Clc03G12190 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G12190
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposon protein
Location	ClcChr03: 18654998 .. 18655990 (+)
RNA-Seq Expression	Clc03G12190
Synteny	Clc03G12190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTAGTAGTAAGAGGACGAAGCACGTATGGTCTAAGGTGGAGGACGCTAAGTTGGTGGAAGCCCTACTCTACTTGGTAAAGACCGGTTGGAGGTCTGAAAATGGGACGTTTCAACCTGAATACTTACAGCACCTGAAGCGAATTCTGCATGAAAAGGTGCCTGGGTGCGCACTTAATCAAAACACCATCGAGTGCAAGGTGAGGAGTCTGAAGAAACAGTACAATGCAGTATCAGAGATGTTAGGTCAGTCGGGATTCGGTTGGAACGAAGAGTTTAAATGTATCCAAGTCGAGAGGGGGATTTTCGATCTTTGGGTTCGGGTAAGATTTTAAAAAAAAAAATCTACCGTTACATGTTAATTATGTAAATATTAATAATATGTACATGTATAAATGCAGAGTCATCCTAGTGCAAAGGGGATGTAGAACAAGTTGTTCCCCCATTACGATGACCTCTCCACCGTCTTTAGGAAAAATAGAGATGTAGGACAATCAAGTGAAGACCCACATGTGATGGTGAGCAATGCATTCAGAGAGTTTGAAGATGAGATTCGACTTGGAACGCAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCTGGATGGAACGAATGAAGAGACAACGGAGCAATCTACAGGTAGAGAGACACTTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGACCATCATTCCAAGCTGAAATGATCGACATCATGAGATCGACTGTTGAGATGCAGAACACACACATAAATAGACTTGCATCGTGGCAAAAGGAGAAGTATGAGCTGGAGTTCGGTCGTCGGAAGGAAGTAGTAAACGCCATATACAGCATCGACGACTTGACTGAGGATGACCAAGTGACCCTTATTGACATACTTATCATAGACATTCAGAAGACAGATTGCTTCCTTATAGTACCAGAACACGCACGGAAGAGGTACTGTCTTCGTCTACTAGGAAGAAACATGTAG

mRNA sequence

ATGGCAGGTAGTAGTAAGAGGACGAAGCACGTATGGTCTAAGGTGGAGGACGCTAAGTTGGTGGAAGCCCTACTCTACTTGGTAAAGACCGGTTGGAGGTCTGAAAATGGGACGTTTCAACCTGAATACTTACAGCACCTGAAGCGAATTCTGCATGAAAAGGTGCCTGGGTGCGCACTTAATCAAAACACCATCGAGTGCAAGGTGAGGAGTCTGAAGAAACAGTACAATGCAGTATCAGAGATGTTAGGTCAGTCGGGATTCGGTTGGAACGAAGAGTTTAAATGTATCCAAGTCGAGAGGGGGATTTTCGATCTTTGGGTTCGGAACAAGTTGTTCCCCCATTACGATGACCTCTCCACCGTCTTTAGGAAAAATAGAGATGTAGGACAATCAAGTGAAGACCCACATGTGATGGTGAGCAATGCATTCAGAGAGTTTGAAGATGAGATTCGACTTGGAACGCAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCTGGATGGAACGAATGAAGAGACAACGGAGCAATCTACAGGTAGAGAGACACTTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGACCATCATTCCAAGCTGAAATGATCGACATCATGAGATCGACTGTTGAGATGCAGAACACACACATAAATAGACTTGCATCGTGGCAAAAGGAGAAGTATGAGCTGGAGTTCGGTCGTCGGAAGGAAGTAGTAAACGCCATATACAGCATCGACGACTTGACTGAGGATGACCAAGTGACCCTTATTGACATACTTATCATAGACATTCAGAAGACAGATTGCTTCCTTATAGTACCAGAACACGCACGGAAGAGGTACTGTCTTCGTCTACTAGGAAGAAACATGTAG

Coding sequence (CDS)

ATGGCAGGTAGTAGTAAGAGGACGAAGCACGTATGGTCTAAGGTGGAGGACGCTAAGTTGGTGGAAGCCCTACTCTACTTGGTAAAGACCGGTTGGAGGTCTGAAAATGGGACGTTTCAACCTGAATACTTACAGCACCTGAAGCGAATTCTGCATGAAAAGGTGCCTGGGTGCGCACTTAATCAAAACACCATCGAGTGCAAGGTGAGGAGTCTGAAGAAACAGTACAATGCAGTATCAGAGATGTTAGGTCAGTCGGGATTCGGTTGGAACGAAGAGTTTAAATGTATCCAAGTCGAGAGGGGGATTTTCGATCTTTGGGTTCGGAACAAGTTGTTCCCCCATTACGATGACCTCTCCACCGTCTTTAGGAAAAATAGAGATGTAGGACAATCAAGTGAAGACCCACATGTGATGGTGAGCAATGCATTCAGAGAGTTTGAAGATGAGATTCGACTTGGAACGCAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCTGGATGGAACGAATGAAGAGACAACGGAGCAATCTACAGGTAGAGAGACACTTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGACCATCATTCCAAGCTGAAATGATCGACATCATGAGATCGACTGTTGAGATGCAGAACACACACATAAATAGACTTGCATCGTGGCAAAAGGAGAAGTATGAGCTGGAGTTCGGTCGTCGGAAGGAAGTAGTAAACGCCATATACAGCATCGACGACTTGACTGAGGATGACCAAGTGACCCTTATTGACATACTTATCATAGACATTCAGAAGACAGATTGCTTCCTTATAGTACCAGAACACGCACGGAAGAGGTACTGTCTTCGTCTACTAGGAAGAAACATGTAG

Protein sequence

MAGSSKRTKHVWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCALNQNTIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLWVRNKLFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPLNLDGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQKEKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLRLLGRNM

Homology

[Close]

BLAST of Clc03G12190 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])

HSP 1 Score: 422.9 bits (1086), Expect = 2.2e-114
Identity = 223/305 (73.11%), Postives = 239/305 (78.36%), Query Frame = 0


Query: 1   MAGSSKRTKHVWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCAL 60
           MAGS KR+KHVWSKVED KLVEALLYLV+TGWRS+NGTF+  YLQ+L+RILHEKVPGCAL
Sbjct: 1   MAGSGKRSKHVWSKVEDTKLVEALLYLVETGWRSDNGTFRLGYLQYLERILHEKVPGCAL 60

Query: 61  NQNTIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLWVR---------NK 120
           NQNTIECKVRSLKKQYNAVSEML QSGFGWNEEFKC+QVE+ IFDLWVR         NK
Sbjct: 61  NQNTIECKVRSLKKQYNAVSEMLSQSGFGWNEEFKCVQVEKEIFDLWVRSHLNAKGMWNK 120

Query: 121 LFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPLN 180
            F HYDDLSTVF K+R                             +C TPEV Q +SPLN
Sbjct: 121 SFLHYDDLSTVFGKDR----------------------------ANCHTPEVCQAESPLN 180

Query: 181 LDGTNEETTEQSTGR-ETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQK 240
            D  +EE  EQSTGR   LAESSRGSKRKRPSFQAEMIDIMRSTVEMQ+TH+ RLASWQK
Sbjct: 181 QDEIDEEPAEQSTGRASVLAESSRGSKRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQK 240

Query: 241 EKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLRL 296
           EKYELEFGRRKEVVNAIYSID L EDDQVT ID+L+ DIQKTDCFL VPEHARKRYCL L
Sbjct: 241 EKYELEFGRRKEVVNAIYSIDGLDEDDQVTFIDLLVTDIQKTDCFLAVPEHARKRYCLHL 277

[Close]

BLAST of Clc03G12190 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])

HSP 1 Score: 410.2 bits (1053), Expect = 1.5e-110
Identity = 214/305 (70.16%), Postives = 239/305 (78.36%), Query Frame = 0


Query: 1   MAGSSKRTKHVWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCAL 60
           M G+SKR+KHVWSKVEDA+LVEALLYLV+TGWRS+NGTF+P YLQHL++ILHEKVPGCAL
Sbjct: 1   MTGNSKRSKHVWSKVEDARLVEALLYLVETGWRSDNGTFRPGYLQHLEQILHEKVPGCAL 60

Query: 61  NQNTIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLWVRN---------K 120
           N+NTIECKVRSLKKQYNAVSEML QSGF WNEEFKC+QVER IFDLWVR+         K
Sbjct: 61  NKNTIECKVRSLKKQYNAVSEMLSQSGFNWNEEFKCVQVEREIFDLWVRSHPNAKGMWKK 120

Query: 121 LFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPLN 180
            FPHYDDLS VF K+R                             DC TPEVRQT+SPLN
Sbjct: 121 PFPHYDDLSAVFGKDR----------------------------ADCHTPEVRQTESPLN 180

Query: 181 LDGTNEETTEQSTGRETL-AESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQK 240
            D  +EE  EQSTGR ++  ESSRGSKRKR SFQ EMIDI++STVEMQ+TH+ RLASWQ 
Sbjct: 181 QDEIDEEPAEQSTGRASVPTESSRGSKRKRSSFQVEMIDIVKSTVEMQSTHMGRLASWQN 240

Query: 241 EKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLRL 296
           EKYELE    KEVVNAIY+IDDL E+DQVTLID+++ DIQKTDCFL VPEHARKRYCLRL
Sbjct: 241 EKYELEL---KEVVNAIYNIDDLEENDQVTLIDLIVTDIQKTDCFLAVPEHARKRYCLRL 274

[Close]

BLAST of Clc03G12190 vs. NCBI nr
Match: XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])

HSP 1 Score: 378.3 bits (970), Expect = 6.3e-101
Identity = 198/301 (65.78%), Postives = 214/301 (71.10%), Query Frame = 0


Query: 4   SSKRTKHVWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCALNQN 63
           + KR+KHVWSKVEDAK VEALLYLV TGWRS+NGTF+ EYLQHL+RI HEKV GCALNQN
Sbjct: 42  NGKRSKHVWSKVEDAKFVEALLYLVDTGWRSDNGTFRLEYLQHLERIHHEKVLGCALNQN 101

Query: 64  TIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLWVR---------NKLFP 123
           TIECKVRSLKKQ NAVSEML QSGF WNEEFKC+QVER IFD WVR         NK FP
Sbjct: 102 TIECKVRSLKKQCNAVSEMLSQSGFDWNEEFKCVQVEREIFDPWVRSHPNAKGMWNKPFP 161

Query: 124 HYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPLNLDG 183
           HYDDLSTVF K + VGQSSEDP+VM +NAFREFEDEIRLG+QDC TPE            
Sbjct: 162 HYDDLSTVFGKYKAVGQSSEDPYVMTTNAFREFEDEIRLGSQDCHTPE------------ 221

Query: 184 TNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQKEKYE 243
                                                       +TH+ RLASWQKEKYE
Sbjct: 222 --------------------------------------------STHMGRLASWQKEKYE 281

Query: 244 LEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLRLLGRN 296
           LEFGRRKEVVNAIY+ID L EDDQVTLID+L+ DIQKT+CFL VPEHARKRYCLRLLGRN
Sbjct: 282 LEFGRRKEVVNAIYNIDGLDEDDQVTLIDLLVTDIQKTNCFLAVPEHARKRYCLRLLGRN 286

[Close]

BLAST of Clc03G12190 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 329.7 bits (844), Expect = 2.6e-86
Identity = 164/213 (77.00%), Postives = 182/213 (85.45%), Query Frame = 0


Query: 1   MAGSSKRTKHVWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCAL 60
           M  + KR+KH+WSKVEDAKLVEALLYLV+TGWRS+NGTF+P YLQHL+RILHEKVPGC L
Sbjct: 1   MTSNGKRSKHIWSKVEDAKLVEALLYLVETGWRSDNGTFRPGYLQHLERILHEKVPGCTL 60

Query: 61  NQNTIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLWVR---------NK 120
           NQNTIECKVRSLKKQYN VSEML QSGF WNEEFKC+QVER IFDLWV          NK
Sbjct: 61  NQNTIECKVRSLKKQYNIVSEMLSQSGFDWNEEFKCVQVEREIFDLWVLSHPNAKRMWNK 120

Query: 121 LFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPLN 180
            FPHYDD STVF K+R VG+SSEDP+VM +NAFREFEDEIRLG+QDCQTPEVRQT+SPLN
Sbjct: 121 PFPHYDDFSTVFGKDRVVGKSSEDPYVMATNAFREFEDEIRLGSQDCQTPEVRQTESPLN 180

Query: 181 LDGTNEETTEQSTGRETL-AESSRGSKRKRPSF 204
            D  +EE  EQSTGR ++ A+SSRGSKRKRPSF
Sbjct: 181 QDEIDEEPAEQSTGRASVPAKSSRGSKRKRPSF 213

[Close]

BLAST of Clc03G12190 vs. NCBI nr
Match: XP_038877407.1 (uncharacterized protein LOC120069696 [Benincasa hispida])

HSP 1 Score: 324.7 bits (831), Expect = 8.2e-85
Identity = 182/288 (63.19%), Postives = 199/288 (69.10%), Query Frame = 0


Query: 18  AKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCALNQNTIECKVRSLKKQYN 77
           AKL+E LLYLVK GWRS  G F  +    L      K P  ALNQNTIECKVRSLKKQYN
Sbjct: 7   AKLMEDLLYLVKIGWRSIMGRFDQDTYNTLSEFCMIKCP--ALNQNTIECKVRSLKKQYN 66

Query: 78  AVSEMLGQSGFGWNEEFKCIQVERGIFDLWVR---------NKLFPHYDDLSTVFRKNRD 137
           A+SEML QSGF WNEEFKC+QVER IF+LWVR         NK FPHYDDLST       
Sbjct: 67  AISEMLSQSGFDWNEEFKCVQVEREIFNLWVRSHPNAKGMWNKPFPHYDDLST------- 126

Query: 138 VGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPLNLDGTNEETTEQSTGRET 197
                                       DC TPEV Q +S LN D  +EE TEQSTGR +
Sbjct: 127 ----------------------------DCHTPEVCQIESLLNQDEIDEEPTEQSTGRTS 186

Query: 198 L-AESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQKEKYELEFGRRKEVVNAI 257
           +  ESSRGSKRKR SFQ EMIDIMRSTVEM +TH+ RLASWQK+KYELEFGR+KEVVNAI
Sbjct: 187 IPVESSRGSKRKRSSFQVEMIDIMRSTVEMHSTHMGRLASWQKKKYELEFGRQKEVVNAI 246

Query: 258 YSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLRLLGRNM 296
           Y+ID L ED QVTLID+++ DIQKTDCFL VPEHA KRYCLRLLGRNM
Sbjct: 247 YNIDGLDEDTQVTLIDLVVTDIQKTDCFLAVPEHAWKRYCLRLLGRNM 257

[Close]

BLAST of Clc03G12190 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.3e-47
Identity = 122/305 (40.00%), Postives = 172/305 (56.39%), Query Frame = 0


Query: 1   MAGSSKRTKHVWSKVEDAKLVEALLYLVKT-GWRSENGTFQPEYLQHLKRILHEKVPGCA 60
           MA  S+  KH W+K E+ K VE L+ LV + GWRS+NGTFQP YL  L+R++ EK+PG  
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  LNQ-NTIECKVRSLKKQYNAVSEMLGQ--SGFGWNEEFKCIQVERGIFDLWVR------- 120
           + + +TI+C V+SLKK Y+A++EM G   SGFGWNEEF+CI  ER +FD W++       
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 --NKLFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLG-TQDCQTPEVRQT 180
             +K FP+YDDLS VF K+R  G  SE    + SN    F D I LG + D   P +   
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 DSPLNLDGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLA 240
              ++ D        Q++ R      S  SKRKR S + E ++++RS +E  N  +  +A
Sbjct: 181 GVHMSPDEMFGIRAGQASERR---NCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIA 240

Query: 241 SWQKEKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRY 292
            W KEK  +E   R +VV  +  I  L   D+  L+ IL   ++  + FL +P   +  Y
Sbjct: 241 DWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 300

[Close]

BLAST of Clc03G12190 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.3e-47
Identity = 122/305 (40.00%), Postives = 172/305 (56.39%), Query Frame = 0


Query: 1   MAGSSKRTKHVWSKVEDAKLVEALLYLVKT-GWRSENGTFQPEYLQHLKRILHEKVPGCA 60
           MA  S+  KH W+K E+ K VE L+ LV + GWRS+NGTFQP YL  L+R++ EK+PG  
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  LNQ-NTIECKVRSLKKQYNAVSEMLGQ--SGFGWNEEFKCIQVERGIFDLWVR------- 120
           + + +TI+C V+SLKK Y+A++EM G   SGFGWNEEF+CI  ER +FD W++       
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 --NKLFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLG-TQDCQTPEVRQT 180
             +K FP+YDDLS VF K+R  G  SE    + SN    F D I LG + D   P +   
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 DSPLNLDGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLA 240
              ++ D        Q++ R      S  SKRKR S + E ++++RS +E  N  +  +A
Sbjct: 181 GVHMSPDEMFGIRAGQASERR---NCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIA 240

Query: 241 SWQKEKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRY 292
            W KEK  +E   R +VV  +  I  L   D+  L+ IL   ++  + FL +P   +  Y
Sbjct: 241 DWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 300

[Close]

BLAST of Clc03G12190 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 110/304 (36.18%), Postives = 170/304 (55.92%), Query Frame = 0


Query: 1   MAGSSKRTKHVWSKVEDAKLVEALLYLVKT-GWRSENGTFQPEYLQHLKRILHEKVPGCA 60
           M  SS+  KH W+K E+A LVE L+ LV   GWRS+NGTF+P YL  L R++  K+PG  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  LNQNTIECKVRSLKKQYNAVSEMLGQ--SGFGWNEEFKCIQVERGIFDLW-------VRN 120
           ++ +TI+ +++ +K+ ++A++EM G   SGFGWN+E KCI  E+ +FD W       + N
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLN 120

Query: 121 KLFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPL 180
           K F HYD+LS VF K+R  G  +E    + SN    ++ E      D   P +      +
Sbjct: 121 KSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGLNM 180

Query: 181 NLDGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQK 240
           + D   E  T + + R  +   S GSKRKRP    +  DI+R+ +E  N  ++R+A W  
Sbjct: 181 SPDDLMETRTARVSERRNV---SSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPI 240

Query: 241 EKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLRL 295
            + +     R+E+V  + +I +LT  D+  L+ IL+ ++     FL VP+H +  YC  +
Sbjct: 241 LQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLI 300

[Close]

BLAST of Clc03G12190 vs. ExPASy TrEMBL
Match: A0A5A7U9V6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004400 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 109/304 (35.86%), Postives = 170/304 (55.92%), Query Frame = 0


Query: 1   MAGSSKRTKHVWSKVEDAKLVEALLYLVKT-GWRSENGTFQPEYLQHLKRILHEKVPGCA 60
           M  SS+  KH W+K E+A LVE L+ LV   GWRS+NGTF+P YL  L R++  K+PG  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLMELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  LNQNTIECKVRSLKKQYNAVSEMLGQ--SGFGWNEEFKCIQVERGIFDLW-------VRN 120
           ++ +TI+ +++ +K+ ++A++EM G   SGFGWN+E KCI  E+ +FD W       + N
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLN 120

Query: 121 KLFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPL 180
           K F HYD+LS VF K+R +G  +E    + SN    ++        D   P +      +
Sbjct: 121 KEFVHYDELSYVFGKDRAIGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNM 180

Query: 181 NLDGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQK 240
           + D   E  T + + R  +   S GSKRKRP    +  DI+R+ +E  N  ++R+A W  
Sbjct: 181 SPDDLMETRTARVSERRNV---SSGSKRKRPGHATDSGDIVRTPIEYGNEQLHRIAEWPI 240

Query: 241 EKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLRL 295
            + +     R+E+V  + +I +LT  D+  L+ IL+ ++     FL VP+H +  YC  +
Sbjct: 241 LQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKSFLEVPDHMKYPYCSLI 300

[Close]

BLAST of Clc03G12190 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-41
Identity = 109/304 (35.86%), Postives = 169/304 (55.59%), Query Frame = 0


Query: 1   MAGSSKRTKHVWSKVEDAKLVEALLYLVKT-GWRSENGTFQPEYLQHLKRILHEKVPGCA 60
           M  SS+  KH W+K E+A LVE L+ LV   GWRS+NGTF+P YL  L R++  K+PG  
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  LNQNTIECKVRSLKKQYNAVSEMLGQ--SGFGWNEEFKCIQVERGIFDLW-------VRN 120
           ++ +TI+ +++ +K+ ++A++EM G   SGFGWN+E KCI  E+ +FD W       + N
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLN 120

Query: 121 KLFPHYDDLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPL 180
           K F HYD+LS VF K+R  G  +E    + SN    ++        D   P +      +
Sbjct: 121 KSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGLNM 180

Query: 181 NLDGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQK 240
           + D   E  T + + R  +   S GSKRKRP    +  DI+R+ +E  N  ++R+A W  
Sbjct: 181 SPDDLMETRTARVSERRNV---SSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPI 240

Query: 241 EKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLRL 295
            + +     R+E+V  + +I +LT  D+  L+ IL+ ++     FL VP+H +  YC  +
Sbjct: 241 LQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLI 300

[Close]

BLAST of Clc03G12190 vs. TAIR 10
Match: AT4G02550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 370 Blast hits to 300 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 354; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-06
Identity = 73/308 (23.70%), Postives = 124/308 (40.26%), Query Frame = 0


Query: 6   KRTKH-----VWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCAL 65
           K  KH     +WS   D  L+EAL    K G + +   F  +        ++ +      
Sbjct: 11  KEMKHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDK-CFNDKAYTAACVAVNTRFNLNLT 70

Query: 66  NQNTIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLW------------V 125
           +Q  I  +++++KK+Y  + ++L + GF WN   K I  E    +LW             
Sbjct: 71  SQKAIN-RLKTIKKRYRVMRDILSRDGFWWNSSTKMIDCESD--ELWRRYIAVNPDAKAF 130

Query: 126 RNKLFPHYDDLSTVFRKNRDVGQ----SSEDPHVMVSNAFREFEDE---IRLGTQDCQTP 185
           R K    Y++L TV    +  G+      E  H +  N  ++FE++     LG+ +    
Sbjct: 131 RGKQIEMYEELRTVCGDYQTPGKYNKVKKESSHHL--NDVKQFEEDSVSFPLGSSE---- 190

Query: 186 EVRQTDSPLNLDGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTH 245
           E   TD   +  G +E   E+S       +  R     RPS ++   D  +  + +  + 
Sbjct: 191 EHSDTDGTESYAGASEYMHEESQDLPPPRDPLR-----RPSKRSRNSDPCQEAMLVVASS 250

Query: 246 INRLASWQKEKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEH 290
           I RLA    +   L     +E++ A+  ID+L E  Q+   + L  D  K   F+     
Sbjct: 251 IRRLADAVVQSKTLI--NTEELLKAVMEIDELEEAKQMYAFEYLNGDPVKARAFMAYNNR 301

[Close]

BLAST of Clc03G12190 vs. TAIR 10
Match: AT4G02550.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-06
Identity = 73/308 (23.70%), Postives = 124/308 (40.26%), Query Frame = 0


Query: 6   KRTKH-----VWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCAL 65
           K  KH     +WS   D  L+EAL    K G + +   F  +        ++ +      
Sbjct: 26  KEMKHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDK-CFNDKAYTAACVAVNTRFNLNLT 85

Query: 66  NQNTIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLW------------V 125
           +Q  I  +++++KK+Y  + ++L + GF WN   K I  E    +LW             
Sbjct: 86  SQKAIN-RLKTIKKRYRVMRDILSRDGFWWNSSTKMIDCESD--ELWRRYIAVNPDAKAF 145

Query: 126 RNKLFPHYDDLSTVFRKNRDVGQ----SSEDPHVMVSNAFREFEDE---IRLGTQDCQTP 185
           R K    Y++L TV    +  G+      E  H +  N  ++FE++     LG+ +    
Sbjct: 146 RGKQIEMYEELRTVCGDYQTPGKYNKVKKESSHHL--NDVKQFEEDSVSFPLGSSE---- 205

Query: 186 EVRQTDSPLNLDGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTH 245
           E   TD   +  G +E   E+S       +  R     RPS ++   D  +  + +  + 
Sbjct: 206 EHSDTDGTESYAGASEYMHEESQDLPPPRDPLR-----RPSKRSRNSDPCQEAMLVVASS 265

Query: 246 INRLASWQKEKYELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEH 290
           I RLA    +   L     +E++ A+  ID+L E  Q+   + L  D  K   F+     
Sbjct: 266 IRRLADAVVQSKTLI--NTEELLKAVMEIDELEEAKQMYAFEYLNGDPVKARAFMAYNNR 316

[Close]

BLAST of Clc03G12190 vs. TAIR 10
Match: AT4G02550.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 350 Blast hits to 284 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 331; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 9.0e-05
Identity = 72/297 (24.24%), Postives = 115/297 (38.72%), Query Frame = 0


Query: 6   KRTKH-----VWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCAL 65
           K  KH     +WS   D  L+EAL    K G + +   F  +        ++ +      
Sbjct: 11  KEMKHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDK-CFNDKAYTAACVAVNTRFNLNLT 70

Query: 66  NQNTIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLWVRNKLFPHYDDLS 125
           +Q  I  +++++KK+Y  + ++L + GF WN   K I  E    +LW R           
Sbjct: 71  SQKAIN-RLKTIKKRYRVMRDILSRDGFWWNSSTKMIDCESD--ELWRR----------- 130

Query: 126 TVFRKNRDVGQSSEDPHVMVSNAFR----EFEDEIRLGTQDCQTP----EVRQTDSPLNL 185
                N D            + AFR    E  +E+R    D QTP    E   TD   + 
Sbjct: 131 -YIAVNPD------------AKAFRGKQIEMYEELRTVCGDYQTPGSSEEHSDTDGTESY 190

Query: 186 DGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQKEK 245
            G +E   E+S       +  R     RPS ++   D  +  + +  + I RLA    + 
Sbjct: 191 AGASEYMHEESQDLPPPRDPLR-----RPSKRSRNSDPCQEAMLVVASSIRRLADAVVQS 250

Query: 246 YELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLR 290
             L     +E++ A+  ID+L E  Q+   + L  D  K   F+      RK +  R
Sbjct: 251 KTLI--NTEELLKAVMEIDELEEAKQMYAFEYLNGDPVKARAFMAYNNRMRKMFLFR 272

[Close]

BLAST of Clc03G12190 vs. TAIR 10
Match: AT4G02550.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2). )

HSP 1 Score: 45.4 bits (106), Expect = 9.0e-05
Identity = 72/297 (24.24%), Postives = 115/297 (38.72%), Query Frame = 0


Query: 6   KRTKH-----VWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCAL 65
           K  KH     +WS   D  L+EAL    K G + +   F  +        ++ +      
Sbjct: 11  KEMKHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDK-CFNDKAYTAACVAVNTRFNLNLT 70

Query: 66  NQNTIECKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLWVRNKLFPHYDDLS 125
           +Q  I  +++++KK+Y  + ++L + GF WN   K I  E    +LW R           
Sbjct: 71  SQKAIN-RLKTIKKRYRVMRDILSRDGFWWNSSTKMIDCESD--ELWRR----------- 130

Query: 126 TVFRKNRDVGQSSEDPHVMVSNAFR----EFEDEIRLGTQDCQTP----EVRQTDSPLNL 185
                N D            + AFR    E  +E+R    D QTP    E   TD   + 
Sbjct: 131 -YIAVNPD------------AKAFRGKQIEMYEELRTVCGDYQTPGSSEEHSDTDGTESY 190

Query: 186 DGTNEETTEQSTGRETLAESSRGSKRKRPSFQAEMIDIMRSTVEMQNTHINRLASWQKEK 245
            G +E   E+S       +  R     RPS ++   D  +  + +  + I RLA    + 
Sbjct: 191 AGASEYMHEESQDLPPPRDPLR-----RPSKRSRNSDPCQEAMLVVASSIRRLADAVVQS 250

Query: 246 YELEFGRRKEVVNAIYSIDDLTEDDQVTLIDILIIDIQKTDCFLIVPEHARKRYCLR 290
             L     +E++ A+  ID+L E  Q+   + L  D  K   F+      RK +  R
Sbjct: 251 KTLI--NTEELLKAVMEIDELEEAKQMYAFEYLNGDPVKARAFMAYNNRMRKMFLFR 272

[Close]

BLAST of Clc03G12190 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 9.9e-04
Identity = 39/189 (20.63%), Postives = 81/189 (42.86%), Query Frame = 0


Query: 7   RTKHVWSKVEDAKLVEALLYLVKTGWRSENGTFQPEYLQHLKRILHEKVPGCALNQNTIE 66
           RT+  W+   +   ++ +L  +  G R+ + TF  +    +  + + K  G   +++ ++
Sbjct: 10  RTRTYWTPTMERFFIDLMLEHLHRGNRTGH-TFNKQAWNEMLTVFNSKF-GSQYDKDVLK 69

Query: 67  CKVRSLKKQYNAVSEMLGQSGFGWNEEFKCIQVERGIFDLWV---------RNKLFPHYD 126
            +  +L KQYN V  +L   GF W++  + +  +  ++ L++         + K   ++ 
Sbjct: 70  SRYTNLWKQYNDVKCLLDHGGFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFS 129

Query: 127 DLSTVFRKNRDVGQSSEDPHVMVSNAFREFEDEIRLGTQDCQTPEVRQTDSPLNLDGTNE 186
           DL  ++      G +  D    +S+   E EDEI   +      E  +T+  L +D    
Sbjct: 130 DLCLIY------GYTVADGRYSMSSHDLEIEDEINGESVVLSGKESSKTEWTLEMDQYFV 189

The following BLAST results are available for this feature:

BLAST of Clc03G12190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896380.1	2.2e-114	73.11	uncharacterized protein LOC120084641 [Benincasa hispida]	[more]
XP_038887234.1	1.5e-110	70.16	uncharacterized protein LOC120077425 [Benincasa hispida]	[more]
XP_038895773.1	6.3e-101	65.78	uncharacterized protein LOC120083935 [Benincasa hispida]	[more]
XP_038902479.1	2.6e-86	77.00	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
XP_038877407.1	8.2e-85	63.19	uncharacterized protein LOC120069696 [Benincasa hispida]	[more]

BLAST of Clc03G12190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G12190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	3.3e-47	40.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	3.3e-47	40.00	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7UME4	2.4e-42	36.18	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9V6	1.2e-41	35.86	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DPR5	1.6e-41	35.86	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc03G12190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02550.1	2.8e-06	23.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02550.3	2.8e-06	23.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02550.2	9.0e-05	24.24	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02550.4	9.0e-05	24.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	9.9e-04	20.63	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 12..98 e-value: 2.4E-11 score: 44.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..203
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 4..292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G12190.1	Clc03G12190.1	mRNA