Clc04G05695 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G05695
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionspermidine hydroxycinnamoyl transferase-like
LocationClcChr04: 18395440 .. 18395649 (+)
RNA-Seq ExpressionClc04G05695
SyntenyClc04G05695
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGTGTCTTGGATGTCAATGCCAATATGTATGATGCAGATTTTGGGTGGGGACGACCAGATTATGTTGGAGCGGCAGTATTAGGTTCTGATGGGAAGGCGTACGTCATGCCAGGGCCGACCAACCATGGTTCACTCATTGTAGCGATGCAGTTGCAGGCGAAGCATATGGAGGGTTTCACGAAGTTCTTCTATGAAGATCTTTGA

mRNA sequence

ATGTATAGTGTCTTGGATGTCAATGCCAATATGTATGATGCAGATTTTGGGTGGGGACGACCAGATTATGTTGGAGCGGCAGTATTAGGTTCTGATGGGAAGGCGTACGTCATGCCAGGGCCGACCAACCATGGTTCACTCATTGTAGCGATGCAGTTGCAGGCGAAGCATATGGAGGGTTTCACGAAGTTCTTCTATGAAGATCTTTGA

Coding sequence (CDS)

ATGTATAGTGTCTTGGATGTCAATGCCAATATGTATGATGCAGATTTTGGGTGGGGACGACCAGATTATGTTGGAGCGGCAGTATTAGGTTCTGATGGGAAGGCGTACGTCATGCCAGGGCCGACCAACCATGGTTCACTCATTGTAGCGATGCAGTTGCAGGCGAAGCATATGGAGGGTTTCACGAAGTTCTTCTATGAAGATCTTTGA

Protein sequence

MYSVLDVNANMYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL
Homology
BLAST of Clc04G05695 vs. NCBI nr
Match: XP_022156247.1 (spermidine hydroxycinnamoyl transferase-like [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-17
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL 70
           +YDADFGWGRP YVG A++ SDGKAY+M GPTN GS+I+A++LQ KHM+ F KFFYEDL
Sbjct: 410 LYDADFGWGRPSYVGPAMVNSDGKAYIMSGPTNDGSVIIAIRLQTKHMDDFKKFFYEDL 468

BLAST of Clc04G05695 vs. NCBI nr
Match: KGN53927.1 (hypothetical protein Csa_019170 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.2e-16
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL 70
           +YDADFGWG PDYVG  +L  DG+ ++MPGP N GS+IVA+QL  KHME F KFFYEDL
Sbjct: 395 IYDADFGWGHPDYVGPLMLDCDGETFIMPGPNNDGSIIVAIQLHMKHMEDFKKFFYEDL 453

BLAST of Clc04G05695 vs. NCBI nr
Match: XP_031739985.1 (spermidine hydroxycinnamoyl transferase [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.2e-16
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL 70
           +YDADFGWG PDYVG  +L  DG+ ++MPGP N GS+IVA+QL  KHME F KFFYEDL
Sbjct: 169 IYDADFGWGHPDYVGPLMLDCDGETFIMPGPNNDGSIIVAIQLHMKHMEDFKKFFYEDL 227

BLAST of Clc04G05695 vs. NCBI nr
Match: XP_004149125.1 (spermidine hydroxycinnamoyl transferase [Cucumis sativus] >KGN53930.1 hypothetical protein Csa_019157 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.2e-16
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL 70
           +YDADFGWG PDYVG ++L  DGK ++MPGP N G +IVA+QLQ KHME F KFFYEDL
Sbjct: 411 IYDADFGWGYPDYVGPSMLAYDGKMFIMPGPNNDGLIIVAIQLQMKHMEYFKKFFYEDL 469

BLAST of Clc04G05695 vs. NCBI nr
Match: XP_022966304.1 (spermidine hydroxycinnamoyl transferase-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 7   VNANMYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFY 66
           ++   Y+ADFGWGRP Y G A L  DGK+Y+M GP++ GSLIVA++LQA+HM+GF K+FY
Sbjct: 398 ISLPFYEADFGWGRPSYFGPATLNIDGKSYIMVGPSDDGSLIVAIRLQARHMDGFKKYFY 457

Query: 67  EDL 70
           ED+
Sbjct: 458 EDI 460

BLAST of Clc04G05695 vs. ExPASy Swiss-Prot
Match: Q9FI78 (Shikimate O-hydroxycinnamoyltransferase OS=Arabidopsis thaliana OX=3702 GN=HST PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 7   VNANMYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFY 66
           V   +YDADFGWGRP ++G   +  +G ++V+P PTN GSL VA+ LQ++HM+ F KF +
Sbjct: 372 VRLPIYDADFGWGRPIFMGPGGIPYEGLSFVLPSPTNDGSLSVAIALQSEHMKLFEKFLF 431

Query: 67  E 68
           E
Sbjct: 432 E 432

BLAST of Clc04G05695 vs. ExPASy Swiss-Prot
Match: Q8GSM7 (Shikimate O-hydroxycinnamoyltransferase OS=Nicotiana tabacum OX=4097 GN=HST PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-11
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYE 68
           ++DADFGWGRP ++G   +  +G ++++P PTN GS  VA+ LQA+HM+ F KF Y+
Sbjct: 378 IHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSQSVAISLQAEHMKLFEKFLYD 434

BLAST of Clc04G05695 vs. ExPASy Swiss-Prot
Match: G0LD36 (Rosmarinate synthase OS=Melissa officinalis OX=39338 GN=RAS PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-11
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 7   VNANMYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFY 66
           V   +Y+ DFGWG+  Y+G      +GK+Y++P P N GSL VA+ L  +HME F K FY
Sbjct: 366 VRLPVYEPDFGWGKAVYMGPWAAPFEGKSYLLPNPDNDGSLFVAITLHTQHMERFEKLFY 425

Query: 67  E 68
           E
Sbjct: 426 E 426

BLAST of Clc04G05695 vs. ExPASy Swiss-Prot
Match: Q0JBZ8 (Hydroxycinnamoyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=HCT1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-10
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 7   VNANMYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFY 66
           V   ++DADFGWGRP ++G   +  +G A+V+P     GSL +A+ LQA+HME F K  +
Sbjct: 381 VRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANKDGSLSIAISLQAEHMEKFRKLIF 440

Query: 67  E 68
           E
Sbjct: 441 E 441

BLAST of Clc04G05695 vs. ExPASy Swiss-Prot
Match: Q6K638 (Hydroxycinnamoyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=HCT2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-10
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 7   VNANMYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFY 66
           V   ++DADFGWGRP ++G   +  +G A+V+P  +  GSL VA+ LQA+HME F K  +
Sbjct: 381 VRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASGDGSLSVAISLQAEHMEKFRKMIF 440

Query: 67  E 68
           +
Sbjct: 441 D 441

BLAST of Clc04G05695 vs. ExPASy TrEMBL
Match: A0A6J1DRJ9 (spermidine hydroxycinnamoyl transferase-like OS=Momordica charantia OX=3673 GN=LOC111023179 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-18
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL 70
           +YDADFGWGRP YVG A++ SDGKAY+M GPTN GS+I+A++LQ KHM+ F KFFYEDL
Sbjct: 410 LYDADFGWGRPSYVGPAMVNSDGKAYIMSGPTNDGSVIIAIRLQTKHMDDFKKFFYEDL 468

BLAST of Clc04G05695 vs. ExPASy TrEMBL
Match: A0A0A0KZY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G189010 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL 70
           +YDADFGWG PDYVG  +L  DG+ ++MPGP N GS+IVA+QL  KHME F KFFYEDL
Sbjct: 395 IYDADFGWGHPDYVGPLMLDCDGETFIMPGPNNDGSIIVAIQLHMKHMEDFKKFFYEDL 453

BLAST of Clc04G05695 vs. ExPASy TrEMBL
Match: A0A0A0KWD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G190020 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL 70
           +YDADFGWG PDYVG ++L  DGK ++MPGP N G +IVA+QLQ KHME F KFFYEDL
Sbjct: 411 IYDADFGWGYPDYVGPSMLAYDGKMFIMPGPNNDGLIIVAIQLQMKHMEYFKKFFYEDL 469

BLAST of Clc04G05695 vs. ExPASy TrEMBL
Match: A0A0A0KYM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G190010 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 11  MYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFYEDL 70
           +YDADFGWG PDYVG ++L  DGK ++MPGP N G +IVA+QLQ KHME F KFFYEDL
Sbjct: 73  IYDADFGWGYPDYVGPSMLAYDGKMFIMPGPNNDGLIIVAIQLQMKHMEYFKKFFYEDL 131

BLAST of Clc04G05695 vs. ExPASy TrEMBL
Match: A0A6J1HNZ2 (spermidine hydroxycinnamoyl transferase-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466005 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.8e-16
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 7   VNANMYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFY 66
           ++   Y+ADFGWGRP Y G A L  DGK+Y+M GP++ GSLIVA++LQA+HM+GF K+FY
Sbjct: 397 ISLPFYEADFGWGRPSYFGPATLNIDGKSYIMVGPSDDGSLIVAIRLQARHMDGFKKYFY 456

Query: 67  EDL 70
           ED+
Sbjct: 457 EDI 459

BLAST of Clc04G05695 vs. TAIR 10
Match: AT5G48930.1 (hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase )

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-13
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 7   VNANMYDADFGWGRPDYVGAAVLGSDGKAYVMPGPTNHGSLIVAMQLQAKHMEGFTKFFY 66
           V   +YDADFGWGRP ++G   +  +G ++V+P PTN GSL VA+ LQ++HM+ F KF +
Sbjct: 372 VRLPIYDADFGWGRPIFMGPGGIPYEGLSFVLPSPTNDGSLSVAIALQSEHMKLFEKFLF 431

Query: 67  E 68
           E
Sbjct: 432 E 432

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156247.11.0e-1771.19spermidine hydroxycinnamoyl transferase-like [Momordica charantia][more]
KGN53927.14.2e-1667.80hypothetical protein Csa_019170 [Cucumis sativus][more]
XP_031739985.14.2e-1667.80spermidine hydroxycinnamoyl transferase [Cucumis sativus][more]
XP_004149125.14.2e-1669.49spermidine hydroxycinnamoyl transferase [Cucumis sativus] >KGN53930.1 hypothetic... [more]
XP_022966304.11.6e-1560.32spermidine hydroxycinnamoyl transferase-like isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9FI785.0e-1250.82Shikimate O-hydroxycinnamoyltransferase OS=Arabidopsis thaliana OX=3702 GN=HST P... [more]
Q8GSM73.3e-1149.12Shikimate O-hydroxycinnamoyltransferase OS=Nicotiana tabacum OX=4097 GN=HST PE=1... [more]
G0LD369.5e-1147.54Rosmarinate synthase OS=Melissa officinalis OX=39338 GN=RAS PE=1 SV=1[more]
Q0JBZ83.6e-1045.90Hydroxycinnamoyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=HCT1 P... [more]
Q6K6384.7e-1045.90Hydroxycinnamoyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=HCT2 P... [more]
Match NameE-valueIdentityDescription
A0A6J1DRJ94.9e-1871.19spermidine hydroxycinnamoyl transferase-like OS=Momordica charantia OX=3673 GN=L... [more]
A0A0A0KZY32.0e-1667.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G189010 PE=3 SV=1[more]
A0A0A0KWD62.0e-1669.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G190020 PE=3 SV=1[more]
A0A0A0KYM32.0e-1669.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G190010 PE=3 SV=1[more]
A0A6J1HNZ27.8e-1660.32spermidine hydroxycinnamoyl transferase-like isoform X2 OS=Cucurbita maxima OX=3... [more]
Match NameE-valueIdentityDescription
AT5G48930.13.6e-1350.82hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003480TransferasePFAMPF02458Transferasecoord: 9..67
e-value: 7.2E-11
score: 41.4
IPR023213Chloramphenicol acetyltransferase-like domain superfamilyGENE3D3.30.559.10coord: 7..69
e-value: 3.7E-16
score: 60.9
NoneNo IPR availablePANTHERPTHR31642:SF167SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASEcoord: 9..69
NoneNo IPR availablePANTHERPTHR31642TRICHOTHECENE 3-O-ACETYLTRANSFERASEcoord: 9..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G05695.1Clc04G05695.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups