SGDRSHPESDAVYRVLCSLMKRTRSEGYMPVTELVFMDISEEEKEENLSFHSEKVALAYA 480

Query: 518 ILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           ILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCR IVVRDRIRFHQFEGGMCSCGDRW
Sbjct: 481 ILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRAIVVRDRIRFHQFEGGMCSCGDRW 539

[Close]

BLAST of Clc06G19780 vs. NCBI nr
Match: TYJ96962.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 971.8 bits (2511), Expect = 2.5e-279
Identity = 479/540 (88.70%), Postives = 499/540 (92.41%), Query Frame = 0


Query: 37   KMLLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETH 96
            +++LKQRYLD +RIT ALLATS SA PA   N  DYQTL+RVLEACRLFP NSKT IETH
Sbjct: 603  EVMLKQRYLDCRRITCALLATSASALPAAPSNFTDYQTLHRVLEACRLFPMNSKTVIETH 662

Query: 97   ARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGE 156
            ARIIKFGYGNYPTLI SLVSTYQ  GCLNRVH+LLD+LCSKHLDLVAMNLLI NFMKIGE
Sbjct: 663  ARIIKFGYGNYPTLIASLVSTYQYVGCLNRVHRLLDILCSKHLDLVAMNLLIGNFMKIGE 722

Query: 157  CKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNA 216
            CKFAKKVFYKMP RDVVTWNSIIGG VKNARYDEAFRFFRQML SNIQPDGFTFASLLNA
Sbjct: 723  CKFAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASLLNA 782

Query: 217  CAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVW 276
            CAQLGAPS T WV A +T+KKIELNS+LSCALIDAYSKCGSIQIA+E+FS VPHSD SVW
Sbjct: 783  CAQLGAPSNTHWVRAQMTQKKIELNSLLSCALIDAYSKCGSIQIAKEIFSNVPHSDTSVW 842

Query: 277  NAMIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKS 336
            N MIKGLAIHGLAMDALSLFL ME ENV+PDA+TFLGILTACNHGGLID GRRYF+ M+S
Sbjct: 843  NVMIKGLAIHGLAMDALSLFLRMEHENVLPDAITFLGILTACNHGGLIDHGRRYFELMRS 902

Query: 337  RYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAE 396
            RYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIV MPLEPDVVTWRTLLSGC+IY+N KLAE
Sbjct: 903  RYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPLEPDVVTWRTLLSGCKIYKNHKLAE 962

Query: 397  VAIANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNF 456
            VAIANMSHRKSGDYVLLSNIYCSLNRWE AETVRKMMKIN VRK  GKSWIELGGT Q F
Sbjct: 963  VAIANMSHRKSGDYVLLSNIYCSLNRWEEAETVRKMMKINRVRKKRGKSWIELGGTTQYF 1022

Query: 457  KSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAY 516
            KSGDR HPESDAI K+LCSLMKRTRSEGY PVTELVFMDISEEEKEENLSFHSEK+ALAY
Sbjct: 1023 KSGDRLHPESDAIDKVLCSLMKRTRSEGYMPVTELVFMDISEEEKEENLSFHSEKMALAY 1082

Query: 517  AILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 576
            AILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCR IVVRDRIRFHQFEGGMCSCGDRW
Sbjct: 1083 AILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 1142

[Close]

BLAST of Clc06G19780 vs. NCBI nr
Match: XP_008443769.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis melo] >XP_008443770.1 PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis melo] >XP_008443771.1 PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis melo] >XP_008443772.1 PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis melo] >XP_016899836.1 PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis melo] >XP_016899837.1 PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis melo] >KAA0038433.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 967.6 bits (2500), Expect = 4.7e-278
Identity = 477/538 (88.66%), Postives = 496/538 (92.19%), Query Frame = 0


Query: 39  LLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHAR 98
           +LKQRYLD +RIT ALLATS SA PA   N  DYQTL+RVLEACRLFP NSKT IETHAR
Sbjct: 1   MLKQRYLDCRRITCALLATSASALPAAPSNFTDYQTLHRVLEACRLFPMNSKTVIETHAR 60

Query: 99  IIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECK 158
           IIKFGYGNYPTLI SLVSTYQ  GCLNRVH+LLD+LCSKHLDLVAMNLLI NFMKIGECK
Sbjct: 61  IIKFGYGNYPTLIASLVSTYQYVGCLNRVHRLLDILCSKHLDLVAMNLLIGNFMKIGECK 120

Query: 159 FAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNACA 218
           FAKKVFYKMP RDVVTWNSIIGG VKNARYDEAFRFFRQML SNIQPDGFTFASLLNACA
Sbjct: 121 FAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASLLNACA 180

Query: 219 QLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNA 278
           QLGAPS T WV A +T+KKIELNS+LSCALIDAYSKCGSIQIA+E+FS VPHSD SVWN 
Sbjct: 181 QLGAPSNTHWVRAQMTQKKIELNSLLSCALIDAYSKCGSIQIAKEIFSNVPHSDTSVWNV 240

Query: 279 MIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRY 338
           MIKGLAIHGLAMDALSLFL ME ENV+PDA+TFLGILTACNHGGLID GRRYF+ M+SRY
Sbjct: 241 MIKGLAIHGLAMDALSLFLRMEHENVLPDAITFLGILTACNHGGLIDHGRRYFELMRSRY 300

Query: 339 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVA 398
           SIQPQLEHYGVMVDLYSRAGFLEEAYSLIV MP+EPDVVTWRTLLSGC+IY+N KLAEVA
Sbjct: 301 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCKIYKNHKLAEVA 360

Query: 399 IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKS 458
           IANMSH KSGDYVLLSNIYCSLNRWE AETVRKMMKIN VRK  GKSWIELGGT Q FKS
Sbjct: 361 IANMSHCKSGDYVLLSNIYCSLNRWEEAETVRKMMKINRVRKKRGKSWIELGGTTQYFKS 420

Query: 459 GDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAI 518
           GDR HPESDAI K+LCSLMKRTRSEGY PVTELVFMDISEEEKEENLSFHSEK+ALAYAI
Sbjct: 421 GDRLHPESDAIDKVLCSLMKRTRSEGYMPVTELVFMDISEEEKEENLSFHSEKMALAYAI 480

Query: 519 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCR IVVRDRIRFHQFEGGMCSCGDRW
Sbjct: 481 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 538

[Close]

BLAST of Clc06G19780 vs. NCBI nr
Match: XP_011660258.1 (pentatricopeptide repeat-containing protein At5g50990 isoform X1 [Cucumis sativus] >XP_011660259.1 pentatricopeptide repeat-containing protein At5g50990 isoform X1 [Cucumis sativus])

HSP 1 Score: 964.5 bits (2492), Expect = 4.0e-277
Identity = 473/538 (87.92%), Postives = 497/538 (92.38%), Query Frame = 0


Query: 39  LLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHAR 98
           +LKQRYLD +RIT ALLATS S  PA   NSKDYQ+LYRVLEACRLF  NSKT IETHAR
Sbjct: 1   MLKQRYLDCRRITFALLATSASGLPAAPSNSKDYQSLYRVLEACRLFHMNSKTVIETHAR 60

Query: 99  IIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECK 158
           IIKFGYGNYPTLI SLVSTYQR GCLNRVHQLLD+LCSK LDLVAMNLLI NFMKIGECK
Sbjct: 61  IIKFGYGNYPTLIASLVSTYQRVGCLNRVHQLLDILCSKQLDLVAMNLLIGNFMKIGECK 120

Query: 159 FAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNACA 218
           FAKKVFYKMP RDVVTWNSIIGG VKNARYDEAFRFFRQML SNIQPDGFTFAS+LNACA
Sbjct: 121 FAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASILNACA 180

Query: 219 QLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNA 278
           QLGAPS T WVHA +T+KKIELNS+L+CALIDAYSKCGSIQIA+E+FS +PHSD SVWN 
Sbjct: 181 QLGAPSNTHWVHAQMTQKKIELNSLLTCALIDAYSKCGSIQIAKEIFSNIPHSDTSVWNV 240

Query: 279 MIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRY 338
           MIKGLAIHGLAMDALSLFL ME E+V+PDA+TFLG+LTACNHG LID GRRYF+ MKS Y
Sbjct: 241 MIKGLAIHGLAMDALSLFLRMEHESVLPDAITFLGVLTACNHGCLIDHGRRYFELMKSHY 300

Query: 339 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVA 398
           SIQPQLEHYGVMVDLYSRAGFLEEAYSLIV MP+EPDVVTWRTLLSGCRIY+N KLAEVA
Sbjct: 301 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCRIYKNHKLAEVA 360

Query: 399 IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKS 458
           IANMS RKSGDYVLLSNIYCSLNRW+ AETVRKMMKIN VRK  GKSWIELGGTIQ+FKS
Sbjct: 361 IANMSQRKSGDYVLLSNIYCSLNRWKEAETVRKMMKINRVRKKRGKSWIELGGTIQHFKS 420

Query: 459 GDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAI 518
           GDR HPESDAI K+LCSLMKRTR+EGY PVTELVFMDISEEEKEENLSFHSEK+ALAYAI
Sbjct: 421 GDRLHPESDAIEKVLCSLMKRTRTEGYMPVTELVFMDISEEEKEENLSFHSEKMALAYAI 480

Query: 519 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCR IVVRDRIRFHQFEGGMCSCGDRW
Sbjct: 481 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 538

[Close]

BLAST of Clc06G19780 vs. NCBI nr
Match: XP_023516965.1 (pentatricopeptide repeat-containing protein At5g50990 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 931.0 bits (2405), Expect = 4.9e-267
Identity = 469/629 (74.56%), Postives = 514/629 (81.72%), Query Frame = 0


Query: 18  FRLLHRRREGYRKNTRTEVKMLLKQRYLDRKRITSALLATSPSASPAP------------ 77
           FR L+R R G       ++KML KQRYLDR+RITSALLATS  A P P            
Sbjct: 8   FRSLYRCRRG-------KLKMLQKQRYLDRQRITSALLATSAYALPGPLRIPKVPLSSLL 67

Query: 78  -------------------------------------------SWNSKD----------- 137
                                                       WNS +           
Sbjct: 68  PFTSSPIHVHYTSCASLPNPLPLLNFMSIRCICFLPPSPPSSIPWNSNELEDANSTSKFT 127

Query: 138 ----YQTLYRVLEACRLFPFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRV 197
               YQTLYRVLEACRL P NSKTA ETHAR+IKFGYGNYPTL+TSLVS YQRA CLNRV
Sbjct: 128 VKAGYQTLYRVLEACRLSPSNSKTASETHARMIKFGYGNYPTLVTSLVSAYQRADCLNRV 187

Query: 198 HQLLDLLCSKHLDLVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNAR 257
           HQLL+LLCSKHLDLVAMNL I+NFMKIGECK AK+VF KMP+RDVVTWNSIIGG VKNAR
Sbjct: 188 HQLLNLLCSKHLDLVAMNLFIDNFMKIGECKLAKRVFDKMPYRDVVTWNSIIGGCVKNAR 247

Query: 258 YDEAFRFFRQMLDSNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCA 317
           Y+EAF+FFRQML+SNIQPDGFTFAS+LNACAQLGAPS TQWVHAL+T+KKIELNSILSCA
Sbjct: 248 YEEAFKFFRQMLNSNIQPDGFTFASVLNACAQLGAPSNTQWVHALMTQKKIELNSILSCA 307

Query: 318 LIDAYSKCGSIQIAEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTMERENVVPD 377
           LIDAYSKCGSIQIA+E+FS VP S++SVWNAMIKGLAIHGL+MDALS+F  MERENV+PD
Sbjct: 308 LIDAYSKCGSIQIAKEIFSSVPRSNISVWNAMIKGLAIHGLSMDALSVFWMMERENVLPD 367

Query: 378 AVTFLGILTACNHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLI 437
           AVTFLGILTACNHGGLI++GRR+FDWMK+RYSIQPQLEHYGVMVDLYSRAGFLEEAYS+I
Sbjct: 368 AVTFLGILTACNHGGLIEQGRRFFDWMKNRYSIQPQLEHYGVMVDLYSRAGFLEEAYSII 427

Query: 438 VAMPLEPDVVTWRTLLSGCRIYRNQKLAEVAIANMSHRKSGDYVLLSNIYCSLNRWEHAE 497
           VAMP+E DVVTWR LLSGCRIYRNQ+LAEVAIANMSHR SGDYVLLSN YCSLNRWEHAE
Sbjct: 428 VAMPIEADVVTWRALLSGCRIYRNQELAEVAIANMSHRGSGDYVLLSNTYCSLNRWEHAE 487

Query: 498 TVRKMMKINGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTP 557
            VR+ MK NGVRK+CGKSWIELGG+IQ+FKSGDRSHPESDA+YK++  LMKR+RSEGY P
Sbjct: 488 RVRERMKSNGVRKSCGKSWIELGGSIQSFKSGDRSHPESDAVYKVVWRLMKRSRSEGYMP 547

Query: 558 VTELVFMDISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVS 577
           VT+LV MDISEEEKEENLS+HSEK+ALAYAILKTSPGAKISISKNLR+CDDCH WIKLVS
Sbjct: 548 VTDLVLMDISEEEKEENLSYHSEKLALAYAILKTSPGAKISISKNLRMCDDCHRWIKLVS 607

[Close]

BLAST of Clc06G19780 vs. ExPASy Swiss-Prot
Match: Q9FI49 (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 575.9 bits (1483), Expect = 5.2e-163
Identity = 278/518 (53.67%), Postives = 373/518 (72.01%), Query Frame = 0


Query: 60  SASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQ 119
           S S + + N  D+  L +VLE+C+  P NSK  ++ HA+I K GYG YP+L+ S V+ Y+
Sbjct: 18  SLSSSSASNLTDHGMLKQVLESCKA-PSNSKCVLQAHAQIFKLGYGTYPSLLVSTVAAYR 77

Query: 120 RAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSII 179
           R        +LL    S    +  +NL+IE+ MKIGE   AKKV      ++V+TWN +I
Sbjct: 78  RCNRSYLARRLLLWFLSLSPGVCNINLIIESLMKIGESGLAKKVLRNASDQNVITWNLMI 137

Query: 180 GGYVKNARYDEAFRFFRQMLD-SNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKI 239
           GGYV+N +Y+EA +  + ML  ++I+P+ F+FAS L ACA+LG     +WVH+L+    I
Sbjct: 138 GGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGI 197

Query: 240 ELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLT 299
           ELN+ILS AL+D Y+KCG I  + E+F  V  +DVS+WNAMI G A HGLA +A+ +F  
Sbjct: 198 ELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSE 257

Query: 300 MERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAG 359
           ME E+V PD++TFLG+LT C+H GL++EG+ YF  M  R+SIQP+LEHYG MVDL  RAG
Sbjct: 258 MEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAG 317

Query: 360 FLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVAIANMSHRKSGDYVLLSNIYC 419
            ++EAY LI +MP+EPDVV WR+LLS  R Y+N +L E+AI N+S  KSGDYVLLSNIY 
Sbjct: 318 RVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKSGDYVLLSNIYS 377

Query: 420 SLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMK 479
           S  +WE A+ VR++M   G+RK  GKSW+E GG I  FK+GD SH E+ AIYK+L  L++
Sbjct: 378 STKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQ 437

Query: 480 RTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDD 539
           +T+S+G+   T+LV MD+SEEEKEENL++HSEK+ALAY ILK+SPG +I I KN+R+C D
Sbjct: 438 KTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSD 497

Query: 540 CHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           CH WIK VS++L R I++RDRIRFH+FE G+CSC D W
Sbjct: 498 CHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534

[Close]

BLAST of Clc06G19780 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 3.8e-113
Identity = 209/501 (41.72%), Postives = 312/501 (62.28%), Query Frame = 0


Query: 86  PFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMN 145
           P +      THA+I+ FG    P + TSL++ Y   G L    ++ D   SK  DL A N
Sbjct: 75  PLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSK--DLPAWN 134

Query: 146 LLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQML-----D 205
            ++  + K G    A+K+F +MP R+V++W+ +I GYV   +Y EA   FR+M      +
Sbjct: 135 SVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNE 194

Query: 206 SNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQI 265
           + ++P+ FT +++L+AC +LGA  + +WVHA I +  +E++ +L  ALID Y+KCGS++ 
Sbjct: 195 AFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLER 254

Query: 266 AEEMFSCV-PHSDVSVWNAMIKGLAIHGLAMDALSLFLTM-ERENVVPDAVTFLGILTAC 325
           A+ +F+ +    DV  ++AMI  LA++GL  +   LF  M   +N+ P++VTF+GIL AC
Sbjct: 255 AKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGAC 314

Query: 326 NHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVT 385
            H GLI+EG+ YF  M   + I P ++HYG MVDLY R+G ++EA S I +MP+EPDV+ 
Sbjct: 315 VHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLI 374

Query: 386 WRTLLSGCRIYRNQKLAEVA---IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKI 445
           W +LLSG R+  + K  E A   +  +    SG YVLLSN+Y    RW   + +R  M++
Sbjct: 375 WGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEV 434

Query: 446 NGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMD 505
            G+ K  G S++E+ G +  F  GD S  ES+ IY +L  +M+R R  GY   T+ V +D
Sbjct: 435 KGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLD 494

Query: 506 ISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIV 565
           ++E++KE  LS+HSEK+A+A+ ++KT PG  + I KNLRIC DCH  +K++S++  R IV
Sbjct: 495 LNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIV 554

Query: 566 VRDRIRFHQFEGGMCSCGDRW 577
           VRD  RFH F  G CSC D W
Sbjct: 555 VRDCNRFHHFRDGSCSCRDFW 573

[Close]

BLAST of Clc06G19780 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 5.1e-110
Identity = 202/498 (40.56%), Postives = 298/498 (59.84%), Query Frame = 0


Query: 94  ETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLL-------DLLC-----SKHLDL 153
           + H   +K+G+G    ++++LV  Y   G +     L        D++       +  ++
Sbjct: 149 QIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEI 208

Query: 154 VAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDS 213
           V  N++I+ +M++G+CK A+ +F KM  R VV+WN++I GY  N  + +A   FR+M   
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG 268

Query: 214 NIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIA 273
           +I+P+  T  S+L A ++LG+    +W+H       I ++ +L  ALID YSKCG I+ A
Sbjct: 269 DIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328

Query: 274 EEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHG 333
             +F  +P  +V  W+AMI G AIHG A DA+  F  M +  V P  V ++ +LTAC+HG
Sbjct: 329 IHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388

Query: 334 GLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRT 393
           GL++EGRRYF  M S   ++P++EHYG MVDL  R+G L+EA   I+ MP++PD V W+ 
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448

Query: 394 LLSGCRIYRNQKLAE-VA--IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGV 453
           LL  CR+  N ++ + VA  + +M    SG YV LSN+Y S   W     +R  MK   +
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508

Query: 454 RKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISE 513
           RK+ G S I++ G +  F   D SHP++  I  +L  +  + R  GY P+T  V +++ E
Sbjct: 509 RKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEE 568

Query: 514 EEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRD 573
           E+KE  L +HSEKIA A+ ++ TSPG  I I KNLRIC+DCH+ IKL+S+V  R I VRD
Sbjct: 569 EDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRD 628

Query: 574 RIRFHQFEGGMCSCGDRW 577
           R RFH F+ G CSC D W
Sbjct: 629 RKRFHHFQDGSCSCMDYW 646

[Close]

BLAST of Clc06G19780 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 399.1 bits (1024), Expect = 8.8e-110
Identity = 194/440 (44.09%), Postives = 281/440 (63.86%), Query Frame = 0


Query: 141 LVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLD 200
           +   N L+  +   G+   A KVF KMP +D+V WNS+I G+ +N + +EA   + +M  
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215

Query: 201 SNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQI 260
             I+PDGFT  SLL+ACA++GA +  + VH  + +  +  N   S  L+D Y++CG ++ 
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275

Query: 261 AEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTME-RENVVPDAVTFLGILTACN 320
           A+ +F  +   +   W ++I GLA++G   +A+ LF  ME  E ++P  +TF+GIL AC+
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335

Query: 321 HGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTW 380
           H G++ EG  YF  M+  Y I+P++EH+G MVDL +RAG +++AY  I +MP++P+VV W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395

Query: 381 RTLLSGCRIYRNQKLAEVA---IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKIN 440
           RTLL  C ++ +  LAE A   I  +    SGDYVLLSN+Y S  RW   + +RK M  +
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455

Query: 441 GVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDI 500
           GV+K  G S +E+G  +  F  GD+SHP+SDAIY  L  +  R RSEGY P    V++D+
Sbjct: 456 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 515

Query: 501 SEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVV 560
            EEEKE  + +HSEKIA+A+ ++ T   + I++ KNLR+C DCH  IKLVS+V  R IVV
Sbjct: 516 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 575

Query: 561 RDRIRFHQFEGGMCSCGDRW 577
           RDR RFH F+ G CSC D W
Sbjct: 576 RDRSRFHHFKNGSCSCQDYW 595

[Close]

BLAST of Clc06G19780 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.5e-109
Identity = 200/509 (39.29%), Postives = 304/509 (59.72%), Query Frame = 0


Query: 74  TLYRVLEAC-RLFPFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLD 133
           T   +L+AC  L  F   T I  HA+I K GY N    + SL+++Y   G     H L D
Sbjct: 117 TFPSLLKACSNLSAFEETTQI--HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFD 176

Query: 134 LLCSKHLDLVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAF 193
            +     D V+ N +I+ ++K G+   A  +F KM  ++ ++W ++I GYV+     EA 
Sbjct: 177 RI--PEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEAL 236

Query: 194 RFFRQMLDSNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAY 253
           + F +M +S+++PD  + A+ L+ACAQLGA  + +W+H+ + + +I ++S+L C LID Y
Sbjct: 237 QLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMY 296

Query: 254 SKCGSIQIAEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTMERENVVPDAVTFL 313
           +KCG ++ A E+F  +    V  W A+I G A HG   +A+S F+ M++  + P+ +TF 
Sbjct: 297 AKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 356

Query: 314 GILTACNHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPL 373
            +LTAC++ GL++EG+  F  M+  Y+++P +EHYG +VDL  RAG L+EA   I  MPL
Sbjct: 357 AVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPL 416

Query: 374 EPDVVTWRTLLSGCRIYRN----QKLAEVAIANMSHRKSGDYVLLSNIYCSLNRWEHAET 433
           +P+ V W  LL  CRI++N    +++ E+ IA +     G YV  +NI+    +W+ A  
Sbjct: 417 KPNAVIWGALLKACRIHKNIELGEEIGEILIA-IDPYHGGRYVHKANIHAMDKKWDKAAE 476

Query: 434 VRKMMKINGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPV 493
            R++MK  GV K  G S I L GT   F +GDRSHPE + I      + ++    GY P 
Sbjct: 477 TRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPE 536

Query: 494 TELVFMD-ISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVS 553
            E + +D + ++E+E  +  HSEK+A+ Y ++KT PG  I I KNLR+C DCH   KL+S
Sbjct: 537 LEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLIS 596

Query: 554 RVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           ++  R IV+RDR RFH F  G CSCGD W
Sbjct: 597 KIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620

[Close]

BLAST of Clc06G19780 vs. ExPASy TrEMBL
Match: A0A5D3BAU8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00030 PE=3 SV=1)

HSP 1 Score: 971.8 bits (2511), Expect = 1.2e-279
Identity = 479/540 (88.70%), Postives = 499/540 (92.41%), Query Frame = 0


Query: 37   KMLLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETH 96
            +++LKQRYLD +RIT ALLATS SA PA   N  DYQTL+RVLEACRLFP NSKT IETH
Sbjct: 603  EVMLKQRYLDCRRITCALLATSASALPAAPSNFTDYQTLHRVLEACRLFPMNSKTVIETH 662

Query: 97   ARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGE 156
            ARIIKFGYGNYPTLI SLVSTYQ  GCLNRVH+LLD+LCSKHLDLVAMNLLI NFMKIGE
Sbjct: 663  ARIIKFGYGNYPTLIASLVSTYQYVGCLNRVHRLLDILCSKHLDLVAMNLLIGNFMKIGE 722

Query: 157  CKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNA 216
            CKFAKKVFYKMP RDVVTWNSIIGG VKNARYDEAFRFFRQML SNIQPDGFTFASLLNA
Sbjct: 723  CKFAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASLLNA 782

Query: 217  CAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVW 276
            CAQLGAPS T WV A +T+KKIELNS+LSCALIDAYSKCGSIQIA+E+FS VPHSD SVW
Sbjct: 783  CAQLGAPSNTHWVRAQMTQKKIELNSLLSCALIDAYSKCGSIQIAKEIFSNVPHSDTSVW 842

Query: 277  NAMIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKS 336
            N MIKGLAIHGLAMDALSLFL ME ENV+PDA+TFLGILTACNHGGLID GRRYF+ M+S
Sbjct: 843  NVMIKGLAIHGLAMDALSLFLRMEHENVLPDAITFLGILTACNHGGLIDHGRRYFELMRS 902

Query: 337  RYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAE 396
            RYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIV MPLEPDVVTWRTLLSGC+IY+N KLAE
Sbjct: 903  RYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPLEPDVVTWRTLLSGCKIYKNHKLAE 962

Query: 397  VAIANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNF 456
            VAIANMSHRKSGDYVLLSNIYCSLNRWE AETVRKMMKIN VRK  GKSWIELGGT Q F
Sbjct: 963  VAIANMSHRKSGDYVLLSNIYCSLNRWEEAETVRKMMKINRVRKKRGKSWIELGGTTQYF 1022

Query: 457  KSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAY 516
            KSGDR HPESDAI K+LCSLMKRTRSEGY PVTELVFMDISEEEKEENLSFHSEK+ALAY
Sbjct: 1023 KSGDRLHPESDAIDKVLCSLMKRTRSEGYMPVTELVFMDISEEEKEENLSFHSEKMALAY 1082

Query: 517  AILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 576
            AILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCR IVVRDRIRFHQFEGGMCSCGDRW
Sbjct: 1083 AILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 1142

[Close]

BLAST of Clc06G19780 vs. ExPASy TrEMBL
Match: A0A1S4DV22 (pentatricopeptide repeat-containing protein At5g50990 OS=Cucumis melo OX=3656 GN=LOC103487281 PE=3 SV=1)

HSP 1 Score: 967.6 bits (2500), Expect = 2.3e-278
Identity = 477/538 (88.66%), Postives = 496/538 (92.19%), Query Frame = 0


Query: 39  LLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHAR 98
           +LKQRYLD +RIT ALLATS SA PA   N  DYQTL+RVLEACRLFP NSKT IETHAR
Sbjct: 1   MLKQRYLDCRRITCALLATSASALPAAPSNFTDYQTLHRVLEACRLFPMNSKTVIETHAR 60

Query: 99  IIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECK 158
           IIKFGYGNYPTLI SLVSTYQ  GCLNRVH+LLD+LCSKHLDLVAMNLLI NFMKIGECK
Sbjct: 61  IIKFGYGNYPTLIASLVSTYQYVGCLNRVHRLLDILCSKHLDLVAMNLLIGNFMKIGECK 120

Query: 159 FAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNACA 218
           FAKKVFYKMP RDVVTWNSIIGG VKNARYDEAFRFFRQML SNIQPDGFTFASLLNACA
Sbjct: 121 FAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASLLNACA 180

Query: 219 QLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNA 278
           QLGAPS T WV A +T+KKIELNS+LSCALIDAYSKCGSIQIA+E+FS VPHSD SVWN 
Sbjct: 181 QLGAPSNTHWVRAQMTQKKIELNSLLSCALIDAYSKCGSIQIAKEIFSNVPHSDTSVWNV 240

Query: 279 MIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRY 338
           MIKGLAIHGLAMDALSLFL ME ENV+PDA+TFLGILTACNHGGLID GRRYF+ M+SRY
Sbjct: 241 MIKGLAIHGLAMDALSLFLRMEHENVLPDAITFLGILTACNHGGLIDHGRRYFELMRSRY 300

Query: 339 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVA 398
           SIQPQLEHYGVMVDLYSRAGFLEEAYSLIV MP+EPDVVTWRTLLSGC+IY+N KLAEVA
Sbjct: 301 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCKIYKNHKLAEVA 360

Query: 399 IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKS 458
           IANMSH KSGDYVLLSNIYCSLNRWE AETVRKMMKIN VRK  GKSWIELGGT Q FKS
Sbjct: 361 IANMSHCKSGDYVLLSNIYCSLNRWEEAETVRKMMKINRVRKKRGKSWIELGGTTQYFKS 420

Query: 459 GDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAI 518
           GDR HPESDAI K+LCSLMKRTRSEGY PVTELVFMDISEEEKEENLSFHSEK+ALAYAI
Sbjct: 421 GDRLHPESDAIDKVLCSLMKRTRSEGYMPVTELVFMDISEEEKEENLSFHSEKMALAYAI 480

Query: 519 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCR IVVRDRIRFHQFEGGMCSCGDRW
Sbjct: 481 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 538

[Close]

BLAST of Clc06G19780 vs. ExPASy TrEMBL
Match: A0A5A7T674 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003330 PE=3 SV=1)

HSP 1 Score: 967.6 bits (2500), Expect = 2.3e-278
Identity = 477/538 (88.66%), Postives = 496/538 (92.19%), Query Frame = 0


Query: 39  LLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHAR 98
           +LKQRYLD +RIT ALLATS SA PA   N  DYQTL+RVLEACRLFP NSKT IETHAR
Sbjct: 1   MLKQRYLDCRRITCALLATSASALPAAPSNFTDYQTLHRVLEACRLFPMNSKTVIETHAR 60

Query: 99  IIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECK 158
           IIKFGYGNYPTLI SLVSTYQ  GCLNRVH+LLD+LCSKHLDLVAMNLLI NFMKIGECK
Sbjct: 61  IIKFGYGNYPTLIASLVSTYQYVGCLNRVHRLLDILCSKHLDLVAMNLLIGNFMKIGECK 120

Query: 159 FAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNACA 218
           FAKKVFYKMP RDVVTWNSIIGG VKNARYDEAFRFFRQML SNIQPDGFTFASLLNACA
Sbjct: 121 FAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASLLNACA 180

Query: 219 QLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNA 278
           QLGAPS T WV A +T+KKIELNS+LSCALIDAYSKCGSIQIA+E+FS VPHSD SVWN 
Sbjct: 181 QLGAPSNTHWVRAQMTQKKIELNSLLSCALIDAYSKCGSIQIAKEIFSNVPHSDTSVWNV 240

Query: 279 MIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRY 338
           MIKGLAIHGLAMDALSLFL ME ENV+PDA+TFLGILTACNHGGLID GRRYF+ M+SRY
Sbjct: 241 MIKGLAIHGLAMDALSLFLRMEHENVLPDAITFLGILTACNHGGLIDHGRRYFELMRSRY 300

Query: 339 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVA 398
           SIQPQLEHYGVMVDLYSRAGFLEEAYSLIV MP+EPDVVTWRTLLSGC+IY+N KLAEVA
Sbjct: 301 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCKIYKNHKLAEVA 360

Query: 399 IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKS 458
           IANMSH KSGDYVLLSNIYCSLNRWE AETVRKMMKIN VRK  GKSWIELGGT Q FKS
Sbjct: 361 IANMSHCKSGDYVLLSNIYCSLNRWEEAETVRKMMKINRVRKKRGKSWIELGGTTQYFKS 420

Query: 459 GDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAI 518
           GDR HPESDAI K+LCSLMKRTRSEGY PVTELVFMDISEEEKEENLSFHSEK+ALAYAI
Sbjct: 421 GDRLHPESDAIDKVLCSLMKRTRSEGYMPVTELVFMDISEEEKEENLSFHSEKMALAYAI 480

Query: 519 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCR IVVRDRIRFHQFEGGMCSCGDRW
Sbjct: 481 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 538

[Close]

BLAST of Clc06G19780 vs. ExPASy TrEMBL
Match: A0A0A0LXZ9 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G666990 PE=3 SV=1)

HSP 1 Score: 964.5 bits (2492), Expect = 1.9e-277
Identity = 473/538 (87.92%), Postives = 497/538 (92.38%), Query Frame = 0


Query: 39  LLKQRYLDRKRITSALLATSPSASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHAR 98
           +LKQRYLD +RIT ALLATS S  PA   NSKDYQ+LYRVLEACRLF  NSKT IETHAR
Sbjct: 1   MLKQRYLDCRRITFALLATSASGLPAAPSNSKDYQSLYRVLEACRLFHMNSKTVIETHAR 60

Query: 99  IIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECK 158
           IIKFGYGNYPTLI SLVSTYQR GCLNRVHQLLD+LCSK LDLVAMNLLI NFMKIGECK
Sbjct: 61  IIKFGYGNYPTLIASLVSTYQRVGCLNRVHQLLDILCSKQLDLVAMNLLIGNFMKIGECK 120

Query: 159 FAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDSNIQPDGFTFASLLNACA 218
           FAKKVFYKMP RDVVTWNSIIGG VKNARYDEAFRFFRQML SNIQPDGFTFAS+LNACA
Sbjct: 121 FAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASILNACA 180

Query: 219 QLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNA 278
           QLGAPS T WVHA +T+KKIELNS+L+CALIDAYSKCGSIQIA+E+FS +PHSD SVWN 
Sbjct: 181 QLGAPSNTHWVHAQMTQKKIELNSLLTCALIDAYSKCGSIQIAKEIFSNIPHSDTSVWNV 240

Query: 279 MIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRY 338
           MIKGLAIHGLAMDALSLFL ME E+V+PDA+TFLG+LTACNHG LID GRRYF+ MKS Y
Sbjct: 241 MIKGLAIHGLAMDALSLFLRMEHESVLPDAITFLGVLTACNHGCLIDHGRRYFELMKSHY 300

Query: 339 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVA 398
           SIQPQLEHYGVMVDLYSRAGFLEEAYSLIV MP+EPDVVTWRTLLSGCRIY+N KLAEVA
Sbjct: 301 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCRIYKNHKLAEVA 360

Query: 399 IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKS 458
           IANMS RKSGDYVLLSNIYCSLNRW+ AETVRKMMKIN VRK  GKSWIELGGTIQ+FKS
Sbjct: 361 IANMSQRKSGDYVLLSNIYCSLNRWKEAETVRKMMKINRVRKKRGKSWIELGGTIQHFKS 420

Query: 459 GDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAI 518
           GDR HPESDAI K+LCSLMKRTR+EGY PVTELVFMDISEEEKEENLSFHSEK+ALAYAI
Sbjct: 421 GDRLHPESDAIEKVLCSLMKRTRTEGYMPVTELVFMDISEEEKEENLSFHSEKMALAYAI 480

Query: 519 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCR IVVRDRIRFHQFEGGMCSCGDRW
Sbjct: 481 LKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 538

[Close]

BLAST of Clc06G19780 vs. ExPASy TrEMBL
Match: A0A6J1E5D9 (pentatricopeptide repeat-containing protein At5g50990 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430093 PE=3 SV=1)

HSP 1 Score: 928.3 bits (2398), Expect = 1.5e-266
Identity = 468/629 (74.40%), Postives = 514/629 (81.72%), Query Frame = 0


Query: 18  FRLLHRRREGYRKNTRTEVKMLLKQRYLDRKRITSALLATSPSASPAP------------ 77
           FRLL+R R       R ++KML KQRY +R+RITSALLATS  A P P            
Sbjct: 8   FRLLYRCR-------RRKLKMLQKQRYSERQRITSALLATSAYALPGPLRIPRVPLSSLL 67

Query: 78  -------------------------------------------SWNSKD----------- 137
                                                       WNS +           
Sbjct: 68  PFTSSPIHVHYTSCASLPNPLPLLNFMSIRCICFLPPSPPSSIPWNSNELEDANSTSKFT 127

Query: 138 ----YQTLYRVLEACRLFPFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRV 197
               YQTLYRVLEACRL P NSKTA ETHAR+IKFGYGNYPTL+TSLVS YQRA CLNRV
Sbjct: 128 VEAGYQTLYRVLEACRLSPSNSKTASETHARMIKFGYGNYPTLVTSLVSAYQRADCLNRV 187

Query: 198 HQLLDLLCSKHLDLVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNAR 257
           HQLL+LLCSKHLDLVAMNL I+NFMKIGECK AK+VF KMP+RDVVTWNSIIGG VKNAR
Sbjct: 188 HQLLNLLCSKHLDLVAMNLFIDNFMKIGECKLAKRVFDKMPYRDVVTWNSIIGGCVKNAR 247

Query: 258 YDEAFRFFRQMLDSNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCA 317
           Y+EAF+FFRQML+SNIQPDGFTFAS+LNACAQLGAPS TQWVHAL+T+KKIELNSILSCA
Sbjct: 248 YEEAFKFFRQMLNSNIQPDGFTFASVLNACAQLGAPSNTQWVHALMTQKKIELNSILSCA 307

Query: 318 LIDAYSKCGSIQIAEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTMERENVVPD 377
           LIDAYSKCGSIQIA+E+FS VP S++SVWNAMIKGLAIHGL+MDALS+F  MERENV+PD
Sbjct: 308 LIDAYSKCGSIQIAKEIFSSVPRSNISVWNAMIKGLAIHGLSMDALSVFWMMERENVLPD 367

Query: 378 AVTFLGILTACNHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLI 437
           AVTFLGILTACNHGGLI++GRR+FDWMK+RYSIQPQLEHYGVMVDLYSRAGFLEEAYS+I
Sbjct: 368 AVTFLGILTACNHGGLIEQGRRFFDWMKNRYSIQPQLEHYGVMVDLYSRAGFLEEAYSII 427

Query: 438 VAMPLEPDVVTWRTLLSGCRIYRNQKLAEVAIANMSHRKSGDYVLLSNIYCSLNRWEHAE 497
           VAMP+E DVVTWR LLSGCRIYRNQ+LAEVAIANMSHR SGDYVLLSNIYCSLNRWEHAE
Sbjct: 428 VAMPIEADVVTWRALLSGCRIYRNQELAEVAIANMSHRGSGDYVLLSNIYCSLNRWEHAE 487

Query: 498 TVRKMMKINGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTP 557
            VR+ MK NGVRK+CGKSWIELGG+IQ+FKSGDRSHPESDA+YK++  LMKR+RSEGY P
Sbjct: 488 RVRERMKSNGVRKSCGKSWIELGGSIQSFKSGDRSHPESDAVYKVVWRLMKRSRSEGYMP 547

Query: 558 VTELVFMDISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVS 577
           VT+LV MDISEEEKEENLS+HSEK+ALAYAILKT PGAKISISKNLR+CDDCH WIKLVS
Sbjct: 548 VTDLVLMDISEEEKEENLSYHSEKLALAYAILKTGPGAKISISKNLRMCDDCHRWIKLVS 607

[Close]

BLAST of Clc06G19780 vs. TAIR 10
Match: AT5G50990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 575.9 bits (1483), Expect = 3.7e-164
Identity = 278/518 (53.67%), Postives = 373/518 (72.01%), Query Frame = 0


Query: 60  SASPAPSWNSKDYQTLYRVLEACRLFPFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQ 119
           S S + + N  D+  L +VLE+C+  P NSK  ++ HA+I K GYG YP+L+ S V+ Y+
Sbjct: 18  SLSSSSASNLTDHGMLKQVLESCKA-PSNSKCVLQAHAQIFKLGYGTYPSLLVSTVAAYR 77

Query: 120 RAGCLNRVHQLLDLLCSKHLDLVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSII 179
           R        +LL    S    +  +NL+IE+ MKIGE   AKKV      ++V+TWN +I
Sbjct: 78  RCNRSYLARRLLLWFLSLSPGVCNINLIIESLMKIGESGLAKKVLRNASDQNVITWNLMI 137

Query: 180 GGYVKNARYDEAFRFFRQMLD-SNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKI 239
           GGYV+N +Y+EA +  + ML  ++I+P+ F+FAS L ACA+LG     +WVH+L+    I
Sbjct: 138 GGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGI 197

Query: 240 ELNSILSCALIDAYSKCGSIQIAEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLT 299
           ELN+ILS AL+D Y+KCG I  + E+F  V  +DVS+WNAMI G A HGLA +A+ +F  
Sbjct: 198 ELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSE 257

Query: 300 MERENVVPDAVTFLGILTACNHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAG 359
           ME E+V PD++TFLG+LT C+H GL++EG+ YF  M  R+SIQP+LEHYG MVDL  RAG
Sbjct: 258 MEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAG 317

Query: 360 FLEEAYSLIVAMPLEPDVVTWRTLLSGCRIYRNQKLAEVAIANMSHRKSGDYVLLSNIYC 419
            ++EAY LI +MP+EPDVV WR+LLS  R Y+N +L E+AI N+S  KSGDYVLLSNIY 
Sbjct: 318 RVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIAIQNLSKAKSGDYVLLSNIYS 377

Query: 420 SLNRWEHAETVRKMMKINGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMK 479
           S  +WE A+ VR++M   G+RK  GKSW+E GG I  FK+GD SH E+ AIYK+L  L++
Sbjct: 378 STKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQ 437

Query: 480 RTRSEGYTPVTELVFMDISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDD 539
           +T+S+G+   T+LV MD+SEEEKEENL++HSEK+ALAY ILK+SPG +I I KN+R+C D
Sbjct: 438 KTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSD 497

Query: 540 CHTWIKLVSRVLCRTIVVRDRIRFHQFEGGMCSCGDRW 577
           CH WIK VS++L R I++RDRIRFH+FE G+CSC D W
Sbjct: 498 CHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534

[Close]

BLAST of Clc06G19780 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 410.2 bits (1053), Expect = 2.7e-114
Identity = 209/501 (41.72%), Postives = 312/501 (62.28%), Query Frame = 0


Query: 86  PFNSKTAIETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLLDLLCSKHLDLVAMN 145
           P +      THA+I+ FG    P + TSL++ Y   G L    ++ D   SK  DL A N
Sbjct: 75  PLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSK--DLPAWN 134

Query: 146 LLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQML-----D 205
            ++  + K G    A+K+F +MP R+V++W+ +I GYV   +Y EA   FR+M      +
Sbjct: 135 SVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNE 194

Query: 206 SNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQI 265
           + ++P+ FT +++L+AC +LGA  + +WVHA I +  +E++ +L  ALID Y+KCGS++ 
Sbjct: 195 AFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLER 254

Query: 266 AEEMFSCV-PHSDVSVWNAMIKGLAIHGLAMDALSLFLTM-ERENVVPDAVTFLGILTAC 325
           A+ +F+ +    DV  ++AMI  LA++GL  +   LF  M   +N+ P++VTF+GIL AC
Sbjct: 255 AKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGAC 314

Query: 326 NHGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVT 385
            H GLI+EG+ YF  M   + I P ++HYG MVDLY R+G ++EA S I +MP+EPDV+ 
Sbjct: 315 VHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLI 374

Query: 386 WRTLLSGCRIYRNQKLAEVA---IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKI 445
           W +LLSG R+  + K  E A   +  +    SG YVLLSN+Y    RW   + +R  M++
Sbjct: 375 WGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEV 434

Query: 446 NGVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMD 505
            G+ K  G S++E+ G +  F  GD S  ES+ IY +L  +M+R R  GY   T+ V +D
Sbjct: 435 KGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLD 494

Query: 506 ISEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIV 565
           ++E++KE  LS+HSEK+A+A+ ++KT PG  + I KNLRIC DCH  +K++S++  R IV
Sbjct: 495 LNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIV 554

Query: 566 VRDRIRFHQFEGGMCSCGDRW 577
           VRD  RFH F  G CSC D W
Sbjct: 555 VRDCNRFHHFRDGSCSCRDFW 573

[Close]

BLAST of Clc06G19780 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 399.8 bits (1026), Expect = 3.7e-111
Identity = 202/498 (40.56%), Postives = 298/498 (59.84%), Query Frame = 0


Query: 94  ETHARIIKFGYGNYPTLITSLVSTYQRAGCLNRVHQLL-------DLLC-----SKHLDL 153
           + H   +K+G+G    ++++LV  Y   G +     L        D++       +  ++
Sbjct: 149 QIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEI 208

Query: 154 VAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLDS 213
           V  N++I+ +M++G+CK A+ +F KM  R VV+WN++I GY  N  + +A   FR+M   
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG 268

Query: 214 NIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQIA 273
           +I+P+  T  S+L A ++LG+    +W+H       I ++ +L  ALID YSKCG I+ A
Sbjct: 269 DIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328

Query: 274 EEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTMERENVVPDAVTFLGILTACNHG 333
             +F  +P  +V  W+AMI G AIHG A DA+  F  M +  V P  V ++ +LTAC+HG
Sbjct: 329 IHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388

Query: 334 GLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTWRT 393
           GL++EGRRYF  M S   ++P++EHYG MVDL  R+G L+EA   I+ MP++PD V W+ 
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448

Query: 394 LLSGCRIYRNQKLAE-VA--IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKINGV 453
           LL  CR+  N ++ + VA  + +M    SG YV LSN+Y S   W     +R  MK   +
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508

Query: 454 RKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDISE 513
           RK+ G S I++ G +  F   D SHP++  I  +L  +  + R  GY P+T  V +++ E
Sbjct: 509 RKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEE 568

Query: 514 EEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVVRD 573
           E+KE  L +HSEKIA A+ ++ TSPG  I I KNLRIC+DCH+ IKL+S+V  R I VRD
Sbjct: 569 EDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRD 628

Query: 574 RIRFHQFEGGMCSCGDRW 577
           R RFH F+ G CSC D W
Sbjct: 629 RKRFHHFQDGSCSCMDYW 646

[Close]

BLAST of Clc06G19780 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 399.1 bits (1024), Expect = 6.2e-111
Identity = 194/440 (44.09%), Postives = 281/440 (63.86%), Query Frame = 0


Query: 141 LVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLD 200
           +   N L+  +   G+   A KVF KMP +D+V WNS+I G+ +N + +EA   + +M  
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215

Query: 201 SNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQI 260
             I+PDGFT  SLL+ACA++GA +  + VH  + +  +  N   S  L+D Y++CG ++ 
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275

Query: 261 AEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTME-RENVVPDAVTFLGILTACN 320
           A+ +F  +   +   W ++I GLA++G   +A+ LF  ME  E ++P  +TF+GIL AC+
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335

Query: 321 HGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTW 380
           H G++ EG  YF  M+  Y I+P++EH+G MVDL +RAG +++AY  I +MP++P+VV W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395

Query: 381 RTLLSGCRIYRNQKLAEVA---IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKIN 440
           RTLL  C ++ +  LAE A   I  +    SGDYVLLSN+Y S  RW   + +RK M  +
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455

Query: 441 GVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDI 500
           GV+K  G S +E+G  +  F  GD+SHP+SDAIY  L  +  R RSEGY P    V++D+
Sbjct: 456 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 515

Query: 501 SEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVV 560
            EEEKE  + +HSEKIA+A+ ++ T   + I++ KNLR+C DCH  IKLVS+V  R IVV
Sbjct: 516 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 575

Query: 561 RDRIRFHQFEGGMCSCGDRW 577
           RDR RFH F+ G CSC D W
Sbjct: 576 RDRSRFHHFKNGSCSCQDYW 595

[Close]

BLAST of Clc06G19780 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 399.1 bits (1024), Expect = 6.2e-111
Identity = 194/440 (44.09%), Postives = 281/440 (63.86%), Query Frame = 0


Query: 141 LVAMNLLIENFMKIGECKFAKKVFYKMPHRDVVTWNSIIGGYVKNARYDEAFRFFRQMLD 200
           +   N L+  +   G+   A KVF KMP +D+V WNS+I G+ +N + +EA   + +M  
Sbjct: 23  IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 82

Query: 201 SNIQPDGFTFASLLNACAQLGAPSKTQWVHALITRKKIELNSILSCALIDAYSKCGSIQI 260
             I+PDGFT  SLL+ACA++GA +  + VH  + +  +  N   S  L+D Y++CG ++ 
Sbjct: 83  KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 142

Query: 261 AEEMFSCVPHSDVSVWNAMIKGLAIHGLAMDALSLFLTME-RENVVPDAVTFLGILTACN 320
           A+ +F  +   +   W ++I GLA++G   +A+ LF  ME  E ++P  +TF+GIL AC+
Sbjct: 143 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 202

Query: 321 HGGLIDEGRRYFDWMKSRYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVAMPLEPDVVTW 380
           H G++ EG  YF  M+  Y I+P++EH+G MVDL +RAG +++AY  I +MP++P+VV W
Sbjct: 203 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 262

Query: 381 RTLLSGCRIYRNQKLAEVA---IANMSHRKSGDYVLLSNIYCSLNRWEHAETVRKMMKIN 440
           RTLL  C ++ +  LAE A   I  +    SGDYVLLSN+Y S  RW   + +RK M  +
Sbjct: 263 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 322

Query: 441 GVRKNCGKSWIELGGTIQNFKSGDRSHPESDAIYKLLCSLMKRTRSEGYTPVTELVFMDI 500
           GV+K  G S +E+G  +  F  GD+SHP+SDAIY  L  +  R RSEGY P    V++D+
Sbjct: 323 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 382

Query: 501 SEEEKEENLSFHSEKIALAYAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRTIVV 560
            EEEKE  + +HSEKIA+A+ ++ T   + I++ KNLR+C DCH  IKLVS+V  R IVV
Sbjct: 383 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 442

Query: 561 RDRIRFHQFEGGMCSCGDRW 577
           RDR RFH F+ G CSC D W
Sbjct: 443 RDRSRFHHFKNGSCSCQDYW 462

The following BLAST results are available for this feature:

BLAST of Clc06G19780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879432.1	1.8e-293	90.91	pentatricopeptide repeat-containing protein At5g50990 isoform X1 [Benincasa hisp...	[more]
TYJ96962.1	2.5e-279	88.70	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008443769.1	4.7e-278	88.66	PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Cucumis melo] ...	[more]
XP_011660258.1	4.0e-277	87.92	pentatricopeptide repeat-containing protein At5g50990 isoform X1 [Cucumis sativu...	[more]
XP_023516965.1	4.9e-267	74.56	pentatricopeptide repeat-containing protein At5g50990 isoform X2 [Cucurbita pepo...	[more]

BLAST of Clc06G19780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FI49	5.2e-163	53.67	Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana OX...	[more]
Q683I9	3.8e-113	41.72	Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX...	[more]
Q9FI80	5.1e-110	40.56	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
A8MQA3	8.8e-110	44.09	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9FJY7	1.5e-109	39.29	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]

BLAST of Clc06G19780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAU8	1.2e-279	88.70	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DV22	2.3e-278	88.66	pentatricopeptide repeat-containing protein At5g50990 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7T674	2.3e-278	88.66	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0LXZ9	1.9e-277	87.92	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G6669...	[more]
A0A6J1E5D9	1.5e-266	74.40	pentatricopeptide repeat-containing protein At5g50990 isoform X2 OS=Cucurbita mo...	[more]

BLAST of Clc06G19780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50990.1	3.7e-164	53.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G62890.1	2.7e-114	41.72	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G48910.1	3.7e-111	40.56	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21065.1	6.2e-111	44.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.2	6.2e-111	44.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 443..566 e-value: 1.1E-35 score: 122.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 170..218 e-value: 1.6E-15 score: 57.0 coord: 272..318 e-value: 1.5E-8 score: 34.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 275..308 e-value: 2.2E-5 score: 22.4 coord: 173..206 e-value: 1.3E-9 score: 35.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 412..438 e-value: 0.39 score: 11.1 coord: 346..370 e-value: 0.012 score: 15.8 coord: 247..266 e-value: 0.25 score: 11.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 171..205 score: 13.76745
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 272..306 score: 10.785976
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 87..270 e-value: 2.6E-29 score: 104.6 coord: 271..466 e-value: 2.0E-32 score: 114.8
None	No IPR available	PANTHER	PTHR24015:SF297	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 54..522
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 54..522

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G19780.1	Clc06G19780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding