Clc04G02880 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTAAGAGGAGGCTCAGTGCTGATGGACTCGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGATGGACATGAGAAGGTACTCGGGCAACCCGCCATATTCCTATGTGCACATAGAGGTTATATGCTAGTGCGTTGAGTTTTGCTTTGCATCAAGCCTTACTTATTTAACGTTAGGAGCGTTGAGTCTTGCTCCGCCTCAACTAAGGGAAAAGATTGAAAAACCAAACAGTTTTCTGTTTAAGCATTCTGGAAAACGATTCTATTGATTTGGAACGGATTTACAAGATTGACAAAGTTTTGTGGAAAATATGTTTATGTTGAATTATCGTGTTAAATCCTTGTTTTATATTTGCAAATGTAACATGCCTGTTTTCATATAAAGCTCGTTTACAAAAACTTTTCACTCACGGGGTTTTAGCTCACGTTTTCCTTTTTTTTTTTTAATTTTCCAGGTAGCGAGTGAGTTTGGGATACTTTGCCTACGCAATAACCTCGTCTGGGTCATCTTTGGTGAAAATGGTTGGACAGTGAGCCTTACAGAGGAGTCAAGGTTGCTGTCTTCACATCTCCTTTCGGGTTATGGAGGATAATCCGAGAAGGGGTGTGACACTTAAAGTATGATAAGATGAGACCCAATGTTGAAGGACATTGAGTAGGCATATTGATAAGCACTTGAAAAGTGCTTTCTATCCTTTCAAATTAAGGGAGTTTATATTAGATTTCACTTGTTTGCTAGTGGTTTTCAGGTTAAAATGAGGACAATTAGAAGAAAAGGCCAAAAGATCAAAACCGAGCAAGAATACGACGAAAAAGACACGAAAATCACAAAGTTGCCATAATTGAGGCAGCGCCGCGACGCTAAAATCAGAGAAGGTCTGCACAAGAATCTGCAACAGCGCTGCGGCACCGTCTGAAAAATTTCAATAGCACCGCGGCGCTATAGACCAGCGCTGTGGTGCCAGGTTACCATAAATGAAAAAATGTATTTTTGGAAAGATTTTTTGGGCAGAATACTCTATAAGTTTGGGGATTTCCAGCAGCCTTAAGAACAATTCAGAGCACAAAATTACAGACCTAAAAAGCCACAAGAAGAAGAGAATTAAGTGAGAGTTCATAGAAGAGTTCAAAGAGTGTGTTAGTTGCAAGGAAGAGGAAAAGAGTTCGAGATAGTCGTGGTGCCATTCGAATTCCGACGTGAGAGCCAAGGAGATCGTGACGGTGCTACCTCAATCAAGAGCCTCTTTTCAGTAGAGTTTCCCTTTCTTTACACTCTTTCTTTATTTATTTTGCTTAAACATGTTGCTTCAAGCTATGAGTGGCTAAACTCTTTAGTTTTAGGGTTTTGATGAATTGTTTGTGAATTTATGTTGATATTGTAGACTCTTATGGTTTTGTTGGAATGATTATGCTTTTCATTATTATTGTGTTTCATTCTTGTGGATTGGCCATCTTCACATGTTAGGTTAGATGTATGATTGAGAGATTGCATGTTTAACTTGATTTATAACAATGAATTGTTGTTAATCTATCACGAGAGTAGTTAGGTTGACAATAAAAGTTGCTAAAGACTATTCTTAATGCCATATAATTTGTATTGGTTTCAAGAGATTAGTAATCAATCGAGTTGCATGAGAAAGGGTTGTTTTTCAGAGAAAATAACTTGGAATTATGTTTCTAGACTTAGGCATATGATGACAATAAAATCCATGAAATCTATAGTATTGCATGATGAAATAAATAAGGATTCATTACCTAGAACTCTCTTTGATTCTTGTGTTTCTCACTTTATTACTTTCCTTATTTGGTTTTTATTTTCCATAACTCACAATATTAATTCCAATCCTCAAATAAAATTGATTCAAATCTAGAATAGCTAAGTAACTTAAACATTCACAATTGGATCTCTAGTTGAACGATTTTCGGACTTCATCGTCTTATATTATAACTTGACCCGTACAGTTGCGATTAACACTTAAAGTGCGCATCAAATTTTTGTTGCCATGCGGGGGATCCAAAGAACGGTTTTTGTTATTTAATATTCATTAGAATTGATAGATCTTAATTTGAGGTGTATATTACTTGGTTGATTATTTATATTATATTTTATTTTATTGTATTTTATATTTTTTTTTTCTTTTTTCTATTTTATTTTATTTCATTTTTATTTTTATTTTTTTTTGTCGGTTTATGCCTCAAGACAATACTAATATTCTCCCTCTTGATCCCGAGATTGAAAGGACGTGTAGAAGAAACCTAAGGGTTCAACACAATCACATCGAGGAGATGGCGGAGGAGATACCAAAGGCAATTCTAACGTAAAGATGAAAGGTGTTTCTAACGATGCAATTAAACTAAGACTTTTTCCTTTCTCTTTATAGGACCATGCAAAGGATTGGTTGGAAACCATACCTCCGGATAGCATCACAACGTGGGAGATCTTAGCTCAAGCTTTCATGAACAAATATTTTCCACCGACTAAATCTCAAAGACTAAGGATGGAGATTGGAACATTCCGCCACCTTGAGGATGAATAACTATATGAGGCTTAGTAGAGGTATAAGGATCTCTTGAGAAGATGCCCTCAACATGGTTACCCGGATTGTTTGCAAATTCAACTCTTCTACAATGGATTAGCAAGCTCAACCAAATCCATACTAGAATGCTCAAGAGGCGTATACCATACTAGAAGACTTGGCCACTACATCGTACAATTGGCCTTGTGAACGGTCTTCTCCAATCATTCCAAAAGCCATCGGAAGATATGAGATGGACGAGGTAAGTTCTCTAAAAGCTCAATTGGCTTCGCTCATTAATGCTTTATCTAAATTTTCTCAAGGAAGCCAAGTCCAAGCAAGTCCACCATCAATAGCTTCTCTTGCGGCCATGGCAAATCAACAAGAGCCAAGTGAGTTGGAGGTAGCCAATTATGTGGATAGAGGACAATACCGAGGTCAACAACAACTTTCAACTCGCTATCATCCCAACTTGAGGAATCATGAGAATTTTTCATATGCTAACAACAAGAATGTTTTGCAAGCACCTCAAGGATTCAATGGAGCGGGAAATGCAAAGACATCATTACTAGAGGACATAATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCAAGCTATTTCAAGCACTGTTCAAAAAGTAAGACAATTCAAAACTTGGAGGTTCAACTTAGTCAAATGACCACGTACCTCCAAACAATGCAAAAGGGTAAGTTCCCTAGTTGCCCTAAGAGAAACCCGAAGGAGGAATGCAAGGTCGTGACTTTGAGGAATGGAAAAAAGCTATCCACTCCTTTGATCAATGATGAAGATGATGAGCTTCCACAAGAAGAGGATGAAGCCATCATAGAGGATGTCCCACAAAAAAAGGGTGCATCTAAGGAAAAGGAGAAATCAAAGTCCAACATAGGGAGTAAGTAAGCCCCGTACTTGACCTTGTGAGAAGGCAAGTTAAGAAGAGACTAAGAGATGGGCGTTTAGTAGGAAAAGTTGGCCGAGTTGTGTGGGGGCAAAATTGTTAAGTATTGGCCATGCGTTGGTGGCACTATGCGTTGATGAAAGTAGTTTGGCGTGGACGCAGAGGTGAAGGAAGGCCATTAGGCGTTGAAGGCCACGAGATGTTGAAGGCCACGAGGCGTTGA ATGTTTAAGAGGAGGCTCAGTGCTGATGGACTCGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGATGGACATGAGAAGGTACTCGGGCAACCCGCCATATTCCTATGTGCACATAGAGGTAGCGAGTGAGTTTGGGATACTTTGCCTACGCAATAACCTCGTCTGGGTCATCTTTGGTGAAAATGGTTGGACAGTGAGCCTTACAGAGGAGTCAAGCGCCGCGACGCTAAAATCAGAGAAGAATGCTCAAGAGGCGTATACCATACTAGAAGACTTGGCCACTACATCGTACAATTGGCCTTGTGAACGGTCTTCTCCAATCATTCCAAAAGCCATCGGAAGATATGAGATGGACGAGGTAAGTTCTCTAAAAGCTCAATTGGCTTCGCTCATTAATGCTTTATCTAAATTTTCTCAAGGAAGCCAAGTCCAAGCAAGTCCACCATCAATAGCTTCTCTTGCGGCCATGGCAAATCAACAAGAGCCAAGTGAGTTGGAGGTAGCCAATTATGTGGATAGAGGACAATACCGAGGTCAACAACAACTTTCAACTCGCTATCATCCCAACTTGAGGAATCATGAGAATTTTTCATATGCTAACAACAAGAATGTTTTGCAAGCACCTCAAGGATTCAATGGAGCGGGAAATGCAAAGACATCATTACTAGAGGACATAATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCAAGCTATTTCAAGCACTGTTCAAAAATTGCCCTAAGAGAAACCCGAAGGAGGAATGCAAGGTCGTGACTTTGAGGAATGGAAAAAAGCTATCCACTCCTTTGATCAATGATGAAGATGATGAGCTTCCACAAGAAGAGGATGAAGCCATCATAGAGGATGTCCCACAAAAAAAGGGTGCATCTAAGGAAAAGGAGAAATCAAAGTCCAACATAGGGATATTGGCCATGCGTTGGTGGCACTATGCGTTGATGAAAGTAGTTTGGCGTGGACGCAGAGGTGAAGGAAGGCCATTAGGCGTTGAAGGCCACGAGATGTTGAAGGCCACGAGGCGTTGA ATGTTTAAGAGGAGGCTCAGTGCTGATGGACTCGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGATGGACATGAGAAGGTACTCGGGCAACCCGCCATATTCCTATGTGCACATAGAGGTAGCGAGTGAGTTTGGGATACTTTGCCTACGCAATAACCTCGTCTGGGTCATCTTTGGTGAAAATGGTTGGACAGTGAGCCTTACAGAGGAGTCAAGCGCCGCGACGCTAAAATCAGAGAAGAATGCTCAAGAGGCGTATACCATACTAGAAGACTTGGCCACTACATCGTACAATTGGCCTTGTGAACGGTCTTCTCCAATCATTCCAAAAGCCATCGGAAGATATGAGATGGACGAGGTAAGTTCTCTAAAAGCTCAATTGGCTTCGCTCATTAATGCTTTATCTAAATTTTCTCAAGGAAGCCAAGTCCAAGCAAGTCCACCATCAATAGCTTCTCTTGCGGCCATGGCAAATCAACAAGAGCCAAGTGAGTTGGAGGTAGCCAATTATGTGGATAGAGGACAATACCGAGGTCAACAACAACTTTCAACTCGCTATCATCCCAACTTGAGGAATCATGAGAATTTTTCATATGCTAACAACAAGAATGTTTTGCAAGCACCTCAAGGATTCAATGGAGCGGGAAATGCAAAGACATCATTACTAGAGGACATAATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCAAGCTATTTCAAGCACTGTTCAAAAATTGCCCTAAGAGAAACCCGAAGGAGGAATGCAAGGTCGTGACTTTGAGGAATGGAAAAAAGCTATCCACTCCTTTGATCAATGATGAAGATGATGAGCTTCCACAAGAAGAGGATGAAGCCATCATAGAGGATGTCCCACAAAAAAAGGGTGCATCTAAGGAAAAGGAGAAATCAAAGTCCAACATAGGGATATTGGCCATGCGTTGGTGGCACTATGCGTTGATGAAAGTAGTTTGGCGTGGACGCAGAGGTGAAGGAAGGCCATTAGGCGTTGAAGGCCACGAGATGTTGAAGGCCACGAGGCGTTGA MFKRRLSADGLEKAREFPQDPVLMDMRRYSGNPPYSYVHIEVASEFGILCLRNNLVWVIFGENGWTVSLTEESSAATLKSEKNAQEAYTILEDLATTSYNWPCERSSPIIPKAIGRYEMDEVSSLKAQLASLINALSKFSQGSQVQASPPSIASLAAMANQQEPSELEVANYVDRGQYRGQQQLSTRYHPNLRNHENFSYANNKNVLQAPQGFNGAGNAKTSLLEDIMLDFVKESRSRTTTLENSVKLFQALFKNCPKRNPKEECKVVTLRNGKKLSTPLINDEDDELPQEEDEAIIEDVPQKKGASKEKEKSKSNIGILAMRWWHYALMKVVWRGRRGEGRPLGVEGHEMLKATRR Homology
BLAST of Clc04G02880 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 289.7 bits (740), Expect = 3.5e-74 Identity = 170/263 (64.64%), Postives = 192/263 (73.00%), Query Frame = 0
BLAST of Clc04G02880 vs. NCBI nr
Match: XP_022893883.1 (uncharacterized protein LOC111408348 [Olea europaea var. sylvestris]) HSP 1 Score: 126.7 bits (317), Expect = 4.0e-25 Identity = 95/270 (35.19%), Postives = 138/270 (51.11%), Query Frame = 0
BLAST of Clc04G02880 vs. NCBI nr
Match: XP_024020480.1 (uncharacterized protein LOC112091333 [Morus notabilis]) HSP 1 Score: 122.9 bits (307), Expect = 5.7e-24 Identity = 85/261 (32.57%), Postives = 138/261 (52.87%), Query Frame = 0
BLAST of Clc04G02880 vs. NCBI nr
Match: XP_022883717.1 (uncharacterized protein LOC111400543 [Olea europaea var. sylvestris]) HSP 1 Score: 118.6 bits (296), Expect = 1.1e-22 Identity = 102/302 (33.77%), Postives = 145/302 (48.01%), Query Frame = 0
BLAST of Clc04G02880 vs. NCBI nr
Match: XP_022883666.1 (uncharacterized protein LOC111400483 [Olea europaea var. sylvestris]) HSP 1 Score: 118.2 bits (295), Expect = 1.4e-22 Identity = 90/271 (33.21%), Postives = 134/271 (49.45%), Query Frame = 0
BLAST of Clc04G02880 vs. ExPASy TrEMBL
Match: A0A6P9DWY0 (uncharacterized protein LOC118344026 OS=Juglans regia OX=51240 GN=LOC118344026 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 6.0e-19 Identity = 81/253 (32.02%), Postives = 126/253 (49.80%), Query Frame = 0
BLAST of Clc04G02880 vs. ExPASy TrEMBL
Match: A0A2P5B7D3 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_330330 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16 Identity = 65/175 (37.14%), Postives = 95/175 (54.29%), Query Frame = 0
BLAST of Clc04G02880 vs. ExPASy TrEMBL
Match: A0A2I4FP56 (uncharacterized protein LOC109000837 OS=Juglans regia OX=51240 GN=LOC109000837 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.4e-15 Identity = 73/249 (29.32%), Postives = 120/249 (48.19%), Query Frame = 0
BLAST of Clc04G02880 vs. ExPASy TrEMBL
Match: A0A2P5B1T0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_279370 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15 Identity = 71/220 (32.27%), Postives = 104/220 (47.27%), Query Frame = 0
BLAST of Clc04G02880 vs. ExPASy TrEMBL
Match: A0A2I4G4Q3 (uncharacterized protein LOC109004712 OS=Juglans regia OX=51240 GN=LOC109004712 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 6.9e-15 Identity = 75/258 (29.07%), Postives = 128/258 (49.61%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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