Clc03G03570 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G03570
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pectinesterase
Location	ClcChr03: 3623366 .. 3623866 (-)
RNA-Seq Expression	Clc03G03570
Synteny	Clc03G03570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAATCGCTAACCTTCGAGAACTCAGTCGAACCTCAAAACTGCCAAGTAATGGTTGTTGTTGACCATGCCAACCATGTTGCATATTACAAGTGCATATTTCTAGGCTTACAAGATACACCAAAGACAATACAAAATTTTCAAGGAGTGTGACACCTACGGAAGCGTCAACTTTATTTTTGGAAGTGGGTTTGCTATGTTCCAAGACTGTAATATATACGCTCGTATAATCAACAATTCCATCAACGTCACTGCACAATCAAAAGATGAACTAATGTCCAAAAGTGGCTTCTCCCGTCAAAACTGTATTGTCACGGTTTCGCAGGAGATAGCGCCCAAGAAGGGCAATGTTAGGATCTTTCTAGATTGGCCATGGAGACAATATTCAACTATTGTGTTCATTGGAGTCATTTTTTGGATGACTTTGTGGAATTGGAGGGATGGTTGGAGTTGGAAGAGGTACCAGTAGTAACTACTTATTTTGAGTTTAACAATTGA

mRNA sequence

atggcacaatcgctaaccttcgagaactcagtcgaacctcaaaactgccaagtaatggttgttgttgaccatgccaaccatgttgcatattacaacgtcaactttatttttggaagtgggtttgctatgttccaagactgtaatatatacgctcgtataatcaacaattccatcaacgtcactgcacaatcaaaagatgaactaatgtccaaaagtggcttctcccgtcaaaactgtattgtcacggtttcgcaggagatagcgcccaagaagggcaatgttaggatctttctagattggccatggagacaatattcaactattggatggttggagttggaagaggtaccagtagtaactacttattttgagtttaacaattga

Coding sequence (CDS)

ATGGCACAATCGCTAACCTTCGAGAACTCAGTCGAACCTCAAAACTGCCAAGTAATGGTTGTTGTTGACCATGCCAACCATGTTGCATATTACAACGTCAACTTTATTTTTGGAAGTGGGTTTGCTATGTTCCAAGACTGTAATATATACGCTCGTATAATCAACAATTCCATCAACGTCACTGCACAATCAAAAGATGAACTAATGTCCAAAAGTGGCTTCTCCCGTCAAAACTGTATTGTCACGGTTTCGCAGGAGATAGCGCCCAAGAAGGGCAATGTTAGGATCTTTCTAGATTGGCCATGGAGACAATATTCAACTATTGGATGGTTGGAGTTGGAAGAGGTACCAGTAGTAACTACTTATTTTGAGTTTAACAATTGA

Protein sequence

MAQSLTFENSVEPQNCQVMVVVDHANHVAYYNVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIGWLELEEVPVVTTYFEFNN

Homology

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BLAST of Clc03G03570 vs. NCBI nr
Match: XP_008465578.1 (PREDICTED: pectinesterase 2-like, partial [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-29
Identity = 82/169 (48.52%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NV 60
           MA+SLTFENS  PQN Q + V D A+H AYY                           +V
Sbjct: 7   MAKSLTFENSAGPQNGQAVAVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNIYGSV 66

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SGFS QNC VTVS EI+  K N
Sbjct: 67  DFIFGHGRVMFQDCNIYARMPSNSITVTAQSKDFLRSISGFSFQNCTVTVSPEISSNKQN 126

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Sbjct: 127 VKVFLGRPWRQYSNVVFMESFLDDVVASEGWMEWKGVPVNNLFYGEFNN 175

[Close]

BLAST of Clc03G03570 vs. NCBI nr
Match: KAA0055286.1 (putative pectinesterase/pectinesterase inhibitor 47 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-29
Identity = 82/169 (48.52%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NV 60
           MA+SLTFENS  PQN Q + V D A+H AYY                           +V
Sbjct: 99  MAKSLTFENSAGPQNGQAVAVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNIYGSV 158

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SGFS QNC VTVS EI+  K N
Sbjct: 159 DFIFGHGRVMFQDCNIYARMPSNSITVTAQSKDFLRSISGFSFQNCTVTVSPEISSNKQN 218

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Sbjct: 219 VKVFLGRPWRQYSNVVFMESFLDDVVASEGWMEWKGVPVNNLFYGEFNN 267

[Close]

BLAST of Clc03G03570 vs. NCBI nr
Match: TYJ99209.1 (pectinesterase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-29
Identity = 82/169 (48.52%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NV 60
           MA+SLTFENS  PQN Q + V D A+H AYY                           +V
Sbjct: 1   MAKSLTFENSAGPQNGQAVAVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNIYGSV 60

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SGFS QNC VTVS EI+  K N
Sbjct: 61  DFIFGHGRVMFQDCNIYARMPSNSITVTAQSKDFLRSISGFSFQNCTVTVSPEISSNKQN 120

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Sbjct: 121 VKVFLGRPWRQYSNVVFMESFLDDVVASEGWMEWKGVPVNNLFYGEFNN 169

[Close]

BLAST of Clc03G03570 vs. NCBI nr
Match: KAG6572387.1 (putative pectinesterase/pectinesterase inhibitor 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 76/169 (44.97%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------V 60
           MAQ L+FENS EPQN Q + V+D+A H  YYN                           V
Sbjct: 116 MAQHLSFENSAEPQNGQAVAVLDYAKHTVYYNCRFMSFQDTLYSKGEFQFFRECDIYGTV 175

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG+G A+FQDCNIYAR+  + I VTAQSK++ +S+SGFS QNC VTVS EI   K  
Sbjct: 176 DFIFGNGLAVFQDCNIYARLPMDEITVTAQSKEQSVSQSGFSFQNCTVTVSPEITANKTK 235

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V+I+L  PWR+YST+              GW+  E VP+   ++ EFNN
Sbjct: 236 VKIYLGRPWREYSTVVFMESFLDDNVQPQGWISWEGVPINNLFYAEFNN 284

[Close]

BLAST of Clc03G03570 vs. NCBI nr
Match: XP_023511664.1 (probable pectinesterase/pectinesterase inhibitor 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.6 bits (340), Expect = 3.0e-28
Identity = 76/169 (44.97%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------V 60
           MAQ L+FENS EPQN Q + V+D+A H  YY+                           V
Sbjct: 116 MAQHLSFENSAEPQNGQAVAVLDYAKHTVYYDCKFLSFQDTLYSKGEFQFFRECDIYGTV 175

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG+G A+FQDCNIYAR+  + I VTAQSK++ MS+SGFS QNC VTVS EI   K N
Sbjct: 176 DFIFGNGLAVFQDCNIYARLPMDEITVTAQSKEQSMSQSGFSFQNCTVTVSPEITANKTN 235

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V+I+L  PWR+YST+              GW+    VP+   ++ EFNN
Sbjct: 236 VKIYLGRPWREYSTVVFMESFLDDNVQPQGWISWGGVPINNLFYAEFNN 284

[Close]

BLAST of Clc03G03570 vs. ExPASy Swiss-Prot
Match: Q4PT34 (Probable pectinesterase 56 OS=Arabidopsis thaliana OX=3702 GN=PME56 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-11
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 33  VNFIFGSGFAMFQDCNIYARI--INNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPK 92
           V+FIFG   A+FQ C I AR   I  +  +TAQS++E  + SGFS Q C ++ S ++ P 
Sbjct: 193 VDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPI 252

Query: 93  KGNVRIFLDWPWRQYSTIGWLE 113
           KG V+ FL  PWR +S + ++E
Sbjct: 253 KGTVKTFLGRPWRAFSRVVFME 274

[Close]

BLAST of Clc03G03570 vs. ExPASy Swiss-Prot
Match: Q7Y201 (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana OX=3702 GN=PME13 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 8.6e-10
Identity = 46/173 (26.59%), Postives = 75/173 (43.35%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHAN--------------------HVAYY-------NV 60
           MAQS+ F N+  P+  Q + +   ++                    H  YY        +
Sbjct: 390 MAQSMGFRNTAGPEGHQAVAIRVQSDRSIFLNCRFEGYQDTLYAYTHRQYYRSCVIVGTI 449

Query: 61  NFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKK 120
           +FIFG   A+FQ+CNI+ R  +      VTAQ + +    +GF   NC +  ++++ P K
Sbjct: 450 DFIFGDAAAIFQNCNIFIRKGLPGQKNTVTAQGRVDKFQTTGFVVHNCKIAANEDLKPVK 509

Query: 121 GNVRIFLDWPWRQYS--------------TIGWLELEEV--PVVTTYF-EFNN 128
              + +L  PW+ YS               +GWL  +E    + T Y+ E+NN
Sbjct: 510 EEYKSYLGRPWKNYSRTIIMESKIENVIDPVGWLRWQETDFAIDTLYYAEYNN 562

[Close]

BLAST of Clc03G03570 vs. ExPASy Swiss-Prot
Match: Q9FF77 (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana OX=3702 GN=PME47 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 46/172 (26.74%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NV 60
           +A  +TF N+  P+  Q + V ++A+   +Y                            +
Sbjct: 399 VAVDVTFRNTAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTI 458

Query: 61  NFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKK 120
           +FIFG+  A+FQ+CNIYAR  + N    VTA  + +   K+G S  NC +  + ++A   
Sbjct: 459 DFIFGNAAAIFQNCNIYARKPMANQKNAVTAHGRTDPNQKTGISIINCTIGAAPDLAADP 518

Query: 121 GNVRIFLDWPWRQYS--------------TIGWLELEEVPVVTT--YFEFNN 128
            +   FL  PW+ YS               +GWLE      + T  Y E++N
Sbjct: 519 KSTMTFLGRPWKPYSRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDN 570

[Close]

BLAST of Clc03G03570 vs. ExPASy Swiss-Prot
Match: O04887 (Pectinesterase 2 OS=Citrus sinensis OX=2711 GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-09
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 30  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIA 89
           Y  V+FIFG+   + Q+CNI+AR   N  N +TAQ + +    +G    NC VT + ++ 
Sbjct: 345 YGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLK 404

Query: 90  PKKGNVRIFLDWPWRQYS 107
           P + +V+ FL  PW+QYS
Sbjct: 405 PVQSSVKTFLGRPWKQYS 422

[Close]

BLAST of Clc03G03570 vs. ExPASy Swiss-Prot
Match: O22149 (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana OX=3702 GN=PME17 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-09
Identity = 39/115 (33.91%), Postives = 57/115 (49.57%), Query Frame = 0


Query: 30  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIA 89
           Y  V+FIFG+  A+ Q+CNI+AR   +  N +TAQ + +    +G    N  VT + ++ 
Sbjct: 347 YGTVDFIFGNAAAVLQNCNIFARRPRSKTNTITAQGRSDPNQNTGIIIHNSRVTAASDLR 406

Query: 90  PKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTT--YFEFNN 128
           P  G+ + +L  PWRQYS                GWLE +    + T  Y EF N
Sbjct: 407 PVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQN 461

[Close]

BLAST of Clc03G03570 vs. ExPASy TrEMBL
Match: A0A5A7ULX7 (Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001290 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 82/169 (48.52%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NV 60
           MA+SLTFENS  PQN Q + V D A+H AYY                           +V
Sbjct: 99  MAKSLTFENSAGPQNGQAVAVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNIYGSV 158

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SGFS QNC VTVS EI+  K N
Sbjct: 159 DFIFGHGRVMFQDCNIYARMPSNSITVTAQSKDFLRSISGFSFQNCTVTVSPEISSNKQN 218

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Sbjct: 219 VKVFLGRPWRQYSNVVFMESFLDDVVASEGWMEWKGVPVNNLFYGEFNN 267

[Close]

BLAST of Clc03G03570 vs. ExPASy TrEMBL
Match: A0A5D3BJU4 (Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004190 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 82/169 (48.52%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NV 60
           MA+SLTFENS  PQN Q + V D A+H AYY                           +V
Sbjct: 1   MAKSLTFENSAGPQNGQAVAVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNIYGSV 60

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SGFS QNC VTVS EI+  K N
Sbjct: 61  DFIFGHGRVMFQDCNIYARMPSNSITVTAQSKDFLRSISGFSFQNCTVTVSPEISSNKQN 120

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Sbjct: 121 VKVFLGRPWRQYSNVVFMESFLDDVVASEGWMEWKGVPVNNLFYGEFNN 169

[Close]

BLAST of Clc03G03570 vs. ExPASy TrEMBL
Match: A0A1S3CP42 (Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103503212 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 82/169 (48.52%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NV 60
           MA+SLTFENS  PQN Q + V D A+H AYY                           +V
Sbjct: 7   MAKSLTFENSAGPQNGQAVAVFDKADHTAYYKCRFLGFQDTLYVNGKYQFFKESNIYGSV 66

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SGFS QNC VTVS EI+  K N
Sbjct: 67  DFIFGHGRVMFQDCNIYARMPSNSITVTAQSKDFLRSISGFSFQNCTVTVSPEISSNKQN 126

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Sbjct: 127 VKVFLGRPWRQYSNVVFMESFLDDVVASEGWMEWKGVPVNNLFYGEFNN 175

[Close]

BLAST of Clc03G03570 vs. ExPASy TrEMBL
Match: A0A6J1HZD2 (Pectinesterase OS=Cucurbita maxima OX=3661 GN=LOC111468060 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.6e-28
Identity = 76/169 (44.97%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------V 60
           MAQ L+FENS EPQN Q + V+D+A H  YY+                           V
Sbjct: 116 MAQHLSFENSAEPQNGQAVAVLDYAKHTVYYDCRFLSFQDTLYSKGERQFFRECDIYGTV 175

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG+G A+FQDCNIYAR+  + I VTAQSK++ +S+SGFS QNC VTVS EIA  K  
Sbjct: 176 DFIFGNGLAVFQDCNIYARLPMDEITVTAQSKEQSISQSGFSFQNCTVTVSPEIAANKTK 235

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V+I+L  PWR YST+              GW+  E VP+   ++ EFNN
Sbjct: 236 VKIYLGRPWRPYSTVVFMESFLDDNVQLQGWILWEGVPINNLFYAEFNN 284

[Close]

BLAST of Clc03G03570 vs. ExPASy TrEMBL
Match: A0A6J1GM54 (Pectinesterase OS=Cucurbita moschata OX=3662 GN=LOC111455508 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.6e-28
Identity = 75/169 (44.38%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------V 60
           MAQ L+FENS EPQN Q + V+D+A H  YY+                           V
Sbjct: 116 MAQHLSFENSAEPQNGQAVAVLDYAKHSVYYDCRFMSFQDTLYSKGEFQFFRECDIYGTV 175

Query: 61  NFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGN 120
           +FIFG+G A+FQDCNIYAR+  + I VTAQSK++ +S+SGFS QNC VTVS EI   K  
Sbjct: 176 DFIFGNGLAVFQDCNIYARLPMDEITVTAQSKEQSVSQSGFSFQNCTVTVSPEITANKTK 235

Query: 121 VRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN 128
           V+I+L  PWR+YST+              GW+  E VP+   ++ EFNN
Sbjct: 236 VKIYLGRPWREYSTVVFMESFLDDNVQPQGWISWEGVPINNLFYAEFNN 284

[Close]

BLAST of Clc03G03570 vs. TAIR 10
Match: AT1G11370.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 4.3e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 33  VNFIFGSGFAMFQDCNIYARI--INNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPK 92
           V+FIFG   A+FQ C I AR   I  +  +TAQS++E  + SGFS Q C ++ S ++ P 
Sbjct: 193 VDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPI 252

Query: 93  KGNVRIFLDWPWRQYSTIGWLE 113
           KG V+ FL  PWR +S + ++E
Sbjct: 253 KGTVKTFLGRPWRAFSRVVFME 274

[Close]

BLAST of Clc03G03570 vs. TAIR 10
Match: AT2G26450.1 (Plant invertase/pectin methylesterase inhibitor superfamily )

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-11
Identity = 46/173 (26.59%), Postives = 75/173 (43.35%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHAN--------------------HVAYY-------NV 60
           MAQS+ F N+  P+  Q + +   ++                    H  YY        +
Sbjct: 390 MAQSMGFRNTAGPEGHQAVAIRVQSDRSIFLNCRFEGYQDTLYAYTHRQYYRSCVIVGTI 449

Query: 61  NFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKK 120
           +FIFG   A+FQ+CNI+ R  +      VTAQ + +    +GF   NC +  ++++ P K
Sbjct: 450 DFIFGDAAAIFQNCNIFIRKGLPGQKNTVTAQGRVDKFQTTGFVVHNCKIAANEDLKPVK 509

Query: 121 GNVRIFLDWPWRQYS--------------TIGWLELEEV--PVVTTYF-EFNN 128
              + +L  PW+ YS               +GWL  +E    + T Y+ E+NN
Sbjct: 510 EEYKSYLGRPWKNYSRTIIMESKIENVIDPVGWLRWQETDFAIDTLYYAEYNN 562

[Close]

BLAST of Clc03G03570 vs. TAIR 10
Match: AT5G04970.1 (Plant invertase/pectin methylesterase inhibitor superfamily )

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 46/172 (26.74%), Postives = 74/172 (43.02%), Query Frame = 0


Query: 1   MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NV 60
           +A  +TF N+  P+  Q + V ++A+   +Y                            +
Sbjct: 399 VAVDVTFRNTAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTI 458

Query: 61  NFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKK 120
           +FIFG+  A+FQ+CNIYAR  + N    VTA  + +   K+G S  NC +  + ++A   
Sbjct: 459 DFIFGNAAAIFQNCNIYARKPMANQKNAVTAHGRTDPNQKTGISIINCTIGAAPDLAADP 518

Query: 121 GNVRIFLDWPWRQYS--------------TIGWLELEEVPVVTT--YFEFNN 128
            +   FL  PW+ YS               +GWLE      + T  Y E++N
Sbjct: 519 KSTMTFLGRPWKPYSRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDN 570

[Close]

BLAST of Clc03G03570 vs. TAIR 10
Match: AT2G45220.1 (Plant invertase/pectin methylesterase inhibitor superfamily )

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-10
Identity = 39/115 (33.91%), Postives = 57/115 (49.57%), Query Frame = 0


Query: 30  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIA 89
           Y  V+FIFG+  A+ Q+CNI+AR   +  N +TAQ + +    +G    N  VT + ++ 
Sbjct: 347 YGTVDFIFGNAAAVLQNCNIFARRPRSKTNTITAQGRSDPNQNTGIIIHNSRVTAASDLR 406

Query: 90  PKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTT--YFEFNN 128
           P  G+ + +L  PWRQYS                GWLE +    + T  Y EF N
Sbjct: 407 PVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQN 461

[Close]

BLAST of Clc03G03570 vs. TAIR 10
Match: AT4G02330.1 (Plant invertase/pectin methylesterase inhibitor superfamily )

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-10
Identity = 36/116 (31.03%), Postives = 57/116 (49.14%), Query Frame = 0


Query: 30  YYNVNFIFGSGFAMFQDCNIYAR-IINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEI 89
           Y  V+FIFG+   +FQDCN+Y R  + N  N +TAQ + +    +G S  NC +  + ++
Sbjct: 406 YGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDL 465

Query: 90  APKKGNVRIFLDWPWRQYS--------------TIGWLELEEVPVVTT--YFEFNN 128
                 V+ +L  PW++YS               +GW E      ++T  Y E+NN
Sbjct: 466 VSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNN 521

The following BLAST results are available for this feature:

BLAST of Clc03G03570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465578.1	2.8e-29	48.52	PREDICTED: pectinesterase 2-like, partial [Cucumis melo]	[more]
KAA0055286.1	2.8e-29	48.52	putative pectinesterase/pectinesterase inhibitor 47 [Cucumis melo var. makuwa]	[more]
TYJ99209.1	2.8e-29	48.52	pectinesterase 2-like [Cucumis melo var. makuwa]	[more]
KAG6572387.1	1.8e-28	44.97	putative pectinesterase/pectinesterase inhibitor 7, partial [Cucurbita argyrospe...	[more]
XP_023511664.1	3.0e-28	44.97	probable pectinesterase/pectinesterase inhibitor 7 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc03G03570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4PT34	6.0e-11	43.90	Probable pectinesterase 56 OS=Arabidopsis thaliana OX=3702 GN=PME56 PE=2 SV=1	[more]
Q7Y201	8.6e-10	26.59	Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana OX=3...	[more]
Q9FF77	1.9e-09	26.74	Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana OX=3...	[more]
O04887	2.5e-09	39.74	Pectinesterase 2 OS=Citrus sinensis OX=2711 GN=PECS-2.1 PE=2 SV=1	[more]
O22149	3.3e-09	33.91	Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Clc03G03570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULX7	1.3e-29	48.52	Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001290...	[more]
A0A5D3BJU4	1.3e-29	48.52	Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00419...	[more]
A0A1S3CP42	1.3e-29	48.52	Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103503212 PE=4 SV=1	[more]
A0A6J1HZD2	5.6e-28	44.97	Pectinesterase OS=Cucurbita maxima OX=3661 GN=LOC111468060 PE=4 SV=1	[more]
A0A6J1GM54	5.6e-28	44.38	Pectinesterase OS=Cucurbita moschata OX=3662 GN=LOC111455508 PE=4 SV=1	[more]

BLAST of Clc03G03570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11370.1	4.3e-12	43.90	Pectin lyase-like superfamily protein	[more]
AT2G26450.1	6.1e-11	26.59	Plant invertase/pectin methylesterase inhibitor superfamily	[more]
AT5G04970.1	1.4e-10	26.74	Plant invertase/pectin methylesterase inhibitor superfamily	[more]
AT2G45220.1	2.3e-10	33.91	Plant invertase/pectin methylesterase inhibitor superfamily	[more]
AT4G02330.1	6.8e-10	31.03	Plant invertase/pectin methylesterase inhibitor superfamily	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 32..126 e-value: 3.6E-12 score: 48.3
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 32..109 e-value: 1.0E-16 score: 60.6
None	No IPR available	PANTHER	PTHR31707:SF235	PECTINESTERASE	coord: 26..111
None	No IPR available	PANTHER	PTHR31707	PECTINESTERASE	coord: 26..111
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 2..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G03570.2	Clc03G03570.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
molecular_function	GO:0030599	pectinesterase activity