Clc04G07320 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G07320
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein trichome birefringence-like 3
Location	ClcChr04: 21025013 .. 21025568 (-)
RNA-Seq Expression	Clc04G07320
Synteny	Clc04G07320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTGTTGGCACCGTCTCCCTCTCCGTTGATGGCGAAACCCTCGATCGCCCGACTCAAGCCTCACCTCCCCTTTCTCACCGTCGTCTTTTGTGCCTTCGCCTTCCTTGCTCTCTTCTACACCGAGCGGATCACTTTCTTCTCCTCCACCTCCATTTTTAAACTCAAGTCGTGCCCTCGAAAATCCATTCCATCCAAAATAAGTATGTTTTTTCAAAATATTGTTGGAATATATGGTATGTGACTCTTCATTTAGGGTTACATTCTTTTAAGCAAGCCAAGAGTCACATGTCAACCAATTTTATATTTCAACTTTCATACATATCTCAATTTTAAAATTCAAGCGGTAGAAACATGGGTGTAGTTGAACTACCAATCAAATATTTTTGTTCTTGCAATTGTCTTCTTCCTTCCGTCTTCACTTTGCGTCTGACCACTTTACCTGCAGGGGAGAAGCGAGTGGAGGAGGAGCAGTGGAGAGACCCGTTGACGGACGACCGGTTCGAGTTCGACCCGGAGGAGTGCAGCGTAGTGAAGGGGAAGTGGGTGTTTAA

mRNA sequence

ATGAGCTTGTTGGCACCGTCTCCCTCTCCGTTGATGGCGAAACCCTCGATCGCCCGACTCAAGCCTCACCTCCCCTTTCTCACCGTCGTCTTTTGTGCCTTCGCCTTCCTTGCTCTCTTCTACACCGAGCGGATCACTTTCTTCTCCTCCACCTCCATTTTTAAACTCAAGGGAGAAGCGAGTGGAGGAGGAGCAGTGGAGAGACCCGTTGACGGACGACCGGTTCGAGTTCGACCCGGAGGAGTGCAGCGTAGTGAAGGGGAAGTGGGTGTTTAA

Coding sequence (CDS)

ATGAGCTTGTTGGCACCGTCTCCCTCTCCGTTGATGGCGAAACCCTCGATCGCCCGACTCAAGCCTCACCTCCCCTTTCTCACCGTCGTCTTTTGTGCCTTCGCCTTCCTTGCTCTCTTCTACACCGAGCGGATCACTTTCTTCTCCTCCACCTCCATTTTTAAACTCAAGGGAGAAGCGAGTGGAGGAGGAGCAGTGGAGAGACCCGTTGACGGACGACCGGTTCGAGTTCGACCCGGAGGAGTGCAGCGTAGTGAAGGGGAAGTGGGTGTTTAA

Protein sequence

MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLKGEASGGGAVERPVDGRPVRVRPGGVQRSEGEVGV

Homology

[Close]

BLAST of Clc04G07320 vs. NCBI nr
Match: XP_008464204.1 (PREDICTED: protein trichome birefringence-like 3 [Cucumis melo] >KAA0059079.1 protein trichome birefringence-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of Clc04G07320 vs. NCBI nr
Match: TYK29246.1 (protein trichome birefringence-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of Clc04G07320 vs. NCBI nr
Match: XP_004148615.1 (protein trichome birefringence-like 3 [Cucumis sativus] >KAE8649563.1 hypothetical protein Csa_018025 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MSLLAPSPSPLMAK-PSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSLLA SPS LMAK PS+ARLKPHLPFLTVV CAFAFLALFYTERITFFSS SIFKLK
Sbjct: 4  MSLLASSPSGLMAKPPSVARLKPHLPFLTVVLCAFAFLALFYTERITFFSSASIFKLK 61

[Close]

BLAST of Clc04G07320 vs. NCBI nr
Match: XP_038883159.1 (protein trichome birefringence-like 3 [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSL APSPS LMAKPS+ARLKPHLPFL V+ CAFAFL LF+TE ITFFSS SI KLK
Sbjct: 1  MSLWAPSPSALMAKPSVARLKPHLPFLIVILCAFAFLVLFHTEGITFFSSISISKLK 57

[Close]

BLAST of Clc04G07320 vs. NCBI nr
Match: XP_022978176.1 (protein trichome birefringence-like 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MSLLAPSPSPLM-AKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSL A SPS LM +K  I RLKP LPFLTVV CAF+FLALFYTERITFFSS SIFKLK
Sbjct: 1  MSLSASSPSALMTSKCPITRLKPRLPFLTVVLCAFSFLALFYTERITFFSSISIFKLK 58

[Close]

BLAST of Clc04G07320 vs. ExPASy TrEMBL
Match: A0A5A7UZW7 (Protein trichome birefringence-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold612G00030 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.1e-17
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of Clc04G07320 vs. ExPASy TrEMBL
Match: A0A5D3E013 (Protein trichome birefringence-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00070 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.1e-17
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of Clc04G07320 vs. ExPASy TrEMBL
Match: A0A1S3CLE2 (protein trichome birefringence-like 3 OS=Cucumis melo OX=3656 GN=LOC103502139 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.1e-17
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MSLLAPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSLLA SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFKLK
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of Clc04G07320 vs. ExPASy TrEMBL
Match: A0A0A0KXK5 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G310710 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.0e-16
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MSLLAPSPSPLMAK-PSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSLLA SPS LMAK PS+ARLKPHLPFLTVV CAFAFLALFYTERITFFSS SIFKLK
Sbjct: 1  MSLLASSPSGLMAKPPSVARLKPHLPFLTVVLCAFAFLALFYTERITFFSSASIFKLK 58

[Close]

BLAST of Clc04G07320 vs. ExPASy TrEMBL
Match: A0A6J1IM07 (protein trichome birefringence-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478238 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MSLLAPSPSPLM-AKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKLK 58
          MSL A SPS LM +K  I RLKP LPFLTVV CAF+FLALFYTERITFFSS SIFKLK
Sbjct: 1  MSLSASSPSALMTSKCPITRLKPRLPFLTVVLCAFSFLALFYTERITFFSSISIFKLK 58

The following BLAST results are available for this feature:

BLAST of Clc04G07320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464204.1	1.5e-16	89.47	PREDICTED: protein trichome birefringence-like 3 [Cucumis melo] >KAA0059079.1 pr...	[more]
TYK29246.1	1.5e-16	89.47	protein trichome birefringence-like 3 [Cucumis melo var. makuwa]	[more]
XP_004148615.1	1.2e-15	89.66	protein trichome birefringence-like 3 [Cucumis sativus] >KAE8649563.1 hypothetic...	[more]
XP_038883159.1	1.2e-13	80.70	protein trichome birefringence-like 3 [Benincasa hispida]	[more]
XP_022978176.1	3.2e-11	79.31	protein trichome birefringence-like 3 isoform X1 [Cucurbita maxima]	[more]

BLAST of Clc04G07320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G07320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZW7	7.1e-17	89.47	Protein trichome birefringence-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3E013	7.1e-17	89.47	Protein trichome birefringence-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CLE2	7.1e-17	89.47	protein trichome birefringence-like 3 OS=Cucumis melo OX=3656 GN=LOC103502139 PE...	[more]
A0A0A0KXK5	6.0e-16	89.66	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G310710...	[more]
A0A6J1IM07	1.5e-11	79.31	protein trichome birefringence-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Clc04G07320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G07320.2	Clc04G07320.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0045489	pectin biosynthetic process
biological_process	GO:0009827	plant-type cell wall modification
biological_process	GO:0045492	xylan biosynthetic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:1990538	xylan O-acetyltransferase activity