Clc05G24760 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGTCTCAATAAGTTTAGAAATTTTAAATCTCATTTTAAACCTTCAAATTTCATCCTCCTTCTTGCATCTCTCTCAAATCAACCTTAAAACTAATCAAAAACTAATCCTAGAAAAATATGTCCAACTCCGGTGACCGTCGCAACTTTCTGTATTTCATTTTAGGCGATGGCAAAGGTTCATACTTTACCTATAAATTTCAAAGTTCAGGAACTAAGTTCGTGATTTGTTATTTAAAAAAAAAAAAAAAAAAAGAATTGAATTTTGAATTTACAGTGGCGGAGCTGATGTTGTGGAAGAACAAGAGAGAATCGGCGGCGATGGCAGCCGGAATCAGTGGCGTTTGGTTGGTGGTGGAGGTTTTAGATTACCATTTTGTTACTCTTGTTTGCCATATTCTCATCATCCTCATGTTTCTTCTCTTCTTATGGAAGAAATTAGCATTTTTTCCCATCTCCTGGTAACACTATTTTTGCTTTTCATTTTAATTCTCATTTCTTATGCCTTCATTTTAACCATACAAAATACTCCTCACCTTTATCTTTTTTAAAAACAAATATTTTTAATCTTTCCAAGGTTGCAACATTACTCTTTCCTCTTTAACCTTTCGCAAACGTGTCAAAACTATTTTTTTGGTATAAAATTTTATGAGAATATTGGATGAAAATCTAGATCTAAAATGATTTGTGATAGTGATCACTCAGAACAAAAATTAGAGTGTTGACATTGTCATATTGTGTGAGGTTTATAAGTACCTCACATCTTAACAGTAAACAGATTTGTATCATAAATATTGTTTTCAAACATTTATAAAAGATTAAGATACTTTAAAAAAGAATGAAGGTAATTTTGAAACAAATGACAAGAGTTAGAGGTATTTTATGTCATTTAGTAGAGGTGAAAATTTGTTTGGTTTTTTCGATTTTGGGTACACCAAGAACCAAACTAAATGATTGAGTTTATAAAGAAAGTAACCAAACTAATGTCCAATAAATAAACCAATGGATTAGTTTTTATTCAATTTGGTTCTTGATTTTGGATGTTTCTTTTATACCAAAATCCAAATCAAACTAATAGATGGACTTGGTTGGATTTGGATTTTTGATTGTAGTCCTATAATTTAGTGTTAATTTGAAACCACTTATATTGGTAAGATATTGTTTATATATTTATTCTAATGGAATAGGAGTCCACCCAATGCCCAAGATTTTGAAATCTCAGAGTCCACTTTCACACATCTCTTTCAAACATTCAACTGGTTGCTCCACAACTTCTTTGAAATTTCCAGTGGCCATGACTTTAAGCTCTTTGCAATGGTATACCCTCAATCTAATCTCATCTTTTCCCTTAATTCCTTTAAATATATATATACCAATGTTGGTTAAAAATCACTTTTAGTTCCTAAACGTTCATAAAAGTAACTATTTAGTCATCGTATTTTCAATTTTGTAACTATTTAATCCCTAAAATTTACTATGTAAAAATTTTAAGTCTTTATACTTTAAAGTTGGTACGTAACAATTTAGTCCTTATTAAGAAATTAGTGTTAAAATTTAATAAGATTTCTTACATAAATAAACTGATAAACTAATTAGAGACTCAACAATTTTACAAAATCCATAGTCTATGTCATAAAATAATAAAAATTAACATCTAATTTTGATAATTTTTTCTACGTTGGGGACTAAATTGTTACAAATTTAAAAGTACAAGTACTAAATTGTTACATACTAAAGTTCAGGGACTACGTTACAAACTAAAGTTTAAGGACCAAATTGTTACTCCAATGAAAGTATAGGGACCAAAAGTGTTTTTTACCTATATATATATATTGGGCAGATTTAGAAAACCACCCTATCGTATAGTGATAGTTACAATTATACCCTTCAAACTTTTAATGGTAAAAATCGAGACTTCAAACTTATAACATGGATAAATTAGGACCCTCAAAGTTACATGATTTAGAAATTTCATGGTTCTATTTTTGTCATTTGGAGGTACTTCACTTCCTACAATTAATTGAAGGTCTAATTTTAACACTTGCGTAAGTTTAAGAACTCAACTTTTACAATTAAAAGTGTGAGGGTGTGTCTATTCTAGGCTACTTAAAAAAAAATAAAAAATAAAAAAAATTCAATTTTTTTAATTTTTTATGCAGGTAATGGGTAGCCTTTGGTTGCTATCGGTCATTGGGGAGCTGGTCAACTCATTCAATCTCATGTACATTGGTACACTCTCCTTTCTATCTTTACAAATACAAAAAATCATTCGCGCTACAATGTGATTGACAATTTTGAATCGTTGACATGAACTCTATTAAAATTGACATATTTTTTTTTTTCTTTTTTGGTTCTAATATGTCGAACAAACTGGAATGAATCAGTGTTTGTGAGCTTACAAGTAGTTCCTGTTGTATACAACAAATACAAGGAGGAACTCAACCAGTTTGCCTCCATCATCAAATCTAATATGGATTACTACTTCCATATTATTTATTCCAATTTTCTCAGCAAAATTCCAAGGTCGCACCAAATCAAGCAATCTTAAATTCTTAATATTATCATAACAATAAATACACTCCATATTATCTAAACATCAACTTTGTATCGAATTTTTCATTAATTTCACAAAGAGTTATTGGGTATCCACCTAATGAAACTTCATACTGCATAATAATTTGGGCCAAAGATATAAATATATGAAATAGCAATATGTTGTCCATATTTCGATTATCAATATTCTAGCAGCATTTTGACACTAAATTTGAGATGTTAATTTTAATTCCATTCAATGTCACATGTTGAGAAATTTTGAATTAATTTTAATTGCTCCTTGAATTGAGACATTATGATGTATGAATCATGAAAAAAAGGCCCAACAATTATATTTATAATATTAGAAACTGTGAAATTTTGTATATCATTGAATAATTAACTTATTCTGAATGCAATGAAGTAAAGAATAAATAGACACCATCATACCAAACAAAAACAAAGGAAAGAATTGTAAAAGAGAAAAAAAGACAGAAAAATAATAATTAGAGCGAACCTTAATTAACTGTTTTATATTATTAAAAAGACGTGTTTATCTTTTTATTCTAAAATTAAATTGGAAATTGGAAATCGTGTTCAATGAGGGACTAATAATCAATTAGTAATAACACTATTTTAAATCTGAACAAGTGTCGTAATTTCTATCATAGGAATATAGGATAGATTTTCATTTTAAAAGATAGCAATTAAAATAACATTTTCATATGCTGAATAGAAAACTTATATAAAAACGTATATATGTTCGGTAATGAATGAAAAGTAAATGAAAACAGAGAGAAAAAAAAAATTGGATTTATTTATTTATTTGTTAAGATCAGTAAGTAAATTAGGGTAAGAATTGCAATAAGTTTTTACTTAGTTTTGGGTTGAATTTGATAAAATGAAAATTTTATATTGAAAATGGATACAATTTACTAAATTCACCTTTAGAAGTTGATTTTTTTTTTTTTTTTTTTTGATATCATGATTTAAGAGCTGGAAAATATTTGAATTCAAGCAAGAGAATAATTCAAACAGAACACATTTATAAAGCTAGAAAAAGTCAGAAAAAATGGGAATATATTTTAAATCCACATCTTTTTATAGTCAGGATTATTATTCTTTAATTAGGTTGAGAATAATAGGGTCCACAATTTACCCTATGCACCAGCAATTGACCCAATTGCTTTTTCTTTTTCTTTTCAATTTCCAAATGATGTTTTAATTGATATTGACCCACAAAAATTATTTTCCAAATATTTGAAATGGCTAGTCTTTATATTTCTTTTTAAAAATATTTAAATTACTCTTTTTTTTCACTCGATAGTCATTCAAAATTCCAAATATTGTCAAGCATGCATTTTGACGAATCATGCATAACTTTTGAATGATATTTGATGGATAAATTTAATATATTTGAGTTTTTGCACCAGAACTTGACCTAGCATCCTTTGGACGTGGAAATTACTTAAACAAGATTCCTAAATGTTTTTGTTTTCATTTGTTAAGATGTTTGTTATTAATTAACAAGTGAAAATTTAATAATACAATACATTTTCGCAATATTAAATATGTCGGTGAAAGAAAATGTATTAATAAAGACCGAATAATGTGGAAGCTGACTTTGATTTCTCGGCCGGATCTTTCATAATGGAAAAAAGACGCATAAAAGTTGAAGGAAAATTTCATGGTTTACAACATCACTAACAACTTCACTTAACCATAACTTTAGTATCTTACCCCCTAATTTTATGATTGTGTTAATAAATAGATCAACAAAACAATAATTCTCTATTTTTCCAATATAATATGTCTTTCTAATTTAATTTTTAGGCTCCAAAACTCTTATTTCACAAAATCAAAATTATTTGAATGATGCTACCATAATATTATTGTTAATGTTTAAATGAGACAGTATTGTAATTATTAATGTCTTATTTGATAACTATTTGATTTTTTAAAATAAAGTTTTTTTTTTTTTTTTTTTAAAATTTCTTACTATAATTTGTATCTTTTGAAAGTAAAGTAAAGGAATTGAATTTTTAACCAAATTATAAAAAGTTTTTTAAAAAATAGATAAATGGATAAGAGTTAATTTTACCAAATGAAAAAAAGGAAAAGTAAAAGGCAAGAAGTCAACAAAAGTTGTTTGTTTATTTATTTTTATTTTTTATTTTTTTTCTGTGAGAGTTCTTCATATTGTGTCCAGGTGGCATGATGGTATTGATCGGTGGTTTGTATTTGATATTAAAACCCTTGACTTGGCCTTCATTCAATACAGGTTTCCAATTCTAATCCAATCTCTTAACCTACCGATCGAAGTAGAGAAAAAGGGAGGGTTTTTAGATGGTGAGGGAATGGAGAGATTTCGGCGGCGGCGGCGGCGGAGGAGGGTTGATGAACAGTTCGATAGTTCTGATATTTTGGGTGGCGGTGGTTTCGATTTCGATTATTACAACGGTCATATTCTCCTGCACTGGCGGCGGCCCTAAAGATAAAGACACGTCACACCCCGATACTTACGGTGCTGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA ATGGTGGCGGAGCTGATGTTGTGGAAGAACAAGAGAGAATCGGCGGCGATGGCAGCCGGAATCAGTGGCGTTTGGTTGGTGGTGGAGGTTTTAGATTACCATTTTGTTACTCTTGTTTGCCATATTCTCATCATCCTCATGAGTCCACCCAATGCCCAAGATTTTGAAATCTCAGAGTCCACTTTCACACATCTCTTTCAAACATTCAACTGGTTGCTCCACAACTTCTTTGAAATTTCCAGTGGCCATGACTTTAAGCTCTTTGCAATGGTAATGGGTAGCCTTTGGTTGCTATCGGTCATTGGGGAGCTGGTCAACTCATTCAATCTCATGTACATTGTGTTTGTGAGCTTACAAGTAGTTCCTGTTGTATACAACAAATACAAGGAGGAACTCAACCAGTTTGCCTCCATCATCAAATCTAATATGGATTACTACTTCCATATTATTTATTCCAATTTTCTCAGCAAAATTCCAAGGTTTCCAATTCTAATCCAATCTCTTAACCTACCGATCGAAATGGTGAGGGAATGGAGAGATTTCGGCGGCGGCGGCGGCGGAGGAGGGTTGATGAACAGTTCGATAGTTCTGATATTTTGGGTGGCGGTGGTTTCGATTTCGATTATTACAACGGTCATATTCTCCTGCACTGGCGGCGGCCCTAAAGATAAAGACACGTCACACCCCGATACTTACGGTGCTGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA ATGGTGGCGGAGCTGATGTTGTGGAAGAACAAGAGAGAATCGGCGGCGATGGCAGCCGGAATCAGTGGCGTTTGGTTGGTGGTGGAGGTTTTAGATTACCATTTTGTTACTCTTGTTTGCCATATTCTCATCATCCTCATGAGTCCACCCAATGCCCAAGATTTTGAAATCTCAGAGTCCACTTTCACACATCTCTTTCAAACATTCAACTGGTTGCTCCACAACTTCTTTGAAATTTCCAGTGGCCATGACTTTAAGCTCTTTGCAATGGTAATGGGTAGCCTTTGGTTGCTATCGGTCATTGGGGAGCTGGTCAACTCATTCAATCTCATGTACATTGTGTTTGTGAGCTTACAAGTAGTTCCTGTTGTATACAACAAATACAAGGAGGAACTCAACCAGTTTGCCTCCATCATCAAATCTAATATGGATTACTACTTCCATATTATTTATTCCAATTTTCTCAGCAAAATTCCAAGGTTTCCAATTCTAATCCAATCTCTTAACCTACCGATCGAAATGGTGAGGGAATGGAGAGATTTCGGCGGCGGCGGCGGCGGAGGAGGGTTGATGAACAGTTCGATAGTTCTGATATTTTGGGTGGCGGTGGTTTCGATTTCGATTATTACAACGGTCATATTCTCCTGCACTGGCGGCGGCCCTAAAGATAAAGACACGTCACACCCCGATACTTACGGTGCTGCATGTGCTGCCGGCTGTGGAGCCGGCTGCGGCGGTTGA MVAELMLWKNKRESAAMAAGISGVWLVVEVLDYHFVTLVCHILIILMSPPNAQDFEISESTFTHLFQTFNWLLHNFFEISSGHDFKLFAMVMGSLWLLSVIGELVNSFNLMYIVFVSLQVVPVVYNKYKEELNQFASIIKSNMDYYFHIIYSNFLSKIPRFPILIQSLNLPIEMVREWRDFGGGGGGGGLMNSSIVLIFWVAVVSISIITTVIFSCTGGGPKDKDTSHPDTYGAACAAGCGAGCGG Homology
BLAST of Clc05G24760 vs. NCBI nr
Match: KAA0034583.1 (reticulon-like protein B14 [Cucumis melo var. makuwa] >TYK09135.1 reticulon-like protein B14 [Cucumis melo var. makuwa]) HSP 1 Score: 243.0 bits (619), Expect = 2.6e-60 Identity = 127/182 (69.78%), Postives = 148/182 (81.32%), Query Frame = 0
BLAST of Clc05G24760 vs. NCBI nr
Match: XP_022945840.1 (reticulon-like protein B14 isoform X3 [Cucurbita moschata]) HSP 1 Score: 221.1 bits (562), Expect = 1.1e-53 Identity = 110/174 (63.22%), Postives = 139/174 (79.89%), Query Frame = 0
BLAST of Clc05G24760 vs. NCBI nr
Match: XP_022968135.1 (reticulon-like protein B14 [Cucurbita maxima]) HSP 1 Score: 219.9 bits (559), Expect = 2.4e-53 Identity = 109/174 (62.64%), Postives = 138/174 (79.31%), Query Frame = 0
BLAST of Clc05G24760 vs. NCBI nr
Match: KAG6573940.1 (Reticulon-like protein B14, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 218.0 bits (554), Expect = 9.0e-53 Identity = 107/174 (61.49%), Postives = 138/174 (79.31%), Query Frame = 0
BLAST of Clc05G24760 vs. NCBI nr
Match: XP_022150651.1 (reticulon-like protein B14 [Momordica charantia]) HSP 1 Score: 208.8 bits (530), Expect = 5.5e-50 Identity = 108/174 (62.07%), Postives = 127/174 (72.99%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy Swiss-Prot
Match: A2RVT6 (Reticulon-like protein B14 OS=Arabidopsis thaliana OX=3702 GN=RTNLB14 PE=2 SV=2) HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26 Identity = 63/175 (36.00%), Postives = 100/175 (57.14%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy Swiss-Prot
Match: Q9LJQ5 (Reticulon-like protein B9 OS=Arabidopsis thaliana OX=3702 GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 8.9e-19 Identity = 55/178 (30.90%), Postives = 100/178 (56.18%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.5e-18 Identity = 53/180 (29.44%), Postives = 91/180 (50.56%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy Swiss-Prot
Match: Q6DBN4 (Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 4.4e-18 Identity = 53/176 (30.11%), Postives = 93/176 (52.84%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy Swiss-Prot
Match: O82352 (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 2.0e-15 Identity = 49/176 (27.84%), Postives = 90/176 (51.14%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy TrEMBL
Match: A0A5D3CCB1 (Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001260 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 1.3e-60 Identity = 127/182 (69.78%), Postives = 148/182 (81.32%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy TrEMBL
Match: A0A6J1G247 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449961 PE=4 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 5.2e-54 Identity = 110/174 (63.22%), Postives = 139/174 (79.89%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy TrEMBL
Match: A0A6J1HWC4 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467461 PE=4 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53 Identity = 109/174 (62.64%), Postives = 138/174 (79.31%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy TrEMBL
Match: A0A6J1DC54 (Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111018734 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 2.7e-50 Identity = 108/174 (62.07%), Postives = 127/174 (72.99%), Query Frame = 0
BLAST of Clc05G24760 vs. ExPASy TrEMBL
Match: A0A5N6RF69 (Reticulon-like protein OS=Carpinus fangiana OX=176857 GN=FH972_015839 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 5.9e-34 Identity = 78/177 (44.07%), Postives = 114/177 (64.41%), Query Frame = 0
BLAST of Clc05G24760 vs. TAIR 10
Match: AT1G68230.1 (Reticulon family protein ) HSP 1 Score: 98.2 bits (243), Expect = 9.7e-21 Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = 0
BLAST of Clc05G24760 vs. TAIR 10
Match: AT3G18260.1 (Reticulon family protein ) HSP 1 Score: 95.5 bits (236), Expect = 6.3e-20 Identity = 55/178 (30.90%), Postives = 100/178 (56.18%), Query Frame = 0
BLAST of Clc05G24760 vs. TAIR 10
Match: AT4G23630.1 (VIRB2-interacting protein 1 ) HSP 1 Score: 94.7 bits (234), Expect = 1.1e-19 Identity = 53/180 (29.44%), Postives = 91/180 (50.56%), Query Frame = 0
BLAST of Clc05G24760 vs. TAIR 10
Match: AT1G68230.2 (Reticulon family protein ) HSP 1 Score: 94.0 bits (232), Expect = 1.8e-19 Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 0
BLAST of Clc05G24760 vs. TAIR 10
Match: AT3G61560.1 (Reticulon family protein ) HSP 1 Score: 93.2 bits (230), Expect = 3.1e-19 Identity = 53/176 (30.11%), Postives = 93/176 (52.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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