Clc05G29000 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G29000
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr05: 35900195 .. 35900855 (-)
RNA-Seq ExpressionClc05G29000
SyntenyClc05G29000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTTTCGATTTTCATCCACCCAAACGATAGAATAGACGAGACTCGGTAGAAGTAGAGCTCGGTTTTTTATTTTATTTTTTAATTTTCCTCTTTCTCAGTGCCTCCCATTCTTTCGTGTCTTAGATCCTCCAAATTTTCTTCTGACATTTTTTTTTTTTTTTTTTTAAAGATTTTGTTTTTTGAGGGAGAAAGTGCACTGTTCTCAAGTATGAGTGATTTTCATTCATGGAATCGCTTTTGATTGCCTATTATTTTGGTGGATTTTTTTATGATTAGGCCCTTTTTTTTGGAGGTTGAAGAGGAAGTGAGTTTCATTTTGTGGTTACTGATGATGACTGCGGCGATGGTGAAGAAGAAGAAGAAGGCCTTTCTTTTGACAAACGAAAGGGTTCAGTTAAAGGAAGAAAAATATGTCCCCATTCCCCATTTTTGCTGCTGCTTGTGATTGTCAATGACAAGAAGGTTAGCTGTATGCTAAAAGATTGTGGAAGAAAGAGAAAGTAAGAGAGAACCCTCCTTTTTTCTTTTCTTTTCTTTTTCTTTCTAATTTTCGCACGTATTTTTCTGTCATTGCGTTTGAATGATTCAATCTTGGGTTGCTGAAAGTGAATTCAATAGCTCGTCTTTTGTTTTTCTATTCCAGGGATTTGGGGTAA

mRNA sequence

ATGAGGGTTTCGATTTTCATCCACCCAAACGATAGAATAGACGAGACTCGAGGAAGTGAGTTTCATTTTGTGGTTACTGATGATGACTGCGGCGATGGTGAAGAAGAAGAAGAAGGCCTTTCTTTTGACAAACGAAAGGGTTCAGTTAAAGGAAGAAAAATATGTCCCCATTCCCCATTTTTGCTGCTGCTTGTGATTGTCAATGACAAGAAGGTTAGCTGTATGCTAAAAGATTGTGGAAGAAAGAGAAAGGATTTGGGGTAA

Coding sequence (CDS)

ATGAGGGTTTCGATTTTCATCCACCCAAACGATAGAATAGACGAGACTCGAGGAAGTGAGTTTCATTTTGTGGTTACTGATGATGACTGCGGCGATGGTGAAGAAGAAGAAGAAGGCCTTTCTTTTGACAAACGAAAGGGTTCAGTTAAAGGAAGAAAAATATGTCCCCATTCCCCATTTTTGCTGCTGCTTGTGATTGTCAATGACAAGAAGGTTAGCTGTATGCTAAAAGATTGTGGAAGAAAGAGAAAGGATTTGGGGTAA

Protein sequence

MRVSIFIHPNDRIDETRGSEFHFVVTDDDCGDGEEEEEGLSFDKRKGSVKGRKICPHSPFLLLLVIVNDKKVSCMLKDCGRKRKDLG
Homology
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BLAST of Clc05G29000 vs. NCBI nr
Match: KAG7024312.1 (U-box domain-containing protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 23 FVVTDDDCGDGEEEEE-GLSFDKRKGSVKGRKICPHSPFLLLLVIVNDK 71
          FVVTDDD GDGEEEEE GLS D+ +GS +  K CP SPFLLLL+IV++K
Sbjct: 18 FVVTDDDGGDGEEEEEGGLSSDQPRGSDEETKECPRSPFLLLLLIVSEK 66

The following BLAST results are available for this feature:
BLAST of Clc05G29000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024312.15.9e-0769.39U-box domain-containing protein 31, partial [Cucurbita argyrosperma subsp. argyr... [more]
BLAST of Clc05G29000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G29000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc05G29000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G29000.2Clc05G29000.2mRNA