Clc03G01610 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G01610
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	methyl-CpG-binding domain-containing protein 5
Location	ClcChr03: 1386749 .. 1389773 (-)
RNA-Seq Expression	Clc03G01610
Synteny	Clc03G01610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAAAAAGAAAAGTGATAGTTATTTGTATTAGTGTAAAGTGGGAAAGACAATAAATAATCTCCCCTGTTTCTAACGTCCTCTTTCCCGTTTCTTCCTTCGTTCTTCTTCCCCCAAACCCCCAACCCACATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGATCCGACCCGACCCGATTTACCTTTCTCCCACCACCTCCCACCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCACCGTCCCATCCCGAACCCTACCTTCTTCTCCTCCCAACCACGCCCGAGATCTTGACCGGACTCCTCGCAAGAAATCCGATACTTCTTCCACTCGACGATCTCCATTACGTGCCCAGCCTCTCAACTCTTACAATCTCCCTTCCGATTCTCCCGCTCCCAGGAATGGAGATTCTCCCGCATCCAAGAAGGTCTCAGCCTCTACCTCCCGAGGAACCGACGCCTCCTCCAAATCTGCCTTGTCCGAGAGGCCTAATTGGCTGCCCCCGGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACAGCTGGAACCGTCGATAAGGTGAATTGAATCTTTCTTTTATCTCTTTTAATCTCGACTTCCTTCCTCTTTACTGCCGTTTCCTGTTCCAAGTGGAGATAAATTTTTGTTTTGGTAATTAATTGACCATGCAACTAGTACTCTATTCCATGCCTCACGCTACTGAACTTCTCTGAATGACTGATGATAGAACAGAGGTTTACCGTTGCTGGAACTACTTTCCTTCTACTTATGAATGATTTCTGTGATACCTTTACTACGTTTGGAACTAAGGATTAACACATGAACCAATTGGGAAGAAGTTATCTTATCATTGTGCTACTGAAAATGATACCAAGTACCATTCCCTTGTCTGTTGTTAACTCATCAATTTTCGGGGAAATGAGGTATATCAAGTAGATAACGGTTTAATAACTACTCTGGATGTGATCATCTGAAAAATGGATCACTAGCGAAATTCGGTGTCATGTTGATGGGAATTGCAGTTTTAGTTACCTGATTGGGAATGAAGAAGTTCCATAGGAACAATTGAACTATAGGAATTCATTTCATTTTCATGATCGGGCTCTTCCTCTCTCTATAAATTTGTTTGTCCTTTACTTGGTGTATAGTATTTGAGTATGTTCTGGTGCACGCTTTTGTATGAGCTCATTTAACAATCCAAGCAATTCTGTCATGCAGTTAATGTAACAAGTCTTCATGGTCCTTTTCTTTGGATGGTGAACAAGCCTCGATGAACTTTGATATAGATTTATTTGGATTTTGGTACACTCTAGTTACCTACTCCCCGTTTATGTGAATTCAATTAGGACAACAGAGTTTGGTTGATTAGAATGAAGACCATGATTGGGAAAAGAATAACAAAAACCTCCACTGTTATGTTGATAACCAGTCCATAAACGGTCAGGATCAAATTTGTATGAGTGTGTGATTATTTGACTTCTCCATGCATGTTGATGAATAGATTTGGAGTCGATACTTGGACTCTTGTATGAATTGTGCAGCTTATAGTATATGTGACTAGTGCTTGGTGCTTGATATATGATGCTTCCCTAGAAGTCATGTTTGAGATGGGACTGCACCTCAATTTCATATTCTTCATTTTCCCTGTTTAAAACTACATTGGGATTGTTGATAGACAAAACAAGCAAAAGCAAGTTAAGTACAGTTTACAAGTACCATATAGCAATTATTGAGAACTGAGTTTGAGTGTCGTATGGAAATTGCTTATGAATTGAGTTCATGTCATGCTGAATTAATTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGGCTCCCTTTCCTTGTTATCCTGTTTTAAATATTTATCAAACAAACAAACAGTAAAGAATGTCAAAAGAATCTAATCTATCCCCATGTCCCTTGCAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCAACGGTGAGTTGAAGCTATCATTCCTTCTTTGGCACCCAATGGGATATTCCGATCTTCTCATCCATTTTTCAATTTTCCTGATTTGCAACTCTGCAGTCTACTGACGGTTCCGAAGAACCCAAGAGCAAGAAATCTTCCAGCAACGCTAAAACTGCTCCTTTATACTTTGATTTCTTCAATGTGCCTGAAAGGGTCGAATGGGTTCTCACAGACCCTTCTAAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCCGAATGTACTAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGAAGGCAACTTCATCCCTTTTGGACATTTTTTGGGACAACCTATTCAGGCAAGAACCATCCTCCCTCCCTCCCTCCCTCCCTCTAATGGCTTCCCATCTGCAATTCTTTTGGTCTTTTTTTTTTTTTCTTTGGAAGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTGAAAACCAGATTTGGTTAGGAAAAATTACTGCAAAAACATGACTCTATCTAACTGACTATGTCTTGGACTGGAAGAAGTGATCAATTTGTGTAGAAGAGGGCTGCTCAGTTCATTGTCAATCAAAAGTATTTGAATGAGGGGCTATTTCATTTTGATTCTATGCTCTTGCTCTTCATTTTGATCTACATCTGTATTTCTTTTATGATTCAAATATTTTTTTTTTGGCAATTATATTGATGTTGCATAGAATTAATGAAAACTACCAATTCTAATGATAAAGACTAGAATTAGGAAGAAATTTATGGATTGAAATAAAAACAAAGTGGAAGAATTGTAGTTTGTGTGTTCTGCAAATCATGCCTCTATATTTTAAGGGTGTAATTATTACTCTTAATTAAGACAACATTTCTTTTTCCATTTCTTTTTCTTTTTTTAAAAAGGTT

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAAAAAGAAAAGTGATAGTTATTTGTATTAGTGTAAAGTGGGAAAGACAATAAATAATCTCCCCTGTTTCTAACGTCCTCTTTCCCGTTTCTTCCTTCGTTCTTCTTCCCCCAAACCCCCAACCCACATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGATCCGACCCGACCCGATTTACCTTTCTCCCACCACCTCCCACCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCACCGTCCCATCCCGAACCCTACCTTCTTCTCCTCCCAACCACGCCCGAGATCTTGACCGGACTCCTCGCAAGAAATCCGATACTTCTTCCACTCGACGATCTCCATTACGTGCCCAGCCTCTCAACTCTTACAATCTCCCTTCCGATTCTCCCGCTCCCAGGAATGGAGATTCTCCCGCATCCAAGAAGGTCTCAGCCTCTACCTCCCGAGGAACCGACGCCTCCTCCAAATCTGCCTTGTCCGAGAGGCCTAATTGGCTGCCCCCGGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACAGCTGGAACCGTCGATAAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCAACGTCTACTGACGGTTCCGAAGAACCCAAGAGCAAGAAATCTTCCAGCAACGCTAAAACTGCTCCTTTATACTTTGATTTCTTCAATGTGCCTGAAAGGGTCGAATGGGTTCTCACAGACCCTTCTAAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCCGAATGTACTAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGAAGGCAACTTCATCCCTTTTGGACATTTTTTGGGACAACCTATTCAGGCAAGAACCATCCTCCCTCCCTCCCTCCCTCCCTCTAATGGCTTCCCATCTGCAATTCTTTTGGTCTTTTTTTTTTTTTCTTTGGAAGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTGAAAACCAGATTTGGTTAGGAAAAATTACTGCAAAAACATGACTCTATCTAACTGACTATGTCTTGGACTGGAAGAAGTGATCAATTTGTGTAGAAGAGGGCTGCTCAGTTCATTGTCAATCAAAAGTATTTGAATGAGGGGCTATTTCATTTTGATTCTATGCTCTTGCTCTTCATTTTGATCTACATCTGTATTTCTTTTATGATTCAAATATTTTTTTTTTGGCAATTATATTGATGTTGCATAGAATTAATGAAAACTACCAATTCTAATGATAAAGACTAGAATTAGGAAGAAATTTATGGATTGAAATAAAAACAAAGTGGAAGAATTGTAGTTTGTGTGTTCTGCAAATCATGCCTCTATATTTTAAGGGTGTAATTATTACTCTTAATTAAGACAACATTTCTTTTTCCATTTCTTTTTCTTTTTTTAAAAAGGTT

Coding sequence (CDS)

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGATCCGACCCGACCCGATTTACCTTTCTCCCACCACCTCCCACCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCACCGTCCCATCCCGAACCCTACCTTCTTCTCCTCCCAACCACGCCCGAGATCTTGACCGGACTCCTCGCAAGAAATCCGATACTTCTTCCACTCGACGATCTCCATTACGTGCCCAGCCTCTCAACTCTTACAATCTCCCTTCCGATTCTCCCGCTCCCAGGAATGGAGATTCTCCCGCATCCAAGAAGGTCTCAGCCTCTACCTCCCGAGGAACCGACGCCTCCTCCAAATCTGCCTTGTCCGAGAGGCCTAATTGGCTGCCCCCGGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACAGCTGGAACCGTCGATAAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCAACGTCTACTGACGGTTCCGAAGAACCCAAGAGCAAGAAATCTTCCAGCAACGCTAAAACTGCTCCTTTATACTTTGATTTCTTCAATGTGCCTGAAAGGGTCGAATGGGTTCTCACAGACCCTTCTAAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCCGAATGTACTAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGA

Protein sequence

MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLLGRSKV

Homology

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BLAST of Clc03G01610 vs. NCBI nr
Match: XP_038893740.1 (LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa hispida])

HSP 1 Score: 448.0 bits (1151), Expect = 5.8e-122
Identity = 233/270 (86.30%), Postives = 248/270 (91.85%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSST--VPSRTLPSSPPNH 60
           MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSF+DSS+  +P+ TLPS     
Sbjct: 26  MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFVDSSSSALPAPTLPS----- 85

Query: 61  ARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKV--SASTSRG- 120
            RDLDRTPRKK+++SST RSPLRA PLNS+NLP DS APRNGDSPA+KKV  SAS+SRG 
Sbjct: 86  -RDLDRTPRKKAESSSTPRSPLRAGPLNSFNLPPDSSAPRNGDSPATKKVSLSASSSRGT 145

Query: 121 TDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLE 180
           TDAS KSALSERPNWLPPGWVV+DRVRSSGATAGTVDKYYFDP+SNRRFRSKIEVLYFLE
Sbjct: 146 TDASLKSALSERPNWLPPGWVVQDRVRSSGATAGTVDKYYFDPISNRRFRSKIEVLYFLE 205

Query: 181 TGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDA 240
           TGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPSKDA
Sbjct: 206 TGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSKDA 265

Query: 241 WTPFIDNEKVPECTKREWVGAFQLLGRSKV 266
           WTPFI +EKV E TKR WVGAFQLLGRSKV
Sbjct: 266 WTPFIGSEKVRESTKRAWVGAFQLLGRSKV 289

[Close]

BLAST of Clc03G01610 vs. NCBI nr
Match: XP_022948610.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 414.8 bits (1065), Expect = 5.4e-112
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   R K DTS+T RSPL A PLN   LP DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSK+
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of Clc03G01610 vs. NCBI nr
Match: XP_023523162.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 218/265 (82.26%), Postives = 228/265 (86.04%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD T RKK DTS+T RSPL A PLN   LP DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGTHRKKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPS++ WTPFI
Sbjct: 181 KRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEVWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSKV
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Clc03G01610 vs. NCBI nr
Match: XP_022998335.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 412.9 bits (1060), Expect = 2.1e-111
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   RKK DTS+T RSPL A PLN   L  DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSKV
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Clc03G01610 vs. NCBI nr
Match: XP_022948611.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 411.4 bits (1056), Expect = 6.0e-111
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   R K DTS+T RSPL A PLN   LP DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSK+
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Clc03G01610 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27
Identity = 69/174 (39.66%), Postives = 97/174 (55.75%), Query Frame = 0


Query: 95  PAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKY 154
           P P N  +P   K     + G D           NWLPP W  E RVR+SG  AGTVDK+
Sbjct: 10  PPPENPATPVDSKSRKRATPGDD-----------NWLPPDWRTEIRVRTSGTKAGTVDKF 69

Query: 155 YFDPVSNRRFRSKIEVLYFLETGTLRKRK-KSLDGNPTSTDGSE-------EPKSKKSSS 214
           Y++P++ R+FRSK EVLY+LE GT +K+  K+ +   + ++ SE       + KS K  +
Sbjct: 70  YYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVT 129

Query: 215 NAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLL 261
                PL FDF NVPE+V W   + S++AW PFI + K+ E   ++W   F L+
Sbjct: 130 EPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Clc03G01610 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-27
Identity = 79/236 (33.47%), Postives = 122/236 (51.69%), Query Frame = 0


Query: 30  PPDPLLDAGSFIDSSTVPSRTLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYN 89
           PPDPLL +G+FI  S+    TL                     SS +R P++        
Sbjct: 10  PPDPLLASGAFI--SSAGDGTL--------------------DSSAKRRPIQ----GGIG 69

Query: 90  LPSDSPAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAG 149
           +     + R G +  + +V    +  T++ S+   +   NWLPPGW VED++R+SGATAG
Sbjct: 70  ISGSGESVRIGMANGTDQV----NHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAG 129

Query: 150 TVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAK 209
           +VDKYY++P + R+FRS+ EVLY+LE GT ++  K  +    + D  E   S + +  A 
Sbjct: 130 SVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTAT 189

Query: 210 T-----APLYFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLL 261
                  PL FDF N P++V W + +  ++ W P I + KV +  +R+W  AF  +
Sbjct: 190 VPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

[Close]

BLAST of Clc03G01610 vs. ExPASy Swiss-Prot
Match: Q9Z2E1 (Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 96  APRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYY 155
           APR    P     S    RG  A+      + P  LPPGW  E+ +R SG +AG  D YY
Sbjct: 124 APRRDPVPFPSGSSGPGPRGPRATESGKRMDCPA-LPPGWKKEEVIRKSGLSAGKSDVYY 183

Query: 156 FDPVSNRRFRSKIEVLYFL 175
           F P S ++FRSK ++  +L
Sbjct: 184 FSP-SGKKFRSKPQLARYL 200

[Close]

BLAST of Clc03G01610 vs. ExPASy Swiss-Prot
Match: Q9UBB5 (Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.1e-04
Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 96  APRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYY 155
           APR    P     +    RG  A+      + P  LPPGW  E+ +R SG +AG  D YY
Sbjct: 121 APRREPVPFPSGSAGPGPRGPRATESGKRMDCPA-LPPGWKKEEVIRKSGLSAGKSDVYY 180

Query: 156 FDPVSNRRFRSKIEVLYFL 175
           F P S ++FRSK ++  +L
Sbjct: 181 FSP-SGKKFRSKPQLARYL 197

[Close]

BLAST of Clc03G01610 vs. ExPASy TrEMBL
Match: A0A6J1GAC7 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.6e-112
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   R K DTS+T RSPL A PLN   LP DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSK+
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of Clc03G01610 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 1.0e-111
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   RKK DTS+T RSPL A PLN   L  DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSKV
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Clc03G01610 vs. ExPASy TrEMBL
Match: A0A6J1G9P7 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.9e-111
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   R K DTS+T RSPL A PLN   LP DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSK+
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Clc03G01610 vs. ExPASy TrEMBL
Match: A0A5D3BC42 (Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002210 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.4e-110
Identity = 222/276 (80.43%), Postives = 228/276 (82.61%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPLLDAGSFIDS----------STVPSR 60
           MSASGTS PD DWPR  DPTRPDLPFSHHLPPDPLL AGSFIDS          STVPS 
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 61  TLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVS 120
           TLPS      RDLDRTPRK   TSSTRRSPLR  PLNS+          NGDS  SKKVS
Sbjct: 61  TLPS------RDLDRTPRKTPQTSSTRRSPLRPDPLNSF----------NGDSSPSKKVS 120

Query: 121 ASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE 180
           AS S    ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE
Sbjct: 121 ASNS----ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE 180

Query: 181 VLYFLETGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLT 240
           VLYFLETGTLRKRKKSLDGNP+STDGS+EPK KKSSSNAK+APL FDFFNVPE+VEWVLT
Sbjct: 181 VLYFLETGTLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLT 240

Query: 241 DPSKDAWTPFIDNEKVPECTKREWVGAFQLLGRSKV 266
           DPS+DAWTPFIDNEKVPE TK EWVGAFQLLGRSKV
Sbjct: 241 DPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 256

[Close]

BLAST of Clc03G01610 vs. ExPASy TrEMBL
Match: A0A6J1K9Z4 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.4e-110
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   RKK DTS+T RSPL A PLN   L  DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKSKKSSSNAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPKSKKSSSNAK+APL FDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSKV
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Clc03G01610 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 125.2 bits (313), Expect = 8.0e-29
Identity = 69/174 (39.66%), Postives = 97/174 (55.75%), Query Frame = 0


Query: 95  PAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKY 154
           P P N  +P   K     + G D           NWLPP W  E RVR+SG  AGTVDK+
Sbjct: 10  PPPENPATPVDSKSRKRATPGDD-----------NWLPPDWRTEIRVRTSGTKAGTVDKF 69

Query: 155 YFDPVSNRRFRSKIEVLYFLETGTLRKRK-KSLDGNPTSTDGSE-------EPKSKKSSS 214
           Y++P++ R+FRSK EVLY+LE GT +K+  K+ +   + ++ SE       + KS K  +
Sbjct: 70  YYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVT 129

Query: 215 NAKTAPLYFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLL 261
                PL FDF NVPE+V W   + S++AW PFI + K+ E   ++W   F L+
Sbjct: 130 EPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Clc03G01610 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-28
Identity = 79/236 (33.47%), Postives = 122/236 (51.69%), Query Frame = 0


Query: 30  PPDPLLDAGSFIDSSTVPSRTLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYN 89
           PPDPLL +G+FI  S+    TL                     SS +R P++        
Sbjct: 10  PPDPLLASGAFI--SSAGDGTL--------------------DSSAKRRPIQ----GGIG 69

Query: 90  LPSDSPAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAG 149
           +     + R G +  + +V    +  T++ S+   +   NWLPPGW VED++R+SGATAG
Sbjct: 70  ISGSGESVRIGMANGTDQV----NHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAG 129

Query: 150 TVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAK 209
           +VDKYY++P + R+FRS+ EVLY+LE GT ++  K  +    + D  E   S + +  A 
Sbjct: 130 SVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTAT 189

Query: 210 T-----APLYFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLL 261
                  PL FDF N P++V W + +  ++ W P I + KV +  +R+W  AF  +
Sbjct: 190 VPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

The following BLAST results are available for this feature:

BLAST of Clc03G01610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893740.1	5.8e-122	86.30	LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa h...	[more]
XP_022948610.1	5.4e-112	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moscha...	[more]
XP_023523162.1	1.2e-111	82.26	methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998335.1	2.1e-111	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima...	[more]
XP_022948611.1	6.0e-111	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moscha...	[more]

BLAST of Clc03G01610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SNC0	1.1e-27	39.66	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LTJ1	4.3e-27	33.47	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9Z2E1	1.7e-04	39.24	Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2	[more]
Q9UBB5	5.1e-04	37.97	Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1	[more]

BLAST of Clc03G01610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAC7	2.6e-112	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita mosc...	[more]
A0A6J1KC76	1.0e-111	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1G9P7	2.9e-111	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita mosc...	[more]
A0A5D3BC42	1.4e-110	80.43	Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1K9Z4	1.4e-110	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxi...	[more]

BLAST of Clc03G01610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46580.1	8.0e-29	39.66	methyl-CPG-binding domain protein 5	[more]
AT5G59380.1	3.0e-28	33.47	methyl-CPG-binding domain 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 124..192 e-value: 1.4E-12 score: 47.1
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 121..193 score: 14.415644
None	No IPR available	GENE3D	3.30.890.10		coord: 97..212 e-value: 5.7E-21 score: 76.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..75
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 106..251
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 106..251
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 107..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G01610.1	Clc03G01610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding