Clc04G08940 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G08940
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	pathogenesis-related protein 1-like
Location	ClcChr04: 22628602 .. 22629297 (+)
RNA-Seq Expression	Clc04G08940
Synteny	Clc04G08940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCAACCTTCACTTCTTCCTCCTCTCCTTCTCTGCACCGCTATCCTCCTTCCAATCGTTGCGTCGCAGCAACAATCCCCTTCCAATGCCGGAAATAGTCAATCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCCGCCGTCTCGACGCTCTACGCCTTTCTTCGCTCGCGAATTTCTGTCAGCGCACAACAAAGTAAGGATGAACGTGACACATCCTCTGTTAAATTGGGACAGAAAATTGGCTCGATACGCCCGTCGCTGGGGAATGAAGCGCGTTGCCGATTGCAAAATGATCCATTCGTACGGTCCGTATGGTGAGAATCTGTTTTGGGGAGCACTTGATCACTGGACACCGACGGAAGCGGTGGAATCGTGGTCGAAGGAGAAGCAATTTTACAACCCACAAAATAACGCCTGCTCTGAGGGCGAAATGTGCGGCCATTACACCCAAATCATTTGGAAAGATTCAATCAAACTTGGATGCACTCGCGTCAAATGCCAAACTGGAGGCGTTTTGATGATTTGTGAGTACGATCCGCCTGGAAATTATGTGAATGAGAGCCCATTCGCCACCGCCAACGGCGGAGCCACAGCCACAGCCTCTGTTAATCCGAATTTCTTACCGTCACCGCCGTCTAACGAATCTACCGGCTCGCCTCACCGGAAAATGGCCGATGGAAGTTCGAAATGA

mRNA sequence

ATGCCGCAACCTTCACTTCTTCCTCCTCTCCTTCTCTGCACCGCTATCCTCCTTCCAATCGTTGCGTCGCAGCAACAATCCCCTTCCAATGCCGGAAATAGTCAATCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCCGCCGTCTCGACGCTCTACGCCTTTCTTCGCTCGCGAATTTCTGTCAGCGCACAACAAAGTAAGGATGAACGTGACACATCCTCTGTTAAATTGGGACAGAAAATTGGCTCGATACGCCCGTCGCTGGGGAATGAAGCGCGTTGCCGATTGCAAAATGATCCATTCGTACGGTCCGTATGGTGAGAATCTGTTTTGGGGAGCACTTGATCACTGGACACCGACGGAAGCGGTGGAATCGTGGTCGAAGGAGAAGCAATTTTACAACCCACAAAATAACGCCTGCTCTGAGGGCGAAATGTGCGGCCATTACACCCAAATCATTTGGAAAGATTCAATCAAACTTGGATGCACTCGCGTCAAATGCCAAACTGGAGGCGTTTTGATGATTTGTGAGTACGATCCGCCTGGAAATTATGTGAATGAGAGCCCATTCGCCACCGCCAACGGCGGAGCCACAGCCACAGCCTCTGTTAATCCGAATTTCTTACCGTCACCGCCGTCTAACGAATCTACCGGCTCGCCTCACCGGAAAATGGCCGATGGAAGTTCGAAATGA

Coding sequence (CDS)

ATGCCGCAACCTTCACTTCTTCCTCCTCTCCTTCTCTGCACCGCTATCCTCCTTCCAATCGTTGCGTCGCAGCAACAATCCCCTTCCAATGCCGGAAATAGTCAATCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCCGCCGTCTCGACGCTCTACGCCTTTCTTCGCTCGCGAATTTCTGTCAGCGCACAACAAAGTAAGGATGAACGTGACACATCCTCTGTTAAATTGGGACAGAAAATTGGCTCGATACGCCCGTCGCTGGGGAATGAAGCGCGTTGCCGATTGCAAAATGATCCATTCGTACGGTCCGTATGGTGAGAATCTGTTTTGGGGAGCACTTGATCACTGGACACCGACGGAAGCGGTGGAATCGTGGTCGAAGGAGAAGCAATTTTACAACCCACAAAATAACGCCTGCTCTGAGGGCGAAATGTGCGGCCATTACACCCAAATCATTTGGAAAGATTCAATCAAACTTGGATGCACTCGCGTCAAATGCCAAACTGGAGGCGTTTTGATGATTTGTGAGTACGATCCGCCTGGAAATTATGTGAATGAGAGCCCATTCGCCACCGCCAACGGCGGAGCCACAGCCACAGCCTCTGTTAATCCGAATTTCTTACCGTCACCGCCGTCTAACGAATCTACCGGCTCGCCTCACCGGAAAATGGCCGATGGAAGTTCGAAATGA

Protein sequence

MPQPSLLPPLLLCTAILLPIVASQQQSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEYDPPGNYVNESPFATANGGATATASVNPNFLPSPPSNESTGSPHRKMADGSSK

Homology

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BLAST of Clc04G08940 vs. NCBI nr
Match: XP_038883614.1 (pathogenesis-related protein 1A [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.6e-99
Identity = 186/237 (78.48%), Postives = 200/237 (84.39%), Query Frame = 0


Query: 1   MPQPSLLPPLL---LCTAILLPIVASQQQSPSNAGNSQSP----PPPPPPPPPPPSRRST 60
           MP PS LP LL   L   +LLPIV S QQSPSNAGN+QS       PP PP P P RRS 
Sbjct: 1   MPPPSTLPSLLCISLLLLLLLPIVLSHQQSPSNAGNTQSTATANQSPPSPPTPLPPRRSA 60

Query: 61  PFFAREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWG 120
           PFFAREFL AHNKVRMNVTHPLLNWD+KLARYARRWGMKRVADCKMIHSYGPYGENLFWG
Sbjct: 61  PFFAREFLLAHNKVRMNVTHPLLNWDKKLARYARRWGMKRVADCKMIHSYGPYGENLFWG 120

Query: 121 ALDHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGV 180
           ALDHWTPTEAVESWS+EKQFY+ Q+NACS G+MCGHYTQIIW+DS+KLGCTRVKCQTGGV
Sbjct: 121 ALDHWTPTEAVESWSREKQFYDVQHNACSGGQMCGHYTQIIWRDSLKLGCTRVKCQTGGV 180

Query: 181 LMICEYDPPGNYVNESPFATANGGATATASVNPN---FLPSPPSNESTGSPHRKMAD 228
           LMICEYDPPGNYVNESPF T +GGA ATA+ NPN    +P+PPS  S GSPHRKMA+
Sbjct: 181 LMICEYDPPGNYVNESPFDTIHGGAAATATANPNAPGTVPTPPSKVSAGSPHRKMAE 237

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BLAST of Clc04G08940 vs. NCBI nr
Match: XP_008447321.1 (PREDICTED: pathogenesis-related protein 1A [Cucumis melo])

HSP 1 Score: 321.6 bits (823), Expect = 5.4e-84
Identity = 158/227 (69.60%), Postives = 183/227 (80.62%), Query Frame = 0


Query: 1   MPQPSLLPPLLLC-TAILLPIVASQQQSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFARE 60
           MP PS+   LLLC + +LLPI++SQ QS S+A ++++      P PP  SRRS  +FA E
Sbjct: 1   MPPPSIPLHLLLCISLLLLPILSSQHQSSSSARSNKT------PTPPTRSRRSKLYFAHE 60

Query: 61  FLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALDHWT 120
           FL AHNKVR+NVTHPLLNWD+KLARYARRWGMKR+ DC+M+HSYGPYGENLFWGALDHWT
Sbjct: 61  FLLAHNKVRLNVTHPLLNWDKKLARYARRWGMKRMNDCRMVHSYGPYGENLFWGALDHWT 120

Query: 121 PTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEY 180
           P EAVESWSKEKQFY+P++NACS G+MCGHYTQIIW+DS+KLGCTRVKCQTGGVLMICEY
Sbjct: 121 PKEAVESWSKEKQFYDPRHNACSAGQMCGHYTQIIWRDSLKLGCTRVKCQTGGVLMICEY 180

Query: 181 DPPGNYVNESPFATA-NGGATATASVNPNFLPSPPSNESTGSPHRKM 226
           DPPGNY+NESPF T  NGGA A  +  P  LP        GS HRK+
Sbjct: 181 DPPGNYLNESPFDTVNNGGAKAKTTAGPKNLP--------GSHHRKI 213

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BLAST of Clc04G08940 vs. NCBI nr
Match: KAE8649518.1 (hypothetical protein Csa_018149 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 2.4e-79
Identity = 146/201 (72.64%), Postives = 163/201 (81.09%), Query Frame = 0


Query: 26  QSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLARY 85
           QS SNAG +Q       P P   SR S  +FAREFL AHNKVR+NVTHPLLNWD+KLARY
Sbjct: 24  QSSSNAGRNQK------PTPSTRSRHSKLYFAREFLLAHNKVRLNVTHPLLNWDKKLARY 83

Query: 86  ARRWGMKRVADCKMIHSYGPYGENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGE 145
           ARRWGMKR+ DCKM+HSYGPYGENLFWGALDHWTP +AVESWSKEKQFY+ Q+NACS G+
Sbjct: 84  ARRWGMKRINDCKMVHSYGPYGENLFWGALDHWTPAQAVESWSKEKQFYDRQHNACSSGQ 143

Query: 146 MCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEYDPPGNYVNESPFATA-NGGATATASV 205
           MCGHYTQIIW+DS+KLGCTRVKCQ+GG+LMICEYDPPGNYVNESPF T  NGGATA  + 
Sbjct: 144 MCGHYTQIIWRDSLKLGCTRVKCQSGGILMICEYDPPGNYVNESPFDTVNNGGATAKTTG 203

Query: 206 NPNFLPSPPSNESTGSPHRKM 226
                    S +S GSPHRK+
Sbjct: 204 G--------SKKSAGSPHRKI 210

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BLAST of Clc04G08940 vs. NCBI nr
Match: KAA0047321.1 (pathogenesis-related protein 1A [Cucumis melo var. makuwa])

HSP 1 Score: 303.1 bits (775), Expect = 2.0e-78
Identity = 144/201 (71.64%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 26  QSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLARY 85
           QS S+A ++++      P PP  SRRS  +FA EFL AHNKVR+NVTHPLLNWD+KLARY
Sbjct: 71  QSSSSARSNKT------PTPPTRSRRSKLYFAHEFLLAHNKVRLNVTHPLLNWDKKLARY 130

Query: 86  ARRWGMKRVADCKMIHSYGPYGENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGE 145
           ARRWGMKR+ DC+M+HSYGPYGENLFWGALDHWTP EAVESWSKEKQFY+P++NACS G+
Sbjct: 131 ARRWGMKRMNDCRMVHSYGPYGENLFWGALDHWTPKEAVESWSKEKQFYDPRHNACSAGQ 190

Query: 146 MCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEYDPPGNYVNESPFATA-NGGATATASV 205
           MCGHYTQIIW+DS+KLGCTRVKCQTGGVLMICEYDPPGNY+NESPF T  NGGA A  + 
Sbjct: 191 MCGHYTQIIWRDSLKLGCTRVKCQTGGVLMICEYDPPGNYLNESPFDTVNNGGAKAKTTA 250

Query: 206 NPNFLPSPPSNESTGSPHRKM 226
            P  LP        GS HRK+
Sbjct: 251 GPKNLP--------GSHHRKI 257

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BLAST of Clc04G08940 vs. NCBI nr
Match: XP_023544681.1 (pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 3.3e-73
Identity = 155/286 (54.20%), Postives = 185/286 (64.69%), Query Frame = 0


Query: 1   MPQPSLLPPLLLCTAIL-LPIVASQQQSPSNAGN-----SQSPPPPPPPPP-------PP 60
           M  PS+LPPL LC  +L +PIV+ + +   ++G      +++P P     P       P 
Sbjct: 1   MSPPSVLPPLFLCIILLFIPIVSPETKISHSSGRNRPTATENPSPQNEQSPSDGATANPM 60

Query: 61  PSRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYG 120
           P + S P +AREFL+AHNKVRMNVTHP L+WDR LARYARRWG KR  DCKM+HSYGPYG
Sbjct: 61  PRKHSKPLYAREFLTAHNKVRMNVTHPALSWDRGLARYARRWGTKRTFDCKMVHSYGPYG 120

Query: 121 ENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVK 180
           ENLFWGALDHWTPT+AVESWSKE++ Y+ Q N+C EGEMCGHYTQ+IW+D+ KLGCTRV+
Sbjct: 121 ENLFWGALDHWTPTDAVESWSKERRHYDAQTNSCVEGEMCGHYTQVIWRDTTKLGCTRVR 180

Query: 181 CQTGGVLMICEYDPPGNYVNESPFATAN-------------------------------- 226
           CQTGGVL+ICEYDPPGNYVNESPF T N                                
Sbjct: 181 CQTGGVLIICEYDPPGNYVNESPFDTVNASATPPAATPTPTPTAAGTATAAAGTATAAAG 240

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BLAST of Clc04G08940 vs. ExPASy Swiss-Prot
Match: P09042 (Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 5.0e-40
Identity = 62/134 (46.27%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 58  REFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALDH 117
           +++L AHN  R +V    L WD ++A YA+ +  +  ADC ++HS+G YGENL WG+ D 
Sbjct: 35  QDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLAWGSGDF 94

Query: 118 WTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVLMIC 177
            T  +AVE W  EKQ+Y   +N C++G++CGHYTQ++W++S+++GC RV+C  GG ++ C
Sbjct: 95  LTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSC 154

Query: 178 EYDPPGNYVNESPF 192
            YDPPGN + +SP+
Sbjct: 155 NYDPPGNVIGKSPY 168

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BLAST of Clc04G08940 vs. ExPASy Swiss-Prot
Match: P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.5e-39
Identity = 76/187 (40.64%), Postives = 111/187 (59.36%), Query Frame = 0


Query: 5   SLLPPLLLCTAILLPIVASQQQSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFAREFLSAH 64
           S LP  LL + +LL +V S       A NSQ                      +++L AH
Sbjct: 7   SQLPSFLLVSTLLLFLVISHS---CRAQNSQ----------------------QDYLDAH 66

Query: 65  NKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALDHWTPTEAV 124
           N  R +V    L WD ++A YA+ +  +  ADC ++HS+G YGENL  G+ D  T  +AV
Sbjct: 67  NTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLAEGSGDFMTAAKAV 126

Query: 125 ESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEYDPPGN 184
           E W  EKQ+Y+  +N C++G++CGHYTQ++W++S+++GC RV+C  GG ++ C YDPPGN
Sbjct: 127 EMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSCNYDPPGN 168

Query: 185 YVNESPF 192
           Y  ESP+
Sbjct: 187 YRGESPY 168

[Close]

BLAST of Clc04G08940 vs. ExPASy Swiss-Prot
Match: P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 73/187 (39.04%), Postives = 111/187 (59.36%), Query Frame = 0


Query: 5   SLLPPLLLCTAILLPIVASQQQSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFAREFLSAH 64
           S +P   L + +LL ++ S     S+A NSQ                      +++L AH
Sbjct: 7   SQMPSFFLVSTLLLFLIISHS---SHAQNSQ----------------------QDYLDAH 66

Query: 65  NKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALDHWTPTEAV 124
           N  R +V    L WD  +A YA+ +  +  ADC ++HS+G YGENL  G+ D  T  +AV
Sbjct: 67  NTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHSHGQYGENLAQGSGDFMTAAKAV 126

Query: 125 ESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEYDPPGN 184
           E W  EKQ+Y+  +N C++G++CGHYTQ++W++S+++GC RVKC  GG ++ C YDPPGN
Sbjct: 127 EMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGN 168

Query: 185 YVNESPF 192
            + +SP+
Sbjct: 187 VIGQSPY 168

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BLAST of Clc04G08940 vs. ExPASy Swiss-Prot
Match: Q40374 (Pathogenesis-related protein PR-1 OS=Medicago truncatula OX=3880 GN=PR-1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-36
Identity = 67/137 (48.91%), Postives = 84/137 (61.31%), Query Frame = 0


Query: 56  FAREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGAL 115
           F  +FL   N  R  V    L WD KL  YA+ +  +R  DC + HS GPYGEN+FWG+ 
Sbjct: 37  FKNQFLIPQNIARAAVGLRPLVWDDKLTHYAQWYANQRRNDCALEHSNGPYGENIFWGSG 96

Query: 116 DHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTG-GVL 175
             W P +AV +W  EKQFYN  +N+C +GEMCGHYTQ++W  + K+GC  V C    G  
Sbjct: 97  VGWNPAQAVSAWVDEKQFYNYWHNSCVDGEMCGHYTQVVWGSTTKVGCASVVCSDDKGTF 156

Query: 176 MICEYDPPGNYVNESPF 192
           M C YDPPGNY  E P+
Sbjct: 157 MTCNYDPPGNYYGERPY 173

[Close]

BLAST of Clc04G08940 vs. ExPASy Swiss-Prot
Match: Q08697 (Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-34
Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 49  SRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGE 108
           S+  TP     FL+AHN  R  V    + WD  LA YA+ +  +R  DC MIHS GPYGE
Sbjct: 19  SQAQTP--RENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRADDCGMIHSDGPYGE 78

Query: 109 NLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKC 168
           NL   A        AV+ W  EKQ+Y+  +N C+ G++CGHYTQ++W+ S++LGC RV+C
Sbjct: 79  NLA-AAFPQLNAAGAVKMWDDEKQWYDYNSNTCAPGKVCGHYTQVVWRKSVRLGCARVRC 138

Query: 169 QTGGVLMICEYDPPGNYVN 188
            +G V + C YDPPGNY++
Sbjct: 139 NSGWVFITCNYDPPGNYID 154

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BLAST of Clc04G08940 vs. ExPASy TrEMBL
Match: A0A1S3BI14 (pathogenesis-related protein 1A OS=Cucumis melo OX=3656 GN=LOC103489793 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.6e-84
Identity = 158/227 (69.60%), Postives = 183/227 (80.62%), Query Frame = 0


Query: 1   MPQPSLLPPLLLC-TAILLPIVASQQQSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFARE 60
           MP PS+   LLLC + +LLPI++SQ QS S+A ++++      P PP  SRRS  +FA E
Sbjct: 1   MPPPSIPLHLLLCISLLLLPILSSQHQSSSSARSNKT------PTPPTRSRRSKLYFAHE 60

Query: 61  FLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALDHWT 120
           FL AHNKVR+NVTHPLLNWD+KLARYARRWGMKR+ DC+M+HSYGPYGENLFWGALDHWT
Sbjct: 61  FLLAHNKVRLNVTHPLLNWDKKLARYARRWGMKRMNDCRMVHSYGPYGENLFWGALDHWT 120

Query: 121 PTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEY 180
           P EAVESWSKEKQFY+P++NACS G+MCGHYTQIIW+DS+KLGCTRVKCQTGGVLMICEY
Sbjct: 121 PKEAVESWSKEKQFYDPRHNACSAGQMCGHYTQIIWRDSLKLGCTRVKCQTGGVLMICEY 180

Query: 181 DPPGNYVNESPFATA-NGGATATASVNPNFLPSPPSNESTGSPHRKM 226
           DPPGNY+NESPF T  NGGA A  +  P  LP        GS HRK+
Sbjct: 181 DPPGNYLNESPFDTVNNGGAKAKTTAGPKNLP--------GSHHRKI 213

[Close]

BLAST of Clc04G08940 vs. ExPASy TrEMBL
Match: A0A0A0L0R9 (SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G293120 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.2e-83
Identity = 158/227 (69.60%), Postives = 180/227 (79.30%), Query Frame = 0


Query: 1   MPQPSLLPPLLLC-TAILLPIVASQQQSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFARE 60
           MP  S    L+LC + +LLPI++SQ QS SNAG +Q       P P   SR S  +FARE
Sbjct: 1   MPPLSSPLHLILCISLLLLPILSSQDQSSSNAGRNQK------PTPSTRSRHSKLYFARE 60

Query: 61  FLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALDHWT 120
           FL AHNKVR+NVTHPLLNWD+KLARYARRWGMKR+ DCKM+HSYGPYGENLFWGALDHWT
Sbjct: 61  FLLAHNKVRLNVTHPLLNWDKKLARYARRWGMKRINDCKMVHSYGPYGENLFWGALDHWT 120

Query: 121 PTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEY 180
           P +AVESWSKEKQFY+ Q+NACS G+MCGHYTQIIW+DS+KLGCTRVKCQ+GG+LMICEY
Sbjct: 121 PAQAVESWSKEKQFYDRQHNACSSGQMCGHYTQIIWRDSLKLGCTRVKCQSGGILMICEY 180

Query: 181 DPPGNYVNESPFATA-NGGATATASVNPNFLPSPPSNESTGSPHRKM 226
           DPPGNYVNESPF T  NGGATA  +          S +S GSPHRK+
Sbjct: 181 DPPGNYVNESPFDTVNNGGATAKTTGG--------SKKSAGSPHRKI 213

[Close]

BLAST of Clc04G08940 vs. ExPASy TrEMBL
Match: A0A5A7U152 (Pathogenesis-related protein 1A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001400 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 9.7e-79
Identity = 144/201 (71.64%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 26  QSPSNAGNSQSPPPPPPPPPPPPSRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLARY 85
           QS S+A ++++      P PP  SRRS  +FA EFL AHNKVR+NVTHPLLNWD+KLARY
Sbjct: 71  QSSSSARSNKT------PTPPTRSRRSKLYFAHEFLLAHNKVRLNVTHPLLNWDKKLARY 130

Query: 86  ARRWGMKRVADCKMIHSYGPYGENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGE 145
           ARRWGMKR+ DC+M+HSYGPYGENLFWGALDHWTP EAVESWSKEKQFY+P++NACS G+
Sbjct: 131 ARRWGMKRMNDCRMVHSYGPYGENLFWGALDHWTPKEAVESWSKEKQFYDPRHNACSAGQ 190

Query: 146 MCGHYTQIIWKDSIKLGCTRVKCQTGGVLMICEYDPPGNYVNESPFATA-NGGATATASV 205
           MCGHYTQIIW+DS+KLGCTRVKCQTGGVLMICEYDPPGNY+NESPF T  NGGA A  + 
Sbjct: 191 MCGHYTQIIWRDSLKLGCTRVKCQTGGVLMICEYDPPGNYLNESPFDTVNNGGAKAKTTA 250

Query: 206 NPNFLPSPPSNESTGSPHRKM 226
            P  LP        GS HRK+
Sbjct: 251 GPKNLP--------GSHHRKI 257

[Close]

BLAST of Clc04G08940 vs. ExPASy TrEMBL
Match: A0A6J1GE47 (pathogenesis-related protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453125 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.6e-73
Identity = 151/286 (52.80%), Postives = 181/286 (63.29%), Query Frame = 0


Query: 1   MPQPSLLPPLLLCTAIL-LPIVASQQQSPSNAGN-----SQSPPPPPPPPP-------PP 60
           M  PS+LPPL LC  +L +PIV+ + +   ++G      +++P P     P       P 
Sbjct: 1   MSPPSVLPPLFLCIILLFIPIVSPETKISHSSGRNRPTATENPSPENQQSPSDGATENPM 60

Query: 61  PSRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYG 120
           P + S P +AREFL+AHNKVRMNVTHP+L+WDR LARYARRWG KR  DCKM+HSYGPYG
Sbjct: 61  PRKHSKPLYAREFLTAHNKVRMNVTHPVLSWDRGLARYARRWGTKRTVDCKMVHSYGPYG 120

Query: 121 ENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVK 180
           ENLFWGALDHWTPT+AVESWSKE++ Y+ Q N+C EGEMCGHYTQ+IW+D+ KLGCTRV+
Sbjct: 121 ENLFWGALDHWTPTDAVESWSKERRHYDAQTNSCVEGEMCGHYTQVIWRDTTKLGCTRVR 180

Query: 181 CQTGGVLMICEYDPPGNYVNESPFATAN------------------------GGATATAS 226
           CQ GGVL+ICEYDPPGNYVNE+PF T N                        G ATATA+
Sbjct: 181 CQIGGVLIICEYDPPGNYVNETPFDTVNATATPPAATPTPSPATPTPTPRPAGTATATAT 240

[Close]

BLAST of Clc04G08940 vs. ExPASy TrEMBL
Match: A0A6J1ISC1 (pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111477975 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 6.1e-73
Identity = 148/278 (53.24%), Postives = 177/278 (63.67%), Query Frame = 0


Query: 1   MPQPSLLPPLLLCTAIL-LPIVASQQQSPSNAGNSQSPPPPPPPPP------------PP 60
           M  PS LPPL LC  +L +PIV+ + +   ++G ++S     P P             P 
Sbjct: 1   MSPPSALPPLFLCIILLFIPIVSPETKISHSSGRNRSTATENPSPENQQSPSDGATANPM 60

Query: 61  PSRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYG 120
             + S P +AREFL+AHNKVRMNVTHP L+WDR LARYARRWG KR  DCKM+HSYGPYG
Sbjct: 61  LRKHSKPLYAREFLTAHNKVRMNVTHPALSWDRGLARYARRWGTKRTVDCKMVHSYGPYG 120

Query: 121 ENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVK 180
           ENLFWGALDHWTPT+AVESWSKE++ Y+ Q N+C EGEMCGHYTQ+IW+D+ KLGCTRV+
Sbjct: 121 ENLFWGALDHWTPTDAVESWSKERRHYDAQTNSCVEGEMCGHYTQVIWRDTTKLGCTRVR 180

Query: 181 CQTGGVLMICEYDPPGNYVNESPFATAN-------------------------------- 226
           CQ+GGVL+ICEYDPPGNYVNE+PF T N                                
Sbjct: 181 CQSGGVLIICEYDPPGNYVNETPFDTVNASATPPAATPTPTPRPGKPTAAAAAAAGTAGT 240

[Close]

BLAST of Clc04G08940 vs. TAIR 10
Match: AT1G01310.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 182.2 bits (461), Expect = 4.8e-46
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 57  AREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALD 116
           +REFL AHN VR  V  P   WD +LA YAR W  +RV DC+++HS GPYGEN+FW   +
Sbjct: 85  SREFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDCRLVHSNGPYGENIFWAGKN 144

Query: 117 HWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVLMI 176
           +W+P + V  W+ E +FY+ + N C    MCGHYTQI+W+DS K+GC  V C  GGV  I
Sbjct: 145 NWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRDSTKVGCASVDCSNGGVYAI 204

Query: 177 CEYDPPGNYVNESPFAT 194
           C Y+PPGNY  E+PF +
Sbjct: 205 CVYNPPGNYEGENPFGS 221

[Close]

BLAST of Clc04G08940 vs. TAIR 10
Match: AT3G09590.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 167.9 bits (424), Expect = 9.4e-42
Identity = 70/137 (51.09%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 57  AREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYGPYGENLFWGALD 116
           +REFL AHN  R++   P L WDR LAR+A +W  +R +DC MIHS GPYGEN+FW    
Sbjct: 50  SREFLQAHNDARVSSGVPTLGWDRDLARFADKWAKQRKSDCSMIHSGGPYGENIFWHRRK 109

Query: 117 H-WTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTG-GVL 176
             W+P + V  W +E+  Y+ + N C+ G+MCGHYTQ++W+++  +GC RVKC  G G L
Sbjct: 110 KTWSPEKVVTRWFEERFNYDVKTNTCAPGKMCGHYTQMVWRETTAVGCARVKCHNGRGYL 169

Query: 177 MICEYDPPGNYVNESPF 192
           ++CEYDP GNY  E PF
Sbjct: 170 VVCEYDPRGNYEGERPF 186

[Close]

BLAST of Clc04G08940 vs. TAIR 10
Match: AT4G25790.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-40
Identity = 82/169 (48.52%), Postives = 101/169 (59.76%), Query Frame = 0


Query: 28  PSNAGNSQSPPPPPPPP----PPPPSRRSTPFFAREFLSAHNKVRMNVTHPLLNWDRKLA 87
           P      Q  P P P P    PPP  +  T  F ++FL  HN VR  +  P L WD K+A
Sbjct: 42  PPYVAKPQPLPTPSPKPILYQPPPTYQPPTGSFEQQFLDPHNTVRGGLGLPPLVWDVKIA 101

Query: 88  RYARRWGMKRVADCKMIHSYGPYGENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSE 147
            YA  W  +R  DC + HS GPYGENLFWG+   +T T AVESW+ E + YN   N C  
Sbjct: 102 SYATWWANQRRYDCSLTHSTGPYGENLFWGSGSDFTSTFAVESWTVEAKSYNHMTNTCEG 161

Query: 148 GEMCGHYTQIIWKDSIKLGCTRVKCQTG-GVLMICEYDPPGNYVNESPF 192
             MCGHYTQI+W+++ +LGC RV C+ G GV + C YDPPGNYV E P+
Sbjct: 162 DGMCGHYTQIVWRETRRLGCARVVCENGAGVFITCNYDPPGNYVGEKPY 210

[Close]

BLAST of Clc04G08940 vs. TAIR 10
Match: AT5G57625.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-40
Identity = 80/158 (50.63%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 37  PPPPPPPPPPPPSRRSTP--FFAREFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRV 96
           P P P P   PP+  S P    AR FL  HN +R  +  P L WD KLA YA  W  +R 
Sbjct: 50  PSPSPKPVYRPPTTPSLPAGSIARLFLDPHNALRSGLGLPPLIWDGKLASYATWWANQRR 109

Query: 97  ADCKMIHSYGPYGENLFWGALDHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQII 156
            DC + HS GPYGENLFWG+   W P  AV+SW  E + YN   N+C    MCGHYTQ++
Sbjct: 110 YDCSLTHSTGPYGENLFWGSGSSWAPGFAVQSWIVEGRSYNHNTNSCDGSGMCGHYTQMV 169

Query: 157 WKDSIKLGCTRVKCQTG-GVLMICEYDPPGNYVNESPF 192
           W+D+ +LGC RV C+ G GV + C YDPPGNYV E P+
Sbjct: 170 WRDTKRLGCARVVCENGAGVFITCNYDPPGNYVGEKPY 207

[Close]

BLAST of Clc04G08940 vs. TAIR 10
Match: AT4G25780.1 (CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein )

HSP 1 Score: 158.7 bits (400), Expect = 5.7e-39
Identity = 64/137 (46.72%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 59  EFLSAHNKVRMNVTHPLLNWDRKLARYARRWGMKRVADCKMIHSYG----PYGENLFWGA 118
           +FL  HN VR     P L WDR+L  YA+ W  +R  DC + HS        GEN++WG 
Sbjct: 54  QFLFRHNLVRAARFEPPLIWDRRLQNYAQGWANQRRGDCALRHSVSNGEFNLGENIYWGY 113

Query: 119 LDHWTPTEAVESWSKEKQFYNPQNNACSEGEMCGHYTQIIWKDSIKLGCTRVKCQTGGVL 178
             +W+P +AV +W+ EK+FY+  +N C  G+MCGHYTQI+WK + ++GC RV C  GG+ 
Sbjct: 114 GANWSPADAVVAWASEKRFYHYGSNTCDAGQMCGHYTQIVWKSTRRVGCARVVCDNGGIF 173

Query: 179 MICEYDPPGNYVNESPF 192
           M C YDPPGNY+ + P+
Sbjct: 174 MTCNYDPPGNYIGQKPY 190

The following BLAST results are available for this feature:

BLAST of Clc04G08940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883614.1	1.6e-99	78.48	pathogenesis-related protein 1A [Benincasa hispida]	[more]
XP_008447321.1	5.4e-84	69.60	PREDICTED: pathogenesis-related protein 1A [Cucumis melo]	[more]
KAE8649518.1	2.4e-79	72.64	hypothetical protein Csa_018149 [Cucumis sativus]	[more]
KAA0047321.1	2.0e-78	71.64	pathogenesis-related protein 1A [Cucumis melo var. makuwa]	[more]
XP_023544681.1	3.3e-73	54.20	pathogenesis-related protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc04G08940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09042	5.0e-40	46.27	Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3	[more]
P08299	5.5e-39	40.64	Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1	[more]
P07053	2.1e-38	39.04	Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
Q40374	1.5e-36	48.91	Pathogenesis-related protein PR-1 OS=Medicago truncatula OX=3880 GN=PR-1 PE=2 SV...	[more]
Q08697	1.8e-34	46.76	Pathogenesis-related protein 1A1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]

BLAST of Clc04G08940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BI14	2.6e-84	69.60	pathogenesis-related protein 1A OS=Cucumis melo OX=3656 GN=LOC103489793 PE=4 SV=...	[more]
A0A0A0L0R9	2.2e-83	69.60	SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G293120 PE=4 SV...	[more]
A0A5A7U152	9.7e-79	71.64	Pathogenesis-related protein 1A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A6J1GE47	3.6e-73	52.80	pathogenesis-related protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145312...	[more]
A0A6J1ISC1	6.1e-73	53.24	pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111477975 ...	[more]

BLAST of Clc04G08940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01310.1	4.8e-46	52.55	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro...	[more]
AT3G09590.1	9.4e-42	51.09	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro...	[more]
AT4G25790.1	1.0e-40	48.52	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro...	[more]
AT5G57625.1	1.4e-40	50.63	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro...	[more]
AT4G25780.1	5.7e-39	46.72	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 pro...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001283	Cysteine-rich secretory protein-related	PRINTS	PR00837	V5TPXLIKE	coord: 174..187 score: 45.94 coord: 123..136 score: 37.74 coord: 147..163 score: 53.5 coord: 76..94 score: 29.47
IPR001283	Cysteine-rich secretory protein-related	PANTHER	PTHR10334	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	coord: 40..191
IPR014044	CAP domain	SMART	SM00198	SCP_3	coord: 55..187 e-value: 3.8E-44 score: 162.7
IPR014044	CAP domain	PFAM	PF00188	CAP	coord: 61..179 e-value: 6.5E-17 score: 62.5
IPR035940	CAP superfamily	GENE3D	3.40.33.10	CAP	coord: 51..195 e-value: 8.7E-41 score: 141.6
IPR035940	CAP superfamily	SUPERFAMILY	55797	PR-1-like	coord: 51..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..231
None	No IPR available	PANTHER	PTHR10334:SF429	OS05G0595200 PROTEIN	coord: 40..191
None	No IPR available	CDD	cd05381	CAP_PR-1	coord: 57..191 e-value: 7.4006E-74 score: 218.657
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01009	CRISP_1	coord: 148..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G08940.1	Clc04G08940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005576	extracellular region