Clc06G02620 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G02620
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	major pollen allergen Ole e 6-like
Location	ClcChr06: 2557573 .. 2558375 (-)
RNA-Seq Expression	Clc06G02620
Synteny	Clc06G02620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAAAGCAAGACTTGAAACATCACCAAAGGCAAGAACACAGCAAAGAACAATGGGGAAGAAGATGATGATTGCAGTGTTATTGATGTGCATTGTGGTTGTAGCCATTGCCAATAAGGAGGAGGTGGAAAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTCAAACTGGCAATGGCCAAAGCTTTTGTGAAGTCAAATGCGATGAAGATTGTGATGAAAAACAAACTGCTGGTACTCTCTCTCTTCTCTTCGTCTTTCTTCTAATAACATCGATACCATAATGCATTAACATTTCTATTCCATCATTAAAACATATTCCACAATTTATTCTATTTGAGTTTCATTTTCTCATGTCAATTTAAATTGTTTGTGTTTGTTTTACAGATAAGTTAAACATCGAATTACATTGAAGAATGAGGAACAAAAGGAAAGAAGATCTCCTGATAATGATGAAGTAGTAATATTATTGTATGAAAATAGAGCTTGTAATGTGATTTTAATATTAAAATTTATAAAGCTCTTGGTCTTTGGTGTTAATTATGATCTGTGAATCGACCATTGTCATGTGGTGGGTGTTATCTTTACTAGAAAAAAAAAATATATATATATAATTATAATTTCCTATAAATTGTTGATCAACCCCTATACCCATTTGCATTTTGTTTAATCTTTATTCTAATTTATATATATGATCACAAAATTCAATTGATCATAGTTTAAATGTTCTTATGTAATAGAATATGGAAATGGGAGAAAATCTTTCACACC

mRNA sequence

CACAAAAGCAAGACTTGAAACATCACCAAAGGCAAGAACACAGCAAAGAACAATGGGGAAGAAGATGATGATTGCAGTGTTATTGATGTGCATTGTGGTTGTAGCCATTGCCAATAAGGAGGAGGTGGAAAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTCAAACTGGCAATGGCCAAAGCTTTTGTGAAGTCAAATGCGATGAAGATTGTGATGAAAAACAAACTGCTGATAAGTTAAACATCGAATTACATTGAAGAATGAGGAACAAAAGGAAAGAAGATCTCCTGATAATGATGAAGTAGTAATATTATTGTATGAAAATAGAGCTTGTAATGTGATTTTAATATTAAAATTTATAAAGCTCTTGGTCTTTGGTGTTAATTATGATCTGTGAATCGACCATTGTCATGTGGTGGGTGTTATCTTTACTAGAAAAAAAAAATATATATATATAATTATAATTTCCTATAAATTGTTGATCAACCCCTATACCCATTTGCATTTTGTTTAATCTTTATTCTAATTTATATATATGATCACAAAATTCAATTGATCATAGTTTAAATGTTCTTATGTAATAGAATATGGAAATGGGAGAAAATCTTTCACACC

Coding sequence (CDS)

ATGGGGAAGAAGATGATGATTGCAGTGTTATTGATGTGCATTGTGGTTGTAGCCATTGCCAATAAGGAGGAGGTGGAAAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTCAAACTGGCAATGGCCAAAGCTTTTGTGAAGTCAAATGCGATGAAGATTGTGATGAAAAACAAACTGCTGATAAGTTAAACATCGAATTACATTGA

Protein sequence

MGKKMMIAVLLMCIVVVAIANKEEVEKYEAKFDAKYKSCYETCEKECLQTGNGQSFCEVKCDEDCDEKQTADKLNIELH

Homology

[Close]

BLAST of Clc06G02620 vs. NCBI nr
Match: XP_038891517.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-25
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1  MGKKMMIAVLLMCIVVV-----AIANKEEVEKYEAKFDAKYKSCYETCEKECLQTGNGQS 60
          M KKMM AV LMCIVVV     A AN++EV KYEAKFDAKYKSCYETCEKECL  G+GQS
Sbjct: 1  MAKKMM-AVFLMCIVVVAALQFATANEDEVTKYEAKFDAKYKSCYETCEKECLANGSGQS 60

Query: 61 FCEVKCDEDCDEKQTADKLNIELH 80
          FCEVKCDEDCDEK+ ADKL+I+LH
Sbjct: 61 FCEVKCDEDCDEKEVADKLHIKLH 83

[Close]

BLAST of Clc06G02620 vs. NCBI nr
Match: XP_038906677.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 9.7e-25
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 4  KMMIAVLLMCIVVVA----IANKEEVEKYEAKFDAKYKSCYETCEKECLQTGNGQSFCEV 63
          K +IAV  MCIVV+A        EEVEKYEAKF+AKYKSCYETCEKECL+ GNGQSFCEV
Sbjct: 3  KKIIAVFFMCIVVMAAFQFATANEEVEKYEAKFEAKYKSCYETCEKECLEGGNGQSFCEV 62

Query: 64 KCDEDCDEKQTADKLNIELH 80
          KCDEDCDEK+TADKL+IELH
Sbjct: 63 KCDEDCDEKETADKLHIELH 82

[Close]

BLAST of Clc06G02620 vs. NCBI nr
Match: XP_004146471.1 (major pollen allergen Ole e 6 [Cucumis sativus] >KGN50739.1 hypothetical protein Csa_005859 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 6  MIAVLLMCIVVVAI-----ANKEEVEKYEAKFDAKYKSCYETCEKECLQTGNGQSFCEVK 65
          MIA+ LMCIVVVA      ANKE+V KYEAKFDAKYKSC+ETCEKECL+ G+GQS+CEVK
Sbjct: 5  MIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSYCEVK 64

Query: 66 CDEDCDEKQTADKLNIELH 80
          CDEDCDEK+ ADKL+IELH
Sbjct: 65 CDEDCDEKEAADKLHIELH 83

[Close]

BLAST of Clc06G02620 vs. NCBI nr
Match: XP_038875643.1 (major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 4.8e-24
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 4  KMMIAVLLMCIVVVAIAN----KEEVEKYEAKFDAKYKSCYETCEKECLQTGNGQSFCEV 63
          K MIAV  MCIVV+A        EEV+KYEAKFDAKYKSCYETCEKECL+ G+GQ+FCEV
Sbjct: 3  KKMIAVFFMCIVVMAALQFATANEEVDKYEAKFDAKYKSCYETCEKECLENGSGQTFCEV 62

Query: 64 KCDEDCDEKQTADKLNIELH 80
          KCDEDCDEK+ ADKL+IELH
Sbjct: 63 KCDEDCDEKEKADKLHIELH 82

[Close]

BLAST of Clc06G02620 vs. NCBI nr
Match: XP_038906682.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 4  KMMIAVLLMCIVVVAIAN----KEEVEKYEAKFDAKYKSCYETCEKECLQTGNGQSFCEV 63
          K MIAV LMCIVV+A        EEV KYEAKFDAKYKSCYETCEKECL+ GNGQSFCEV
Sbjct: 3  KKMIAVFLMCIVVMAALQFTTANEEVAKYEAKFDAKYKSCYETCEKECLEKGNGQSFCEV 62

Query: 64 KCDEDCDEKQTADKLNIE 78
          KCDEDCDEK+TADKL+I+
Sbjct: 63 KCDEDCDEKETADKLHIK 80

[Close]

BLAST of Clc06G02620 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-08
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 33 DAKYKSCYETCEKECLQTGNGQSFCEVKCDEDCDEKQTADKL 75
          +A++K CY+TC KEC   GNG +FCE+KCD DC  K   +KL
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of Clc06G02620 vs. ExPASy TrEMBL
Match: A0A0A0KPA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 6  MIAVLLMCIVVVAI-----ANKEEVEKYEAKFDAKYKSCYETCEKECLQTGNGQSFCEVK 65
          MIA+ LMCIVVVA      ANKE+V KYEAKFDAKYKSC+ETCEKECL+ G+GQS+CEVK
Sbjct: 5  MIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSYCEVK 64

Query: 66 CDEDCDEKQTADKLNIELH 80
          CDEDCDEK+ ADKL+IELH
Sbjct: 65 CDEDCDEKEAADKLHIELH 83

[Close]

BLAST of Clc06G02620 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 4  KMMIAVLLMCIVVVAI-----ANKE-EVEKYEAKFDAKYKSCYETCEKECLQTGNGQSFC 63
          K MIA+ LMCIVVVA      ANKE EV KYEAKFDAKYKSC++TCEKECL+ G+GQS+C
Sbjct: 3  KKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQSYC 62

Query: 64 EVKCDEDCDEKQTADKLNIELH 80
          EVKCDEDC+EK+ ADKL+IELH
Sbjct: 63 EVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of Clc06G02620 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 4  KMMIAVLLMCIVVVAI-----ANKE-EVEKYEAKFDAKYKSCYETCEKECLQTGNGQSFC 63
          K MIA+ LMCIVVVA      ANKE EV KYEAKFDAKYKSC++TCEKECL+ G+GQS+C
Sbjct: 3  KKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQSYC 62

Query: 64 EVKCDEDCDEKQTADKLNIELH 80
          EVKCDEDC+EK+ ADKL+IELH
Sbjct: 63 EVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of Clc06G02620 vs. ExPASy TrEMBL
Match: A0A0A0K9Z9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MGKKMMIAVLLMCIVVVA-----IANKEE-VEKYEAKFDAKYKSCYETCEKECLQTG-NG 60
          M KKMM AV LMCIVVVA     +AN+E+ V KYEAKFDAKYKSCYETCEKECL+   NG
Sbjct: 1  MAKKMM-AVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNG 60

Query: 61 QSFCEVKCDEDCDEKQTADKLNIELH 80
          +SFCEVKCDEDC EK+ ADKL+IELH
Sbjct: 61 ESFCEVKCDEDCSEKEAADKLHIELH 85

[Close]

BLAST of Clc06G02620 vs. ExPASy TrEMBL
Match: A0A5D3DM52 (Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002640 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1  MGKKMMIAVLLMCIVVVA-----IANKEE-VEKYEAKFDAKYKSCYETCEKECLQTG-NG 60
          M KKMM  VLL+CIVV+A     IAN EE  +KYE+KFDAKYKSCYE+CEKECLQ G NG
Sbjct: 1  MAKKMM-GVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNG 60

Query: 61 QSFCEVKCDEDCDEKQTADKLNIE 78
          QSFCEVKCDEDCDEK+ ADKL I+
Sbjct: 61 QSFCEVKCDEDCDEKEVADKLRID 83

The following BLAST results are available for this feature:

BLAST of Clc06G02620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891517.1	3.3e-25	77.38	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_038906677.1	9.7e-25	77.50	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]
XP_004146471.1	2.2e-24	77.22	major pollen allergen Ole e 6 [Cucumis sativus] >KGN50739.1 hypothetical protein...	[more]
XP_038875643.1	4.8e-24	75.00	major pollen allergen Ole e 6-like [Benincasa hispida] >XP_038906512.1 major pol...	[more]
XP_038906682.1	1.1e-23	78.21	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]

BLAST of Clc06G02620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	5.0e-08	54.76	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of Clc06G02620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA7	1.0e-24	77.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222980 PE=4 SV=1	[more]
A0A5D3BCS2	2.0e-23	74.39	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C530	2.0e-23	74.39	major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ...	[more]
A0A0A0K9Z9	2.2e-22	74.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106720 PE=4 SV=1	[more]
A0A5D3DM52	4.1e-21	73.81	Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Clc06G02620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 39..75 e-value: 3.4E-13 score: 49.3
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..79
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 33..77 e-value: 6.6E-16 score: 59.6
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 33..74
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G02620.1	Clc06G02620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016121	carotene catabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0010223	secondary shoot formation
biological_process	GO:1901601	strigolactone biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen