Clc06G17380 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGAAGAGACAATCCCTCAACTCGCTGAAAACAATCTCGAAGTAACCAACTCAGGCACCGAAGATATGGAATTGGAAAATACAGAGCCGAAAGGATCAAGTGATGCTTCTGAACCAAATGAGGCCGCTCCAGAAACTAATGGCGATGCAAATTCCAAGCGAGAGAGGGAGGAGGCAAGCGCCGATGAAGGTGTTGGAGGCGGGAAAAAGCAGAAGATGGAGAAGTCAGTTGAGGAGGAAAGGCTTGAGAAGGCGGGAGGAGACGATAAGGGGGAGGAGGAGCCTGTTCCTGTGAGTTTAGGCCCCAAGAGCTTTCGATCTTCGGTGGAATTGTTCGATTACTTCTACAAGTTCCTCCATCACTGGCCAGTCAACTTGAACGTGAACCAGGTATAATATTATGAACTTCTTTTTAATGTGGTATCGTCCTCTGTTTTGTTAATTGAAAGCGTGAGAATGGTATTCAGAAAATTTTATTTTGGTTAGAATTGAGAGTTGGAACGTGATTGAAAATTCTCTTTTTCTACTAAATGCTGCTGTTTTTGCTTATATTCATCATTGTTTTAGTGTGTGAAAGTTGAACAGTTTTAGCAAAAGGGTTTATTGTTCAAACTTATGTTTTTTTCCCCTTTTTCCGCATTCTCTTCCTAGAACGTTTTTGCATCGATCAATTTGATATTAAGCCTTTGACATTGTTTAGCTTTTATGTGTCATGAATTGTTGTCAATGGTCTGTTAAGTAACTTGGGTATGTAATCTGTTGTGGACTCGAATCACTTCTTGGGGAAAAGCTTGTAACTGCGTACATGTTAGAATCAGAGAGGTGGCGTTCTTCAATATTCTTATGGAGACTAATGATGGTTGCTTATTAACTTAAGTTCTTTTTTTATATTATTTGAATACAATGCTTGCTTATGGTTCCCCGTAGTTGACTCTAAGTTAATTGGAAACCTAAAGATCCTCTTGGTTCTTCCTGTGAGTTCGATTAATTAGTGTTGTTGGTTTAATTTTGTACAATTTTCTGTGTATGTATATATAGACACAAACACATATATTTGGTTGTGTGGTGATCCGTTTTGTGGATTCTTTTCGTCACTTCTGGTTTTCATGGCTGGATGGTTTTTCCTAAACTTAACATGATTTTTGAGTCATTTTTCAATATTTCTTCAAATGTCTGTTGACTGTTGGTAGGTGTCTGTTTGCTCAAACCCACTTACTTCTTTAGATGAGACTGTTTGACATTATTATTTAATCATATAAAATGGAATCTATGTACTACTAGACAACTCATAGCCTGGATGAATAAATTTTATTTGTTTCTGCGAACAGATACTCTTTTGACCTTATTTGCTCATTGAAGAATTTCTTTCAGCAGCTTATTTTGCTTTGTTATGTTGCTATTCTTCATGATTCCCTTATTCTTGATTGATTTCAGTGGAAGCTATGATTAGTGTTTGGACATCCATATATTCATGGCTGGTAACAGGTCTTGATCATATGGGGATTATCTTTTTCAAATAATTCTTAAATCAAAACACGAAAGACAGTCAAGTGTTATTCTTTGTATTCCGCAGCAGTTATTAGTACTTCTACTGTTTAAAAGTGTTTAGAAGTGTAGTCCGTTAGGCTTTAGCCCACTTTACCATAACTTAAATGGTTATAAAATTAGTAATGTAATGTCCTTTGTAGGTTTGAATTCTTGTTCTAGAAAAAGAAGAGTAAAATAATCCCCCAAAGTCTTTTCCTTGTTGGAAACATCTATAATTGATAATGTACAAGATGAATAAGGATAATGAACTGATGCAGGGAAAAAATATATTCATAATGAGGAGGCATTGATTCTCTTAATACAATATTTGATATTTGTTTCTATGGCAGTACGAGCAGATGGTGCTGGTGGATTTGCTTAAGAAGGGGCATGTAGAACCAGAGAAAAAGATCGGCTGTGGTATTCAGGCCTTCCAAGTTCGATACCATCCTATGTGGAAAAGCAAGTGTTTCTTCCTCATCAGGGCGGACGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCCCTGCCTGAAAACTTCAAAGGAAAATCTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGCGGGGGTGGTGGACGTGGAAGAGGAGGGGGTAGGTGGAGAAACTGA ATGGCAGAAGAGACAATCCCTCAACTCGCTGAAAACAATCTCGAAGTAACCAACTCAGGCACCGAAGATATGGAATTGGAAAATACAGAGCCGAAAGGATCAAGTGATGCTTCTGAACCAAATGAGGCCGCTCCAGAAACTAATGGCGATGCAAATTCCAAGCGAGAGAGGGAGGAGGCAAGCGCCGATGAAGGTGTTGGAGGCGGGAAAAAGCAGAAGATGGAGAAGTCAGTTGAGGAGGAAAGGCTTGAGAAGGCGGGAGGAGACGATAAGGGGGAGGAGGAGCCTGTTCCTGTGAGTTTAGGCCCCAAGAGCTTTCGATCTTCGGTGGAATTGTTCGATTACTTCTACAAGTTCCTCCATCACTGGCCAGTCAACTTGAACGTGAACCAGTACGAGCAGATGGTGCTGGTGGATTTGCTTAAGAAGGGGCATGTAGAACCAGAGAAAAAGATCGGCTGTGGTATTCAGGCCTTCCAAGTTCGATACCATCCTATGTGGAAAAGCAAGTGTTTCTTCCTCATCAGGGCGGACGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCCCTGCCTGAAAACTTCAAAGGAAAATCTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGCGGGGGTGGTGGACGTGGAAGAGGAGGGGGTAGGTGGAGAAACTGA ATGGCAGAAGAGACAATCCCTCAACTCGCTGAAAACAATCTCGAAGTAACCAACTCAGGCACCGAAGATATGGAATTGGAAAATACAGAGCCGAAAGGATCAAGTGATGCTTCTGAACCAAATGAGGCCGCTCCAGAAACTAATGGCGATGCAAATTCCAAGCGAGAGAGGGAGGAGGCAAGCGCCGATGAAGGTGTTGGAGGCGGGAAAAAGCAGAAGATGGAGAAGTCAGTTGAGGAGGAAAGGCTTGAGAAGGCGGGAGGAGACGATAAGGGGGAGGAGGAGCCTGTTCCTGTGAGTTTAGGCCCCAAGAGCTTTCGATCTTCGGTGGAATTGTTCGATTACTTCTACAAGTTCCTCCATCACTGGCCAGTCAACTTGAACGTGAACCAGTACGAGCAGATGGTGCTGGTGGATTTGCTTAAGAAGGGGCATGTAGAACCAGAGAAAAAGATCGGCTGTGGTATTCAGGCCTTCCAAGTTCGATACCATCCTATGTGGAAAAGCAAGTGTTTCTTCCTCATCAGGGCGGACGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCCCTGCCTGAAAACTTCAAAGGAAAATCTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGCGGGGGTGGTGGACGTGGAAGAGGAGGGGGTAGGTGGAGAAACTGA MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEASADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFLHHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADESADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWRN Homology
BLAST of Clc06G17380 vs. NCBI nr
Match: XP_008453205.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo] >KAA0057942.1 protein DCL [Cucumis melo var. makuwa]) HSP 1 Score: 380.9 bits (977), Expect = 7.7e-102 Identity = 207/236 (87.71%), Postives = 217/236 (91.95%), Query Frame = 0
BLAST of Clc06G17380 vs. NCBI nr
Match: XP_038880608.1 (protein EMBRYO DEFECTIVE 514 [Benincasa hispida]) HSP 1 Score: 378.6 bits (971), Expect = 3.8e-101 Identity = 203/239 (84.94%), Postives = 213/239 (89.12%), Query Frame = 0
BLAST of Clc06G17380 vs. NCBI nr
Match: XP_011660085.1 (protein EMBRYO DEFECTIVE 514 [Cucumis sativus] >KGN63669.1 hypothetical protein Csa_014307 [Cucumis sativus]) HSP 1 Score: 377.9 bits (969), Expect = 6.5e-101 Identity = 206/236 (87.29%), Postives = 214/236 (90.68%), Query Frame = 0
BLAST of Clc06G17380 vs. NCBI nr
Match: XP_022135230.1 (protein EMBRYO DEFECTIVE 514 [Momordica charantia]) HSP 1 Score: 340.5 bits (872), Expect = 1.2e-89 Identity = 187/239 (78.24%), Postives = 205/239 (85.77%), Query Frame = 0
BLAST of Clc06G17380 vs. NCBI nr
Match: XP_022933555.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata]) HSP 1 Score: 340.1 bits (871), Expect = 1.5e-89 Identity = 184/235 (78.30%), Postives = 195/235 (82.98%), Query Frame = 0
BLAST of Clc06G17380 vs. ExPASy Swiss-Prot
Match: Q8L557 (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 1.3e-46 Identity = 113/216 (52.31%), Postives = 133/216 (61.57%), Query Frame = 0
BLAST of Clc06G17380 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 5.3e-05 Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = 0
BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A5A7UQ03 (Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002450 PE=4 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 3.7e-102 Identity = 207/236 (87.71%), Postives = 217/236 (91.95%), Query Frame = 0
BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A1S3BWT9 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 3.7e-102 Identity = 207/236 (87.71%), Postives = 217/236 (91.95%), Query Frame = 0
BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A0A0LRN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 3.2e-101 Identity = 206/236 (87.29%), Postives = 214/236 (90.68%), Query Frame = 0
BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A6J1C0K4 (protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 5.6e-90 Identity = 187/239 (78.24%), Postives = 205/239 (85.77%), Query Frame = 0
BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A6J1F569 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 PE=4 SV=1) HSP 1 Score: 340.1 bits (871), Expect = 7.3e-90 Identity = 184/235 (78.30%), Postives = 195/235 (82.98%), Query Frame = 0
BLAST of Clc06G17380 vs. TAIR 10
Match: AT5G62440.1 (Protein of unknown function (DUF3223) ) HSP 1 Score: 188.0 bits (476), Expect = 8.9e-48 Identity = 113/216 (52.31%), Postives = 133/216 (61.57%), Query Frame = 0
BLAST of Clc06G17380 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) ) HSP 1 Score: 49.7 bits (117), Expect = 3.8e-06 Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = 0
BLAST of Clc06G17380 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) ) HSP 1 Score: 49.3 bits (116), Expect = 4.9e-06 Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = 0
BLAST of Clc06G17380 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A ) HSP 1 Score: 45.4 bits (106), Expect = 7.1e-05 Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 0
BLAST of Clc06G17380 vs. TAIR 10
Match: AT1G63020.2 (nuclear RNA polymerase D1A ) HSP 1 Score: 45.4 bits (106), Expect = 7.1e-05 Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|