Clc04G02060 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G02060
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
LocationClcChr04: 6490712 .. 6496836 (-)
RNA-Seq ExpressionClc04G02060
SyntenyClc04G02060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAGATAAACAAGAAATTAGGGAAAACCTGATGGAGGGGGCTGTGACCATATCAAGTATCGGACCAAAAAGCGGTGGGTGCACCATTCCTAGGCTTGCAATGAATATTATGATAAATAAGGTCTTGTTTCAAAATAAACTTCCAAGGACTTTTGGAGGAAGCTGGTTGGAATCAACAACCTTCAAATCAAAGTGTTGGAGCCAGATTTGGCTGAGCTTCCTCCAAATGGCTCCATGTTGTATACCAAACTGCCATATCCATTTGGCCAAGAGAGCTCTATTCTGCTGCCTAATATCAACAATGCCCAAACCATCGTGTTCAATGGGCTGTTTTAGGATGTCTCATTTGAGAAGATGGTTCAAGTTGCTGTCCGTATTTCCAGGCTAGAGGAAGTTTCAAAAGAGCTTCTCAGTTCCACCACTTTGGTAGGAACGTGAAAGGACGTATAATATGTGGGCAGGTTGGACAAGATAGCATTCAAGAGGGTTAGTCTACCACCTTCTGAGAGGAGATTATGCTGCTAGGCTTATTACATTTTGACAACTTTGTCCAAAGATGGTTTGCCAAGGTTAAGGATGTAGGTTTACCGTAGAGAGGGAGACCCAAATAAGTAGCTGGACACAAAAGTAATCCACCCAAGCCTCATCACAATTGATGCCAAGAAATAAGAATTTCAGATTTGTGCCTATTGATATTAAGGCCGGAGGCAAGTTCAAAGGGAGCGATCAAGTTGAGGAGATCATCGATTTCTTCTTCCTTGTTGATGGAGAAAAGAATGGCGTCACTGGGAAATGAAAGGTGATTGATATTAAGGGAGCACATGTTGTCTTTGTACCCTCGAATAATGCCAAAATCAGCCGCCAAAGATTAAATTCTGCTTAGCGAGTCCATAACAATGATAAAGAGGAGGGGAGAAAGAGGATTACCTTGCTTTAATCCTCTAATCTTATTCCTTCATTGGCTTCCAAAACCTTTGATTCTCAATATTTTGTCAAGGAAGTCCTAATCAACTTTATAAAAAGTCTTTTTCAACGTCAAGCATGATGGCCACACTTTGGACTTTCTTTCTTTGCCACGCCTTGGCAATAAGGAAAGAGTAAAAAATTTTCCTACATTCAATAGTCACCTACTTTCATTGACATTAGAGTTGATACCTTTCTGAAAAAAATCTTGGAACACTCTAAGAAGATTGGGTTTGAGAATGTTTCATGACTTTTTAAGAATTCGGTGGTGAAACCATCTGGCCCCGGAGATTTGTTTGTATCCATTGCCTTGACTGCCAACCAAATTTCCTCCTTGGTGAAAGGAGCCTCAAGGTTGCTGCACTATATGCTAATGGGAGCCCAAACAATTGGTTGTGGAAGGAATCTGAAACTGAAAATTTTAGAGAAGAATTTCTTATAGAAGGAGATGAATTCAGTTTCAGTCATGATTTTGTATCAAACTAAAGTTATGTTCTGAAAGGACTTCAGTGATGCAATTCTTTCTCTTTTTGGAGTCAGCATATTTGTGGAAGAAAGAGGATTTTGTCCCCATTCCAATGCCAATTTGTCTGATCTCCATCGAATTTCCTTACTAGCATGAATGGAGAAGATTTTCTTTAATGAAAGATTTGCGATGATTAAGATCCTCATTAATGTTCCCAGTCTCTGCTCTTTGTCAATGAGGGATGACTCCTGCAATAAGGTAGATTTTCTGGATTCATCGTTCCCAAAGGTGGACAGGGTAGATTTAATTTAAAGAAGGTGATAATGAGTTGGCGTTAAATAATTTAAAGACTCAGTTGTAAGAGGTGGCAATCTCTAAAATTGTTGGTAGCACTAAAGAAAATAATGTTGAGTTGGCTTTAAGTGAATCAAAGTTTATCCTATGATGATAGCATTGATTCGGTATGCTTTAATGTTTATGTTTACTCTTTTTAAATGGTGCAGATCTGAAGGGTTCTGGAAAGGAAAATGGCTCAACTGTCTCATAGCTATTAACAGCTTACTAGTTTCTTAGGAAAAGGAGCAATAAATTGAATGGGTGTTAAAAAAGAGGTCGGGAGTGGTCCTTAACTTTTATCTTGGATAGCTCTATTATTTGTTTAAGTATTAAGAAATTCTTAGTCGAGGAGGAGATTTTGTTAGCAGCGGAAAGGATAAAGGAGGATTTTCTACCTAATGAGAGCTTTGTATTTTTTGTTTTGTTTAAAATGGAAAATCTGGAAGAGGGAAACCTTTGAAATTTTTTATGTGGAAGAGATTGCTGTTACTGAGTTGGGGAGAACTGCGTAGGGTTTGGGCTCCAACATCGAACATCTTCTTCTTGATTGAAACTCGAACTCTCCATTCAAAGATTAGAGATTTGTGAAATCTATTGTTTCACCGAACATATCTTCTTGATCTAAACTCAAACTCCCCATTCAACATCATCACGAGTAAGACTAGGAAAAGAAATACCAACATCCCAAATGTTCTCTTTCAAATTTGGTTTCACTCCTTGAAGAGAATTTTGGGCAATATATGGTTGATTTTCTAAAATTGACACATCCATACTCACAAAAACAATATTTATTTTTGTTTATTTTGTTTTGTTTAGGGGATCGAAACACATTTATAACCTTTTTACTTCAAGAGTAACCCAAGAAAATGCATTTAATAGCCCTATGGTCAAGTTTTGAATCGATAGTAACTGGGTATGTGAACATAAGGAGTACCCTAAAAACTTTGAGAGGTAAATTCAAAAGCCACTTAGCCAATAGGACTTTGTCATGAGTCCTTAAATTCCCATTTTGATTTCTTGGTTATCATGGAAACTTCTAAATATATTATTGTTTAAAAAATGGACTGTTTACGTTCAGGTAGGACTACAAGATTTCTTGTCCATGCCCTGATGCATTGTAACAATATTTAGTTCTAATACACACACCCTTTTGGATTACAACACCACACATGCTATTTTGTGCGGTCATATATAAATATATAAAGTTTTATCTATAGCCAAGCTTAGCATTAAATAAGATACTAAAATACAAAATATTTTGCATCCCACGTTTTAAGCTGAAGTAAATTTGAACGGAAGAGTGGTTCTCCTACTGAAAAATTACGCAATAAAAAAACTGATAGGCCTCTGTTGTTAATGCTCTCAAGAAAGTGCAAACTGGGAATTAAATTGCTATTAGAGGGTCATGGGTATGGCATTTACAATCTTGGTAGGGTACTTCTGTATATGTTCGATCCCTCTGTTTGGACTTCTGTGGCTAAGGACTTTTAGTGTTTACGCATTATCTCTCAATCTTCTAAATTTGTTCTTTTTTTTTTCCCCCTCTTCTGGGGGTAGCTTTGTTGTTAGTCTTTTGTTCTTGGGCCATTTTGTTTTCTTCATTGTCTTGTATATTATTTCATTTGTTCTTCATCAAAGTTGGCCTTTTCGTTTTTCTTTACAATGGCATTCAAGAAAAAAGAGAGCCCACTTCTTGGGAGACTTTGGTTTGAAAGTAATGCAGAGAGTTTTTCGTGGTAAAGACTAACAGTGATCTTTTTTGGGATTTTAGTCACACTTTTTGCCCCTAATTGGTTCTCTACTTCAAAATTCTTTTTGTAATTATTGCCTAACTCAGTTCTACACCATTTGGGCTTCTGTTTTGTAACCCGTTGGCGTGTGTGGAGATATCTCATCTCTCCCCTTCTCTTGTAGTCTCTCTTTGATTATTGTAAGTGTTGTTTCTTAACGAAAGAAAAAAACAAAAAATAAAAAAAAGAGAGCCCACAAAATATTGGCCTTTGCATTTCTCAAAATGTTGCTGAGGATAAACTTGGTTGATAAATTAGTCATGCTTTTCGTTCCAAATTGCCTATTGTTGATTTCACTCTCGGTCTTTTCTTTTCTATAAATATTAACTTACCATAGGTGATATGATGGATAAGAGTGGGTTGCATATAATACTGGAAATATAGAAGTTGAGTATACCTTTTGATTTTCTTTTTGTTTCCAGGTATCTCGCTATCTTTGGATCAGGTTTGCACCTATATTATTTTCTTAAGCTCTAATTTTTTTTGTGCTTTTTTGTCTTAGAAAAAAGAATTATCTTTCTACTTTTTATAATGGTTGTCTTTCTGTAGTGGAACGTTCTCCGAAATCATGTAGAAGAAATTGACAAGGCTGTTAATGAAAACTCGTCAGGAGATTAGAGCAGGCATCTTTTGTTGATATTAGTAGCAAGTGTATTGCTCTGTAGGATTATTCTGCTATATGACGTCGAAACTTTGATCTTTTGTACAGCCAATGGGCTTGTTTTTGGTGGAAATGAAGACCACTGAGCAGGTAACTTAGCATTTGTATTTACATTATCACTGTATTGACATTTTGAATTGTAGACCAGAGACATGATATTATTATGATATAGTATGGCATAACTGACAATATTACTATTCTCAATTAGTGGATAATTGGGTATCAAATTGACATTTTCATCAGTAGTCTGAATAGGTTACAGCAATTCTCAGAGATATTTAGTCCAAGGTGCTAACTACTTTAAACCTCTTTGCCATAAAATTCTAACTACTTGGTTATTACATATTTAGCTTCAATGCCCTCAGTTCTTGAGCCCACAAAGTGTAGCTTGAATTCTTTGCTACAACATCTTTAGAAACCTCCTTTCTTTCAATCAATCCTCTGGCATACCTTTCAAAGTTCTCTAGACTTTTCCATATTGGAGCCAACTTTCTCACATCTCCTTCACATTTAATGCTTTCCAGGAGGTCTTTTGCTTCCTCCAACCTTGCCCAAAAGCATGAATCTTGAGTTAAGCTTGCATATTTCATTCTATGAGTATTCCCTTCCTCTGTAACTTCTCTCCCTCTCCACCATTTGTCAAAAATCTCATATCTTCTCTCTCTTCCGTATTTCAAATAATGACCTTGGACAAGGTGCTTATCACGACGGTAATATTCCGCAATGTCCAATGGCTCTACCAGGAGTTTGTAGAAATGTGAAGCATTGACCCACTTTGCCCTTGTGTTAAAATCTGGAGGAAGCTCATTGTTCTCCCACATGTCGATCACTCTGTTCCAGAATGTTGCGAGCTTGTGCCTGTTCATGTTTACTCGAGCATGTCTTACTGAAGCATCTACTTTCTTGAAGCAATCGTAGTAACCCAATTGGTCATCCGCTTCATCACAAGAGGCTTTGTACCATTCTATCTCAGCTCTGTAAGGTGTAATCTTTGATAAGCTTATAGCTAGTTTTGCAGAATTCAAGTTCGGTGTTTGTCCTATTCTCCTTGCTGTTCTCAAGCTATGTTCGGCCACTCGAGCAGCTTCATCCTGCAATTTTGAAATAAGCTCTAGTTAGTTCTAAAATCAAAGTTGTAGGTTCTGTTATAAGGAAAGTTGAAGGTTTTATTACTTGGAAAGGTATTCCTGCTGACTGCAATGCTAGAGCAAGCCCTGCTTCATAGCTTGAATTAGGAAGACACTCTGTGGTGAAGCTTTTCCTCTCCATACATTCAACTCCAACCTTTTTCACATAATCTCCATAATTGAGATGGTCCTCAATGCTCAAGTTTGGAGCACTTGTTTTGAGCATCAAATAGAGCATCTTCAGAACGGATATGGCATTATCCAAACAAATTGCACCATGTTCCGAGCAAAAGAAGAAGTTCCCAAATGGCCAAAACTGACTTCGTACCGACCCCTCTCCTGGGTTAGATATCGTGTTGGAGTGAGCCAATACGACCTGGAAGAGCTTGTCTTTCTCTCTTTCTGGCAATTGGGCAGCAAGCTTCCCAAACTGTGGAGAGCACATTGACAAATGCCAATATCTAATCAGGATATGGAGCTTGGGGGCGAGAGAGGAAAGTGGAGTAGAGAGAAGCCTTGGCATAATGTCATGGCTCGAGACTACGTGGCAGAACTTTCCACACCATCGTTCTCTTTGAATGGCTCTTGAAAGTGATTCGTTGCCTATTAATGGGGAGCCAAAGGTGATGCATAGAATTGGGTGATGTGTTGTTTTGGTATGAAAGAAAGAGAGCAGCCATAGTGTACATAATGTGGCTGCTGCTCCTCCAAGTGAATGACCTGTAATTACTATTGACTTGCTTTTCTCCATTACTTTTGTCATCTGCAACATTTGAG

mRNA sequence

ATGAAAGAAGATAAACAAGAAATTAGGGAAAACCTGATGGAGGGGGCTGTGACCATATCAAGTATCGGACCAAAAAGCGGTGGGTGCACCATTCCTAGGCTTGCAATGAATATTATGATAAATAAGGCTAGAGGAAGTTTCAAAAGAGCTTCTCAGTTCCACCACTTTGGTAGGAACGTGAAAGGACGTATAATATGTGGGCAGGTTGGACAAGATAGCATTCAAGAGGGTATCTCGCTATCTTTGGATCAGTGGAACGTTCTCCGAAATCATGTAGAAGAAATTGACAAGGCTGTTAATGAAAACTCGTCAGGAGATTAGAGCAGGCATCTTTTGTTGATATTAGTAGCAAGTGTATTGCTCTGTAGGATTATTCTGCTATATGACGTCGAAACTTTGATCTTTTGTACAGCCAATGGGCTTGTTTTTGGTGGAAATGAAGACCACTGAGCAGGTAACTTAGCATTTGTATTTACATTATCACTGTATTGACATTTTGAATTGTAGACCAGAGACATGATATTATTATGATATAGTATGGCATAACTGACAATATTACTATTCTCAATTAGTGGATAATTGGGTATCAAATTGACATTTTCATCAGTAGTCTGAATAGGTTACAGCAATTCTCAGAGATATTTAGTCCAAGGTGCTAACTACTTTAAACCTCTTTGCCATAAAATTCTAACTACTTGGTTATTACATATTTAGCTTCAATGCCCTCAGTTCTTGAGCCCACAAAGTGTAGCTTGAATTCTTTGCTACAACATCTTTAGAAACCTCCTTTCTTTCAATCAATCCTCTGGCATACCTTTCAAAGTTCTCTAGACTTTTCCATATTGGAGCCAACTTTCTCACATCTCCTTCACATTTAATGCTTTCCAGGAGGTCTTTTGCTTCCTCCAACCTTGCCCAAAAGCATGAATCTTGAGTTAAGCTTGCATATTTCATTCTATGAGTATTCCCTTCCTCTGTAACTTCTCTCCCTCTCCACCATTTGTCAAAAATCTCATATCTTCTCTCTCTTCCGTATTTCAAATAATGACCTTGGACAAGGTGCTTATCACGACGGTAATATTCCGCAATGTCCAATGGCTCTACCAGGAGTTTGTAGAAATGTGAAGCATTGACCCACTTTGCCCTTGTGTTAAAATCTGGAGGAAGCTCATTGTTCTCCCACATGTCGATCACTCTGTTCCAGAATGTTGCGAGCTTGTGCCTGTTCATGTTTACTCGAGCATGTCTTACTGAAGCATCTACTTTCTTGAAGCAATCGTAGTAACCCAATTGGTCATCCGCTTCATCACAAGAGGCTTTGTACCATTCTATCTCAGCTCTGTAAGGTGTAATCTTTGATAAGCTTATAGCTAGTTTTGCAGAATTCAAGTTCGGTGTTTGTCCTATTCTCCTTGCTGTTCTCAAGCTATGTTCGGCCACTCGAGCAGCTTCATCCTGCAATTTTGAAATAAGCTCTAGTTAGTTCTAAAATCAAAGTTGTAGGTTCTGTTATAAGGAAAGTTGAAGGTTTTATTACTTGGAAAGGTATTCCTGCTGACTGCAATGCTAGAGCAAGCCCTGCTTCATAGCTTGAATTAGGAAGACACTCTGTGGTGAAGCTTTTCCTCTCCATACATTCAACTCCAACCTTTTTCACATAATCTCCATAATTGAGATGGTCCTCAATGCTCAAGTTTGGAGCACTTGTTTTGAGCATCAAATAGAGCATCTTCAGAACGGATATGGCATTATCCAAACAAATTGCACCATGTTCCGAGCAAAAGAAGAAGTTCCCAAATGGCCAAAACTGACTTCGTACCGACCCCTCTCCTGGGTTAGATATCGTGTTGGAGTGAGCCAATACGACCTGGAAGAGCTTGTCTTTCTCTCTTTCTGGCAATTGGGCAGCAAGCTTCCCAAACTGTGGAGAGCACATTGACAAATGCCAATATCTAATCAGGATATGGAGCTTGGGGGCGAGAGAGGAAAGTGGAGTAGAGAGAAGCCTTGGCATAATGTCATGGCTCGAGACTACGTGGCAGAACTTTCCACACCATCGTTCTCTTTGAATGGCTCTTGAAAGTGATTCGTTGCCTATTAATGGGGAGCCAAAGGTGATGCATAGAATTGGGTGATGTGTTGTTTTGGTATGAAAGAAAGAGAGCAGCCATAGTGTACATAATGTGGCTGCTGCTCCTCCAAGTGAATGACCTGTAATTACTATTGACTTGCTTTTCTCCATTACTTTTGTCATCTGCAACATTTGAG

Coding sequence (CDS)

ATGAAAGAAGATAAACAAGAAATTAGGGAAAACCTGATGGAGGGGGCTGTGACCATATCAAGTATCGGACCAAAAAGCGGTGGGTGCACCATTCCTAGGCTTGCAATGAATATTATGATAAATAAGGCTAGAGGAAGTTTCAAAAGAGCTTCTCAGTTCCACCACTTTGGTAGGAACGTGAAAGGACGTATAATATGTGGGCAGGTTGGACAAGATAGCATTCAAGAGGGTATCTCGCTATCTTTGGATCAGTGGAACGTTCTCCGAAATCATGTAGAAGAAATTGACAAGGCTGTTAATGAAAACTCGTCAGGAGATTAG

Protein sequence

MKEDKQEIRENLMEGAVTISSIGPKSGGCTIPRLAMNIMINKARGSFKRASQFHHFGRNVKGRIICGQVGQDSIQEGISLSLDQWNVLRNHVEEIDKAVNENSSGD
Homology
[Close]
BLAST of Clc04G02060 vs. NCBI nr
Match: XP_038881105.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hispida])

HSP 1 Score: 64.7 bits (156), Expect = 5.5e-07
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVLRNHVEEIDKAVNENSSGD
Sbjct: 73  KKGISLSLDQWNVLRNHVEEIDKAVNENSSGD 104

[Close]
BLAST of Clc04G02060 vs. NCBI nr
Match: XP_004146395.1 (RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis sativus] >KGN54787.1 hypothetical protein Csa_012558 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVL NHVEEIDKAVNENSSGD
Sbjct: 73  KKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

[Close]
BLAST of Clc04G02060 vs. NCBI nr
Match: XP_008442140.1 (PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVL NHVEEIDKAVNENSSGD
Sbjct: 73  KKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

[Close]
BLAST of Clc04G02060 vs. NCBI nr
Match: XP_022932999.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVLRNHV+EIDKAVNENS GD
Sbjct: 73  KKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104

[Close]
BLAST of Clc04G02060 vs. NCBI nr
Match: XP_023543027.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVLRNHV+EIDKAVNENS GD
Sbjct: 73  KKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104

[Close]
BLAST of Clc04G02060 vs. ExPASy TrEMBL
Match: A0A0A0L2F1 (PC4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G496770 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVL NHVEEIDKAVNENSSGD
Sbjct: 73  KKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

[Close]
BLAST of Clc04G02060 vs. ExPASy TrEMBL
Match: A0A1S3B4K6 (RNA polymerase II transcriptional coactivator KIWI isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486087 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVL NHVEEIDKAVNENSSGD
Sbjct: 73  KKGISLSLDQWNVLLNHVEEIDKAVNENSSGD 104

[Close]
BLAST of Clc04G02060 vs. ExPASy TrEMBL
Match: A0A6J1EYI2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439635 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVLRNHV+EIDKAVNENS GD
Sbjct: 73  KKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104

[Close]
BLAST of Clc04G02060 vs. ExPASy TrEMBL
Match: A0A6J1D5M3 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017843 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.6e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLS+DQWNVLRNHVEEIDKAVNENS G+
Sbjct: 73  KKGISLSMDQWNVLRNHVEEIDKAVNENSLGN 104

[Close]
BLAST of Clc04G02060 vs. ExPASy TrEMBL
Match: A0A6J1IRG1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478052 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENSSGD 107
           ++GISLSLDQWNVLRNHV+EIDKAV+ENS GD
Sbjct: 73  KKGISLSLDQWNVLRNHVDEIDKAVDENSLGD 104

[Close]
BLAST of Clc04G02060 vs. TAIR 10
Match: AT5G09240.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 44.7 bits (104), Expect = 5.5e-05
Identity = 20/29 (68.97%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENS 104
           ++GISLSL+QWN LRNH E+IDKA++E S
Sbjct: 80  KQGISLSLEQWNDLRNHEEDIDKALSELS 108

[Close]
BLAST of Clc04G02060 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 43.9 bits (102), Expect = 9.4e-05
Identity = 18/29 (62.07%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 75  QEGISLSLDQWNVLRNHVEEIDKAVNENS 104
           ++GISLS+DQWN LRNH E+I+KA+++ S
Sbjct: 79  KKGISLSVDQWNTLRNHAEDIEKALSDLS 107

The following BLAST results are available for this feature:
BLAST of Clc04G02060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038881105.15.5e-0793.75RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hi... [more]
XP_004146395.13.6e-0690.63RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumis sativus] ... [more]
XP_008442140.13.6e-0690.63PREDICTED: RNA polymerase II transcriptional coactivator KIWI isoform X1 [Cucumi... [more]
XP_022932999.16.1e-0687.50RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita mo... [more]
XP_023543027.16.1e-0687.50RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pe... [more]
BLAST of Clc04G02060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc04G02060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2F11.7e-0690.63PC4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G496770 PE=3 SV... [more]
A0A1S3B4K61.7e-0690.63RNA polymerase II transcriptional coactivator KIWI isoform X1 OS=Cucumis melo OX... [more]
A0A6J1EYI22.9e-0687.50RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ... [more]
A0A6J1D5M38.6e-0684.38RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica ... [more]
A0A6J1IRG11.1e-0584.38RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ... [more]
BLAST of Clc04G02060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09240.15.5e-0568.97ssDNA-binding transcriptional regulator [more]
AT5G09250.19.4e-0562.07ssDNA-binding transcriptional regulator [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10Transcriptional Coactivator Pc4; Chain Acoord: 70..101
e-value: 2.5E-5
score: 25.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G02060.2Clc04G02060.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding