Clc06G17380 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G17380
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein EMBRYO DEFECTIVE 514
Location	ClcChr06: 27975520 .. 27977714 (-)
RNA-Seq Expression	Clc06G17380
Synteny	Clc06G17380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGAGACAATCCCTCAACTCGCTGAAAACAATCTCGAAGTAACCAACTCAGGCACCGAAGATATGGAATTGGAAAATACAGAGCCGAAAGGATCAAGTGATGCTTCTGAACCAAATGAGGCCGCTCCAGAAACTAATGGCGATGCAAATTCCAAGCGAGAGAGGGAGGAGGCAAGCGCCGATGAAGGTGTTGGAGGCGGGAAAAAGCAGAAGATGGAGAAGTCAGTTGAGGAGGAAAGGCTTGAGAAGGCGGGAGGAGACGATAAGGGGGAGGAGGAGCCTGTTCCTGTGAGTTTAGGCCCCAAGAGCTTTCGATCTTCGGTGGAATTGTTCGATTACTTCTACAAGTTCCTCCATCACTGGCCAGTCAACTTGAACGTGAACCAGGTATAATATTATGAACTTCTTTTTAATGTGGTATCGTCCTCTGTTTTGTTAATTGAAAGCGTGAGAATGGTATTCAGAAAATTTTATTTTGGTTAGAATTGAGAGTTGGAACGTGATTGAAAATTCTCTTTTTCTACTAAATGCTGCTGTTTTTGCTTATATTCATCATTGTTTTAGTGTGTGAAAGTTGAACAGTTTTAGCAAAAGGGTTTATTGTTCAAACTTATGTTTTTTTCCCCTTTTTCCGCATTCTCTTCCTAGAACGTTTTTGCATCGATCAATTTGATATTAAGCCTTTGACATTGTTTAGCTTTTATGTGTCATGAATTGTTGTCAATGGTCTGTTAAGTAACTTGGGTATGTAATCTGTTGTGGACTCGAATCACTTCTTGGGGAAAAGCTTGTAACTGCGTACATGTTAGAATCAGAGAGGTGGCGTTCTTCAATATTCTTATGGAGACTAATGATGGTTGCTTATTAACTTAAGTTCTTTTTTTATATTATTTGAATACAATGCTTGCTTATGGTTCCCCGTAGTTGACTCTAAGTTAATTGGAAACCTAAAGATCCTCTTGGTTCTTCCTGTGAGTTCGATTAATTAGTGTTGTTGGTTTAATTTTGTACAATTTTCTGTGTATGTATATATAGACACAAACACATATATTTGGTTGTGTGGTGATCCGTTTTGTGGATTCTTTTCGTCACTTCTGGTTTTCATGGCTGGATGGTTTTTCCTAAACTTAACATGATTTTTGAGTCATTTTTCAATATTTCTTCAAATGTCTGTTGACTGTTGGTAGGTGTCTGTTTGCTCAAACCCACTTACTTCTTTAGATGAGACTGTTTGACATTATTATTTAATCATATAAAATGGAATCTATGTACTACTAGACAACTCATAGCCTGGATGAATAAATTTTATTTGTTTCTGCGAACAGATACTCTTTTGACCTTATTTGCTCATTGAAGAATTTCTTTCAGCAGCTTATTTTGCTTTGTTATGTTGCTATTCTTCATGATTCCCTTATTCTTGATTGATTTCAGTGGAAGCTATGATTAGTGTTTGGACATCCATATATTCATGGCTGGTAACAGGTCTTGATCATATGGGGATTATCTTTTTCAAATAATTCTTAAATCAAAACACGAAAGACAGTCAAGTGTTATTCTTTGTATTCCGCAGCAGTTATTAGTACTTCTACTGTTTAAAAGTGTTTAGAAGTGTAGTCCGTTAGGCTTTAGCCCACTTTACCATAACTTAAATGGTTATAAAATTAGTAATGTAATGTCCTTTGTAGGTTTGAATTCTTGTTCTAGAAAAAGAAGAGTAAAATAATCCCCCAAAGTCTTTTCCTTGTTGGAAACATCTATAATTGATAATGTACAAGATGAATAAGGATAATGAACTGATGCAGGGAAAAAATATATTCATAATGAGGAGGCATTGATTCTCTTAATACAATATTTGATATTTGTTTCTATGGCAGTACGAGCAGATGGTGCTGGTGGATTTGCTTAAGAAGGGGCATGTAGAACCAGAGAAAAAGATCGGCTGTGGTATTCAGGCCTTCCAAGTTCGATACCATCCTATGTGGAAAAGCAAGTGTTTCTTCCTCATCAGGGCGGACGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCCCTGCCTGAAAACTTCAAAGGAAAATCTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGCGGGGGTGGTGGACGTGGAAGAGGAGGGGGTAGGTGGAGAAACTGA

mRNA sequence

ATGGCAGAAGAGACAATCCCTCAACTCGCTGAAAACAATCTCGAAGTAACCAACTCAGGCACCGAAGATATGGAATTGGAAAATACAGAGCCGAAAGGATCAAGTGATGCTTCTGAACCAAATGAGGCCGCTCCAGAAACTAATGGCGATGCAAATTCCAAGCGAGAGAGGGAGGAGGCAAGCGCCGATGAAGGTGTTGGAGGCGGGAAAAAGCAGAAGATGGAGAAGTCAGTTGAGGAGGAAAGGCTTGAGAAGGCGGGAGGAGACGATAAGGGGGAGGAGGAGCCTGTTCCTGTGAGTTTAGGCCCCAAGAGCTTTCGATCTTCGGTGGAATTGTTCGATTACTTCTACAAGTTCCTCCATCACTGGCCAGTCAACTTGAACGTGAACCAGTACGAGCAGATGGTGCTGGTGGATTTGCTTAAGAAGGGGCATGTAGAACCAGAGAAAAAGATCGGCTGTGGTATTCAGGCCTTCCAAGTTCGATACCATCCTATGTGGAAAAGCAAGTGTTTCTTCCTCATCAGGGCGGACGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCCCTGCCTGAAAACTTCAAAGGAAAATCTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGCGGGGGTGGTGGACGTGGAAGAGGAGGGGGTAGGTGGAGAAACTGA

Coding sequence (CDS)

ATGGCAGAAGAGACAATCCCTCAACTCGCTGAAAACAATCTCGAAGTAACCAACTCAGGCACCGAAGATATGGAATTGGAAAATACAGAGCCGAAAGGATCAAGTGATGCTTCTGAACCAAATGAGGCCGCTCCAGAAACTAATGGCGATGCAAATTCCAAGCGAGAGAGGGAGGAGGCAAGCGCCGATGAAGGTGTTGGAGGCGGGAAAAAGCAGAAGATGGAGAAGTCAGTTGAGGAGGAAAGGCTTGAGAAGGCGGGAGGAGACGATAAGGGGGAGGAGGAGCCTGTTCCTGTGAGTTTAGGCCCCAAGAGCTTTCGATCTTCGGTGGAATTGTTCGATTACTTCTACAAGTTCCTCCATCACTGGCCAGTCAACTTGAACGTGAACCAGTACGAGCAGATGGTGCTGGTGGATTTGCTTAAGAAGGGGCATGTAGAACCAGAGAAAAAGATCGGCTGTGGTATTCAGGCCTTCCAAGTTCGATACCATCCTATGTGGAAAAGCAAGTGTTTCTTCCTCATCAGGGCGGACGAGTCTGCTGATGACTTCAGCTTCAGGAAGTGTGTGGATCATATCCTTCCCCTGCCTGAAAACTTCAAAGGAAAATCTGATGCAAACAGAGCATTAGGCGGTGGTAAGCACCGCGGTGGAGGACGAGGCGGGGGTGGTGGACGTGGAAGAGGAGGGGGTAGGTGGAGAAACTGA

Protein sequence

MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEASADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFLHHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADESADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWRN

Homology

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BLAST of Clc06G17380 vs. NCBI nr
Match: XP_008453205.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo] >KAA0057942.1 protein DCL [Cucumis melo var. makuwa])

HSP 1 Score: 380.9 bits (977), Expect = 7.7e-102
Identity = 207/236 (87.71%), Postives = 217/236 (91.95%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEA 60
           MAEETIPQL   + EVTNSGTEDMELE T PKGSSDASE  EAAP  NGDANSKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREE- 60

Query: 61  SADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFL 120
           SAD+GVG GKKQK+EKSVEEER+EK GGD K EEEPVPVSLGPKSFRSSVELFDYFYK L
Sbjct: 61  SADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADES 180
           H+WP+NLNVNQYEQMVLVDLLKKGH+EPEKKIGCGIQAFQ+R+HP+WKSKCFFLIR DES
Sbjct: 121 HNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDES 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGR-GGGRWRN 236
           ADDFSFRKCVDHILPLPENFK KSDANRALGGGKHRGGGRGGGGGRGR GGGRWRN
Sbjct: 181 ADDFSFRKCVDHILPLPENFKAKSDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232

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BLAST of Clc06G17380 vs. NCBI nr
Match: XP_038880608.1 (protein EMBRYO DEFECTIVE 514 [Benincasa hispida])

HSP 1 Score: 378.6 bits (971), Expect = 3.8e-101
Identity = 203/239 (84.94%), Postives = 213/239 (89.12%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENTEP----KGSSDASEPNEAAPETNGDANSKRE 60
           MAEETIPQL EN+  VTNSGTEDMELE TEP    K S++ SE  EA P TNGD+ SKRE
Sbjct: 1   MAEETIPQLVENDPAVTNSGTEDMELETTEPETGAKVSTETSEATEAVPVTNGDSTSKRE 60

Query: 61  REEASADEGVGGGKKQKMEKSVEEERLEKAGGDDKG-EEEPVPVSLGPKSFRSSVELFDY 120
           REE SAD+GVG GKKQK+EKSVEEER EK GGD KG EEEPV VSLGPKSF+SS+ELFDY
Sbjct: 61  REEESADDGVGDGKKQKIEKSVEEERFEKVGGDGKGEEEEPVSVSLGPKSFQSSMELFDY 120

Query: 121 FYKFLHHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLI 180
           FYK LHHWPVNLNVNQYEQM LVDLLKKGHVEPEKKIGCGI AFQ+RYHP+WKSKCFFLI
Sbjct: 121 FYKILHHWPVNLNVNQYEQMALVDLLKKGHVEPEKKIGCGIHAFQIRYHPVWKSKCFFLI 180

Query: 181 RADESADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWR 235
           R DESADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWR
Sbjct: 181 REDESADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWR 239

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BLAST of Clc06G17380 vs. NCBI nr
Match: XP_011660085.1 (protein EMBRYO DEFECTIVE 514 [Cucumis sativus] >KGN63669.1 hypothetical protein Csa_014307 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 6.5e-101
Identity = 206/236 (87.29%), Postives = 214/236 (90.68%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEA 60
           MAEETIPQL   + EVTNSGTEDMELE TEPK S+DASE NEAAP  NGDA SKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREE- 60

Query: 61  SADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFL 120
           SAD+GV  GKKQK+EKSVEEERLEK GGD K EEEPVPVSLGPKSFRSSVELFDYFYK L
Sbjct: 61  SADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADES 180
           HHWPVNLNVNQYEQMVLVDLLKKGH+EPEKKIGCGI +FQ+R+HP WKSKCFFLIR DES
Sbjct: 121 HHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDES 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGR-GGGRWRN 236
           ADDFSFRKCVDHILPLPENFKGK DANRALGGGKHRGGGRGGGGGRGR GGGRWRN
Sbjct: 181 ADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232

[Close]

BLAST of Clc06G17380 vs. NCBI nr
Match: XP_022135230.1 (protein EMBRYO DEFECTIVE 514 [Momordica charantia])

HSP 1 Score: 340.5 bits (872), Expect = 1.2e-89
Identity = 187/239 (78.24%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENT----EPKGSSDASEPNEAAPETNGDANSKRE 60
           MAEET PQLAEN+ EVTNS TEDMELE +    EPKG +  SE NEAAPETNGDANSKRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  REEASADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYF 120
           REE +ADE +G  KK K+EKSVEEER+EK  GD KG+E+  PVSLGPKSF SSVE+FDYF
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKSGPVSLGPKSFGSSVEMFDYF 120

Query: 121 YKFLHHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIR 180
           YKFLH+WP NLN+N+YEQMVL++LLKKGHVEPEKKIGCGI AFQ+R HP +KSKC+FLIR
Sbjct: 121 YKFLHYWPANLNLNEYEQMVLLELLKKGHVEPEKKIGCGIHAFQIRNHPTFKSKCYFLIR 180

Query: 181 ADESADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWRN 236
            DES DDFSFRKCVDHILPLPEN K KSDANRALGG KHRGGGRGGGGGRGR GGR RN
Sbjct: 181 EDESVDDFSFRKCVDHILPLPENLKVKSDANRALGGCKHRGGGRGGGGGRGR-GGRSRN 238

[Close]

BLAST of Clc06G17380 vs. NCBI nr
Match: XP_022933555.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata])

HSP 1 Score: 340.1 bits (871), Expect = 1.5e-89
Identity = 184/235 (78.30%), Postives = 195/235 (82.98%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEA 60
           MAEETIPQLAEN  EVTNS  EDMELE+TEPK S   S+ NEAAP TNGDANSKREREE 
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFL 120
            AD+  G  KK K+EKSVEEERLEK   D KGEEE  PVSLGPKSF SSVELFDYFY FL
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADES 180
           H+WP NLNVNQYE MVL+DL+KKGHVEP+KKIGCG++A Q+RYHPMWKSKCFFLIR D S
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWRN 236
           ADDFSFRKCVDHILPLPEN K  SDANRALGGGKHRGGGRG       GGGRWRN
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRG-------GGGRWRN 228

[Close]

BLAST of Clc06G17380 vs. ExPASy Swiss-Prot
Match: Q8L557 (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-46
Identity = 113/216 (52.31%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 15  EVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEASADEGVGGGKKQKM 74
           EV      DME+E   PK  +                + KREREE   +E  G  KKQK+
Sbjct: 14  EVNPDQKVDMEVETATPKAET---------------GDEKREREETEEEENGGESKKQKV 73

Query: 75  EKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFLHHWPVNLNVNQYEQ 134
            +                EE+  PV LGPK F +SV +FDYF KFLH WP +L+VN+YE 
Sbjct: 74  GE----------------EEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEH 133

Query: 135 MVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADESADDFSFRKCVDHIL 194
           MVL+DL+KKGH EPEKKIG GI+ FQVR HPMWKS+CFFL+R D++ADDFSFRKCVD IL
Sbjct: 134 MVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQIL 193

Query: 195 PLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGG 231
           PLPEN K         GGG+  GGGR GG G GRGG
Sbjct: 194 PLPENMKTPGANGNGHGGGRGGGGGRRGGRGGGRGG 198

[Close]

BLAST of Clc06G17380 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.3e-05
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = 0


Query: 31  PKGSSDASEPNEAAPETNGDANSKREREEASADEGVGGGKKQKMEKSVEEERLEKAGGDD 90
           P+G S +  P   A  T  D  +K    E+   E +   +    E S EEE  E+   + 
Sbjct: 36  PRGDSTSLRPRVRALRTESD-GAKIGNSESYGSELLRRPRIASEESSEEEEEEEEE--NS 95

Query: 91  KGEEEPVPVSLGPKSFRSSVELFDYFYKFLH--HWPVNLNVNQYEQMVLVDLLKKGHVEP 150
           +G+E    V    K    +V L  +    LH   +     ++   +  ++++L   H E 
Sbjct: 96  EGDEF---VDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPEC 155

Query: 151 EKKIGCGIQAFQVRYHPMWK-SKCFFLIRADESADDFSFRKCVDHIL 195
           EKKIGCGI    V +HP ++ S+C F++R D    DFS+ KC+  ++
Sbjct: 156 EKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

[Close]

BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A5A7UQ03 (Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002450 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.7e-102
Identity = 207/236 (87.71%), Postives = 217/236 (91.95%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEA 60
           MAEETIPQL   + EVTNSGTEDMELE T PKGSSDASE  EAAP  NGDANSKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREE- 60

Query: 61  SADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFL 120
           SAD+GVG GKKQK+EKSVEEER+EK GGD K EEEPVPVSLGPKSFRSSVELFDYFYK L
Sbjct: 61  SADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADES 180
           H+WP+NLNVNQYEQMVLVDLLKKGH+EPEKKIGCGIQAFQ+R+HP+WKSKCFFLIR DES
Sbjct: 121 HNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDES 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGR-GGGRWRN 236
           ADDFSFRKCVDHILPLPENFK KSDANRALGGGKHRGGGRGGGGGRGR GGGRWRN
Sbjct: 181 ADDFSFRKCVDHILPLPENFKAKSDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232

[Close]

BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A1S3BWT9 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.7e-102
Identity = 207/236 (87.71%), Postives = 217/236 (91.95%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEA 60
           MAEETIPQL   + EVTNSGTEDMELE T PKGSSDASE  EAAP  NGDANSKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREE- 60

Query: 61  SADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFL 120
           SAD+GVG GKKQK+EKSVEEER+EK GGD K EEEPVPVSLGPKSFRSSVELFDYFYK L
Sbjct: 61  SADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADES 180
           H+WP+NLNVNQYEQMVLVDLLKKGH+EPEKKIGCGIQAFQ+R+HP+WKSKCFFLIR DES
Sbjct: 121 HNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDES 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGR-GGGRWRN 236
           ADDFSFRKCVDHILPLPENFK KSDANRALGGGKHRGGGRGGGGGRGR GGGRWRN
Sbjct: 181 ADDFSFRKCVDHILPLPENFKAKSDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232

[Close]

BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A0A0LRN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.2e-101
Identity = 206/236 (87.29%), Postives = 214/236 (90.68%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEA 60
           MAEETIPQL   + EVTNSGTEDMELE TEPK S+DASE NEAAP  NGDA SKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTEPKASTDASEANEAAPVINGDATSKREREE- 60

Query: 61  SADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFL 120
           SAD+GV  GKKQK+EKSVEEERLEK GGD K EEEPVPVSLGPKSFRSSVELFDYFYK L
Sbjct: 61  SADDGVADGKKQKIEKSVEEERLEKLGGDGKCEEEPVPVSLGPKSFRSSVELFDYFYKIL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADES 180
           HHWPVNLNVNQYEQMVLVDLLKKGH+EPEKKIGCGI +FQ+R+HP WKSKCFFLIR DES
Sbjct: 121 HHWPVNLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIHSFQIRFHPEWKSKCFFLIREDES 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGR-GGGRWRN 236
           ADDFSFRKCVDHILPLPENFKGK DANRALGGGKHRGGGRGGGGGRGR GGGRWRN
Sbjct: 181 ADDFSFRKCVDHILPLPENFKGKFDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232

[Close]

BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A6J1C0K4 (protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.6e-90
Identity = 187/239 (78.24%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENT----EPKGSSDASEPNEAAPETNGDANSKRE 60
           MAEET PQLAEN+ EVTNS TEDMELE +    EPKG +  SE NEAAPETNGDANSKRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  REEASADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYF 120
           REE +ADE +G  KK K+EKSVEEER+EK  GD KG+E+  PVSLGPKSF SSVE+FDYF
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKSGPVSLGPKSFGSSVEMFDYF 120

Query: 121 YKFLHHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIR 180
           YKFLH+WP NLN+N+YEQMVL++LLKKGHVEPEKKIGCGI AFQ+R HP +KSKC+FLIR
Sbjct: 121 YKFLHYWPANLNLNEYEQMVLLELLKKGHVEPEKKIGCGIHAFQIRNHPTFKSKCYFLIR 180

Query: 181 ADESADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWRN 236
            DES DDFSFRKCVDHILPLPEN K KSDANRALGG KHRGGGRGGGGGRGR GGR RN
Sbjct: 181 EDESVDDFSFRKCVDHILPLPENLKVKSDANRALGGCKHRGGGRGGGGGRGR-GGRSRN 238

[Close]

BLAST of Clc06G17380 vs. ExPASy TrEMBL
Match: A0A6J1F569 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 7.3e-90
Identity = 184/235 (78.30%), Postives = 195/235 (82.98%), Query Frame = 0


Query: 1   MAEETIPQLAENNLEVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEA 60
           MAEETIPQLAEN  EVTNS  EDMELE+TEPK S   S+ NEAAP TNGDANSKREREE 
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADEGVGGGKKQKMEKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFL 120
            AD+  G  KK K+EKSVEEERLEK   D KGEEE  PVSLGPKSF SSVELFDYFY FL
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKGEEEHGPVSLGPKSFGSSVELFDYFYNFL 120

Query: 121 HHWPVNLNVNQYEQMVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADES 180
           H+WP NLNVNQYE MVL+DL+KKGHVEP+KKIGCG++A Q+RYHPMWKSKCFFLIR D S
Sbjct: 121 HYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDGS 180

Query: 181 ADDFSFRKCVDHILPLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGGGRWRN 236
           ADDFSFRKCVDHILPLPEN K  SDANRALGGGKHRGGGRG       GGGRWRN
Sbjct: 181 ADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRG-------GGGRWRN 228

[Close]

BLAST of Clc06G17380 vs. TAIR 10
Match: AT5G62440.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 188.0 bits (476), Expect = 8.9e-48
Identity = 113/216 (52.31%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 15  EVTNSGTEDMELENTEPKGSSDASEPNEAAPETNGDANSKREREEASADEGVGGGKKQKM 74
           EV      DME+E   PK  +                + KREREE   +E  G  KKQK+
Sbjct: 14  EVNPDQKVDMEVETATPKAET---------------GDEKREREETEEEENGGESKKQKV 73

Query: 75  EKSVEEERLEKAGGDDKGEEEPVPVSLGPKSFRSSVELFDYFYKFLHHWPVNLNVNQYEQ 134
            +                EE+  PV LGPK F +SV +FDYF KFLH WP +L+VN+YE 
Sbjct: 74  GE----------------EEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEH 133

Query: 135 MVLVDLLKKGHVEPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADESADDFSFRKCVDHIL 194
           MVL+DL+KKGH EPEKKIG GI+ FQVR HPMWKS+CFFL+R D++ADDFSFRKCVD IL
Sbjct: 134 MVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQIL 193

Query: 195 PLPENFKGKSDANRALGGGKHRGGGRGGGGGRGRGG 231
           PLPEN K         GGG+  GGGR GG G GRGG
Sbjct: 194 PLPENMKTPGANGNGHGGGRGGGGGRRGGRGGGRGG 198

[Close]

BLAST of Clc06G17380 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 49.7 bits (117), Expect = 3.8e-06
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = 0


Query: 31  PKGSSDASEPNEAAPETNGDANSKREREEASADEGVGGGKKQKMEKSVEEERLEKAGGDD 90
           P+G S +  P   A  T  D  +K    E+   E +   +    E S EEE  E+   + 
Sbjct: 36  PRGDSTSLRPRVRALRTESD-GAKIGNSESYGSELLRRPRIASEESSEEEEEEEEE--NS 95

Query: 91  KGEEEPVPVSLGPKSFRSSVELFDYFYKFLH--HWPVNLNVNQYEQMVLVDLLKKGHVEP 150
           +G+E    V    K    +V L  +    LH   +     ++   +  ++++L   H E 
Sbjct: 96  EGDEF---VDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPEC 155

Query: 151 EKKIGCGIQAFQVRYHPMWK-SKCFFLIRADESADDFSFRKCVDHIL 195
           EKKIGCGI    V +HP ++ S+C F++R D    DFS+ KC+  ++
Sbjct: 156 EKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

[Close]

BLAST of Clc06G17380 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 49.3 bits (116), Expect = 4.9e-06
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = 0


Query: 31  PKGSSDASEPNEAAPETNGDANSKREREEASADEGVGGGKKQKMEKSVEEERLEKAGGDD 90
           P+G S +  P   A  T  D  +K    E+   E +   +    E S EEE  E+   + 
Sbjct: 36  PRGDSTSLRPRVRALRTESD-GAKIGNSESYGSELLRRPRIASEESSEEEEEEEEE--NS 95

Query: 91  KGEEEPVPVSLGPKSFRSSVELFDYFYKFLH--HWPVNLNVNQYEQMVLVDLLKKGHVEP 150
           +G+E    V    K    +V L  +    LH   +     ++   +  ++++L   H E 
Sbjct: 96  EGDEF---VDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPEC 155

Query: 151 EKKIGCGIQAFQVRYHPMWK-SKCFFLIRADESADDFSFRKCVDHIL 195
           EKKIGCGI    V +HP ++ S+C F++R D    DFS+ KC+  ++
Sbjct: 156 EKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

[Close]

BLAST of Clc06G17380 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 45.4 bits (106), Expect = 7.1e-05
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 0


Query: 89   DDKGEEEPVPVSLGPKSFR-SSVELFDYFYK-FLHHWPVNLNVNQYEQMVLVDLLKKGHV 148
            D KG    +P+SL    F   ++EL     K  LH + +N  +N+ ++  LV ++ + H 
Sbjct: 1321 DGKG----IPMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNERDE-GLVKMVLQLHP 1380

Query: 149  EPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADESADDFSFRKCV----DHILPLPENF-K 208
               +KIG G++  +V       S CF ++R D + +DFS+ KCV      I P   NF K
Sbjct: 1381 NSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYK 1440

Query: 209  GKSDANRALGGG 214
             K   N  L  G
Sbjct: 1441 SKYLKNGTLESG 1447

[Close]

BLAST of Clc06G17380 vs. TAIR 10
Match: AT1G63020.2 (nuclear RNA polymerase D1A )

HSP 1 Score: 45.4 bits (106), Expect = 7.1e-05
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 0


Query: 89   DDKGEEEPVPVSLGPKSFR-SSVELFDYFYK-FLHHWPVNLNVNQYEQMVLVDLLKKGHV 148
            D KG    +P+SL    F   ++EL     K  LH + +N  +N+ ++  LV ++ + H 
Sbjct: 1321 DGKG----IPMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNERDE-GLVKMVLQLHP 1380

Query: 149  EPEKKIGCGIQAFQVRYHPMWKSKCFFLIRADESADDFSFRKCV----DHILPLPENF-K 208
               +KIG G++  +V       S CF ++R D + +DFS+ KCV      I P   NF K
Sbjct: 1381 NSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYK 1440

Query: 209  GKSDANRALGGG 214
             K   N  L  G
Sbjct: 1441 SKYLKNGTLESG 1447

The following BLAST results are available for this feature:

BLAST of Clc06G17380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453205.1	7.7e-102	87.71	PREDICTED: protein DCL, chloroplastic [Cucumis melo] >KAA0057942.1 protein DCL [...	[more]
XP_038880608.1	3.8e-101	84.94	protein EMBRYO DEFECTIVE 514 [Benincasa hispida]	[more]
XP_011660085.1	6.5e-101	87.29	protein EMBRYO DEFECTIVE 514 [Cucumis sativus] >KGN63669.1 hypothetical protein ...	[more]
XP_022135230.1	1.2e-89	78.24	protein EMBRYO DEFECTIVE 514 [Momordica charantia]	[more]
XP_022933555.1	1.5e-89	78.30	protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata]	[more]

BLAST of Clc06G17380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L557	1.3e-46	52.31	Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1	[more]
Q9C642	5.3e-05	28.74	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]

BLAST of Clc06G17380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQ03	3.7e-102	87.71	Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002450 P...	[more]
A0A1S3BWT9	3.7e-102	87.71	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1	[more]
A0A0A0LRN9	3.2e-101	87.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009730 PE=4 SV=1	[more]
A0A6J1C0K4	5.6e-90	78.24	protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4...	[more]
A0A6J1F569	7.3e-90	78.30	protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 ...	[more]

BLAST of Clc06G17380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62440.1	8.9e-48	52.31	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	3.8e-06	28.74	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	4.9e-06	28.74	Protein of unknown function (DUF3223)	[more]
AT1G63020.1	7.1e-05	31.82	nuclear RNA polymerase D1A	[more]
AT1G63020.2	7.1e-05	31.82	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF11523	DUF3223	coord: 118..190 e-value: 1.4E-25 score: 89.7
None	No IPR available	GENE3D	3.10.450.40		coord: 95..193 e-value: 1.8E-27 score: 97.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..235
None	No IPR available	PANTHER	PTHR33415:SF12	PROTEIN EMBRYO DEFECTIVE 514	coord: 15..224
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 15..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G17380.2	Clc06G17380.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017126	nucleologenesis
cellular_component	GO:0005634	nucleus