Clc02G22820 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G22820
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA ligase
Location	ClcChr02: 34866210 .. 34868931 (-)
RNA-Seq Expression	Clc02G22820
Synteny	Clc02G22820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTCAATTCCATGGTTCAAATGAGGGGCAAGATCTTAGATTTCCAGAGGTGATGGTTGTTGGAGTCTAATTTGATAGAGATTAGGCTTGAGCATTGGTGGAATAGTTCAATACTGAGAGAAGTTTCTGCTTTGTCCATTTGTGAGTTTCAAACCCAAACTGATTAGCTATTTCATTTTTTGTGTAAGTATCAGCTCTGATACCATAAAGAAATTCAGGTCAGTTGTGGAATGTAAGTGCACTCTTTCTTATCTGAATTTTCAATTACAAGATGGGCAATATATACTACGTACATGAAACAAGTTGAGGGAAATAAAAAGGTCCAGGCAGTCACTAACGGCTACTGCCATATACATAGGAGTAAGGAGATCCTTGTTGTGAGAGTTTTCAAACAAGCAATACTTTCAATACTGGAGTTAAATGCCCAGGGAATAGACAAGGAAAACAAAACTATATAAGAAAATAGTAACAATGGCACATATCCAAAACAGTGAGACTTTGATTTGCTGTTTGAATGCAGGATTTAATTATCCCTTTACTTCTGAAATTTCACACATTGAAAGTTTGTATTTGCTTTACTTCATAACTTTATCTTATCGTGTTTTCTCTTGCTTTCTTGTAATGCTATTTTATTGTGCTCTATTAATTAATATTAGTTTGCAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCCCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAAGTAAGTGCTTCATATAGTCTGTATAAATGTTGTATGATAATCTCAACCGAGCTTTATGGATGCCTATGCATGCTTGTACACTGCAGCATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGTACTAATAACTATAACTGGAAAGTAGTTTTGGCCTATACATGCAATAATTGCATGTGACTTTTAATTAGTTAAAATTAAAATGAGATGGCTAGTCCTGTGAATCCAACCTGTAGGTGCACAAGTATGTATATGTCGTGTACATATATGAACTTATGTTATGTTGTTATAACTTATAATCCCCCTTTATATATTTCTAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGCATTGTAAGATAGGTAAGGATACGGAATGCTTTAACTTCGTTTTTCCATTCAAGCAATCAGTGCTTGTTCATTTTTTATATTCAACTATCTAATATTAAGTTTGGATGACTGGTAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGGTCTGTTATCTAATTCCTATTAAATGTGAACAATGGGTTCCCCATCTGATGCTACTTTTTAATTAAACATTTTCTTGTCAATTTTAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTGGTTTGAGCCTACTGAGGTAATAATGACGACTTCATCTCTGAAATCTCATTTTACATAGTCTTTTGACTCTTTTCTTACTCCTGTTGCCCATTTCCTCTTGAGATCATGCTGTATGTTTGGATTGAAAATTCATTCCCTTCAATGGTAGTATTTGAGGGTGGTGCGAGTTTTCATACCCCCTCCTTTTTGGTATTGTGCCTGTGGTGAATTTAAGGTATTTGTTGCACCCTCTCCCTCTTTGCAAAAAGAGAAGTCTGAAAATAACATGGAAAGAACCAAGAAGGTTGTTTTAGAGAGATTTTAGAATCAACAGATTCTGTTGGGACTTACATGGTTGAAGTTGAATGTCACTGGAGGTTTCTTCTTATTTATCCTTTCCTAATGATCCTCTTTCAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAGTCAAGGTTGTATTGTGTGCAAGTTTCTCTTTGCAGTTTTCTCCATCATCATTCTTCAATTCTTTCTGTTGTTCCTTTTTTCTTAGCCATCCATGATTTTCTGTTTGAAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGGTGAATCTTATTGCATGCCCATATTGATGTTCTTTTTTATACGGTTATCAATGGACGACATAACCAACTAGAAAAGCGAAAGGTGCATGCATGGAATTGGTGGGAGGAAATAGCATGTAACTCGTAAGAGGTAGAAAGGGAGAACCTTTAAGGAAGTTTAAAAAATAAAAAAGTTTCTCCAGTGGTCCAAATGACAGTAAAGGAATGGTTGGGGAAGAAAAAAGGGAAAAAGGAAAAAACAAGGGACTCCAATAAGAGGAAAACTGAAGCATCCCAAATATTAAAACCATATCTTTAATTCTCTGTCTCTCGGAGTATATGCTTAGTTCCATGAATTTTTCCATACTGTTCTTGTAATTCTTCTAACTATATGCACCCATTCCTTCTTAAAATTAGGTTGCCGACATGTATAATGCTCAGAAACACAACCCCCAAAACAATCAAGATGACAATGAAGACGACTAAGGATTGAAGTTTTAACTCTTTCCAAACATGTTGCTCGCTTGGTTTTCAACCTGATAATCATTGGCCAATGGCAAATTAAATTGTCTGGTCATGGTGCCATGGACCATGT

mRNA sequence

ATGCCCTTCAATTCCATGGTTCAAATGAGGGGCAAGATCTTAGATTTCCAGAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCCCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTGGTTTGAGCCTACTGAGGGTGGTGCGAGTTTTCATACCCCCTCCTTTTTGGTATTGTGCCTGTGGTGAATTTAAGGTATTTGTTGCACCCTCTCCCTCTTTGCAAAAAGAGAAGTCTGAAAATAACATGGAAAGAACCAAGAAGGTTGTTTTAGAGAGATTTTAGAATCAACAGATTCTGTTGGGACTTACATGGTTGAAGTTGAATGTCACTGGAGGTTTCTTCTTATTTATCCTTTCCTAATGATCCTCTTTCAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAGTCAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCCCCAAAACAATCAAGATGACAATGAAGACGACTAAGGATTGAAGTTTTAACTCTTTCCAAACATGTTGCTCGCTTGGTTTTCAACCTGATAATCATTGGCCAATGGCAAATTAAATTGTCTGGTCATGGTGCCATGGACCATGT

Coding sequence (CDS)

ATGCCCTTCAATTCCATGGTTCAAATGAGGGGCAAGATCTTAGATTTCCAGAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCCCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTGGTTTGAGCCTACTGAGGGTGGTGCGAGTTTTCATACCCCCTCCTTTTTGGTATTGTGCCTGTGGTGAATTTAAGGTATTTGTTGCACCCTCTCCCTCTTTGCAAAAAGAGAAGTCTGAAAATAACATGGAAAGAACCAAGAAGGTTGTTTTAGAGAGATTTTAG

Protein sequence

MPFNSMVQMRGKILDFQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVGLSLLRVVRVFIPPPFWYCACGEFKVFVAPSPSLQKEKSENNMERTKKVVLERF

Homology

[Close]

BLAST of Clc02G22820 vs. NCBI nr
Match: XP_022985559.1 (DNA ligase 1 [Cucurbita maxima])

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-42
Identity = 94/118 (79.66%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT    
Sbjct: 607 QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYG 666

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
Sbjct: 667 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 724

[Close]

BLAST of Clc02G22820 vs. NCBI nr
Match: XP_023512549.1 (DNA ligase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-42
Identity = 94/118 (79.66%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT    
Sbjct: 607 QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYG 666

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
Sbjct: 667 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 724

[Close]

BLAST of Clc02G22820 vs. NCBI nr
Match: KAG6570819.1 (DNA ligase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-42
Identity = 94/118 (79.66%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT    
Sbjct: 607 QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYG 666

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
Sbjct: 667 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 724

[Close]

BLAST of Clc02G22820 vs. NCBI nr
Match: KAG7010661.1 (DNA ligase 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-42
Identity = 94/118 (79.66%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT    
Sbjct: 611 QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYG 670

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
Sbjct: 671 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 728

[Close]

BLAST of Clc02G22820 vs. NCBI nr
Match: XP_022943872.1 (DNA ligase 1 [Cucurbita moschata])

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-42
Identity = 94/118 (79.66%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT    
Sbjct: 607 QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYG 666

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
Sbjct: 667 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 724

[Close]

BLAST of Clc02G22820 vs. ExPASy Swiss-Prot
Match: Q42572 (DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-35
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 19  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------ 78
           CEGLIIKTL+ DATYEP+KRS NWLKLKKDY+D+IGDS+DLVPIAAFHGRGKRT      
Sbjct: 595 CEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAF 654

Query: 79  ------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                             GTGFS+AML+ERS+SLRS+VI  PK YYR GD++NPDV
Sbjct: 655 LLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDV 710

[Close]

BLAST of Clc02G22820 vs. ExPASy Swiss-Prot
Match: P18858 (DNA ligase 1 OS=Homo sapiens OX=9606 GN=LIG1 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-23
Identity = 60/143 (41.96%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 18  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT----- 77
           SCEGL++KTL+ DATYE +KRS NWLKLKKDY+D +GD+LDLV I A+ GRGKR      
Sbjct: 718 SCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGG 777

Query: 78  -------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVGLS 137
                              GTGFS+  LEE   SL++ V+P P+ Y R    + PD  L 
Sbjct: 778 FLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLD 837

[Close]

BLAST of Clc02G22820 vs. ExPASy Swiss-Prot
Match: P37913 (DNA ligase 1 OS=Mus musculus OX=10090 GN=Lig1 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-23
Identity = 64/158 (40.51%), Postives = 82/158 (51.90%), Query Frame = 0


Query: 18  SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT----- 77
           SCEGL++KTL+ DATYE +KRS NWLKLKKDY+D +GD+LDLV I A+ GRGKR      
Sbjct: 716 SCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGG 775

Query: 78  -------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVGLS 137
                              GTGFS+  LEE   SL++ V+P P+ Y R    + PD  L 
Sbjct: 776 FLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRIDGAVAPDHWLD 835

Query: 138 LLRVVRVFIPPPFWYCACGEFK---VFVAPSPSLQKEK 149
                    P   W   C +     ++ A    + KEK
Sbjct: 836 ---------PSIVWEVKCADLSLSPIYPAARGLVDKEK 864

[Close]

BLAST of Clc02G22820 vs. ExPASy Swiss-Prot
Match: P51892 (DNA ligase 1 OS=Xenopus laevis OX=8355 GN=lig1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.8e-23
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 18   SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT----- 77
            SCEGL++KTL +DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ G+GKRT     
Sbjct: 871  SCEGLMVKTLEQDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRTGIYGG 930

Query: 78   -------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVGLS 137
                               GTGF++  LE+    L+  VI  P+SYYR+     PD    
Sbjct: 931  FLLASYDEESEEYQTICKIGTGFTDDDLEKHYNFLKDHVIENPRSYYRWDSATEPD---- 990

[Close]

BLAST of Clc02G22820 vs. ExPASy Swiss-Prot
Match: Q869E1 (DNA ligase 1 OS=Dictyostelium discoideum OX=44689 GN=lig1 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-22
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 18   SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT----- 77
            +CEGL++KTL   + YEPS+RS NWLK+KKDY+  + DSLDLVPI A++G+GKRT     
Sbjct: 994  NCEGLMVKTLKEKSIYEPSRRSYNWLKIKKDYMQGMTDSLDLVPIGAWYGKGKRTGTYGA 1053

Query: 78   -------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVGLS 114
                               GTGFS+  L   ++ L+  +I +P++ +R+ D+I PDV  S
Sbjct: 1054 YLLACYDENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLINQPRNQFRFSDSIKPDVWFS 1113

[Close]

BLAST of Clc02G22820 vs. ExPASy TrEMBL
Match: A0A6J1JDM0 (DNA ligase OS=Cucurbita maxima OX=3661 GN=LOC111483595 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.0e-43
Identity = 94/118 (79.66%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT    
Sbjct: 607 QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYG 666

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
Sbjct: 667 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 724

[Close]

BLAST of Clc02G22820 vs. ExPASy TrEMBL
Match: A0A6J1FU87 (DNA ligase OS=Cucurbita moschata OX=3662 GN=LOC111448471 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.0e-43
Identity = 94/118 (79.66%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT    
Sbjct: 607 QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYG 666

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
Sbjct: 667 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 724

[Close]

BLAST of Clc02G22820 vs. ExPASy TrEMBL
Match: A0A0A0KGJ2 (DNA ligase OS=Cucumis sativus OX=3659 GN=Csa_6G148180 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 92/118 (77.97%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRS NWLKLKKDYID+IGDSLDLVPIAAFHGRGKRT    
Sbjct: 604 QSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYG 663

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV
Sbjct: 664 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 721

[Close]

BLAST of Clc02G22820 vs. ExPASy TrEMBL
Match: A0A7J6FCU3 (DNA ligase OS=Cannabis sativa OX=3483 GN=G4B88_028299 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 7.4e-41
Identity = 82/92 (89.13%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 19  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGTGFSE 78
           CEGLIIKT+N+DATYEPS+RSLNWLKLKKDY+D+IGDSLDLVPIAAFHGRGKRTGTGFSE
Sbjct: 600 CEGLIIKTMNKDATYEPSRRSLNWLKLKKDYLDSIGDSLDLVPIAAFHGRGKRTGTGFSE 659

Query: 79  AMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
           AMLEERSASLRSKVI  PKSYYRY ++INPDV
Sbjct: 660 AMLEERSASLRSKVIERPKSYYRYAESINPDV 691

[Close]

BLAST of Clc02G22820 vs. ExPASy TrEMBL
Match: A0A5D3DKM3 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1754G00060 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.7e-40
Identity = 90/118 (76.27%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 17  QSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT---- 76
           QSCEGLIIKTLNRDATYEPSKRS NWLKLKKDYID+IGDSLDLVPIAAFHGRGKRT    
Sbjct: 604 QSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYG 663

Query: 77  --------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                               GTGFSEAMLEERSASLRSKVIP+PKSYYRYGD INPDV
Sbjct: 664 AFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPQPKSYYRYGDAINPDV 721

[Close]

BLAST of Clc02G22820 vs. TAIR 10
Match: AT1G08130.1 (DNA ligase 1 )

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-36
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 19  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------ 78
           CEGLIIKTL+ DATYEP+KRS NWLKLKKDY+D+IGDS+DLVPIAAFHGRGKRT      
Sbjct: 595 CEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAF 654

Query: 79  ------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDV 111
                             GTGFS+AML+ERS+SLRS+VI  PK YYR GD++NPDV
Sbjct: 655 LLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDV 710

[Close]

BLAST of Clc02G22820 vs. TAIR 10
Match: AT1G49250.1 (ATP-dependent DNA ligase )

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 67/126 (53.17%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 19  CEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRT------ 78
           CEGL+IK+L  +ATYEP+KRS NWLKLKKDY+DNIGDS+DLVPIA FHGRGKRT      
Sbjct: 462 CEGLMIKSLYSNATYEPAKRSNNWLKLKKDYMDNIGDSVDLVPIATFHGRGKRTGFFGAY 521

Query: 79  ------------------GTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVGLSL 121
                             GT FS+  L++ S+SL SKVI  PK YY+  + +NPDV L  
Sbjct: 522 LLACYDVDKEEFQSICKIGTEFSDVELQDLSSSLCSKVIATPKQYYQVDNDLNPDVWLEP 581

[Close]

BLAST of Clc02G22820 vs. TAIR 10
Match: AT1G66730.1 (DNA LIGASE 6 )

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 18   SCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTG---- 77
            SCEG+++K+L+ +A Y P+KRS +WLK+K+DY+D +GD+LDLVPI A++G G++ G    
Sbjct: 1205 SCEGIMVKSLDVNAGYCPTKRSDSWLKVKRDYVDGLGDTLDLVPIGAWYGNGRKAGWYSP 1264

Query: 78   --------------------TGFSEAM-LEERSASLRSKVIPEPKSYYRYGDTINPDVGL 114
                                +GFS+A  +E +      K++ +   YYR G+T  PD+  
Sbjct: 1265 FLMACFNPETEEFQSVCRVMSGFSDAFYIEMKEFYSEDKILAKKPPYYRTGET--PDMWF 1323

The following BLAST results are available for this feature:

BLAST of Clc02G22820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985559.1	1.6e-42	79.66	DNA ligase 1 [Cucurbita maxima]	[more]
XP_023512549.1	1.6e-42	79.66	DNA ligase 1 [Cucurbita pepo subsp. pepo]	[more]
KAG6570819.1	1.6e-42	79.66	DNA ligase 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7010661.1	1.6e-42	79.66	DNA ligase 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022943872.1	1.6e-42	79.66	DNA ligase 1 [Cucurbita moschata]	[more]

BLAST of Clc02G22820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42572	2.6e-35	64.66	DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2	[more]
P18858	2.3e-23	41.96	DNA ligase 1 OS=Homo sapiens OX=9606 GN=LIG1 PE=1 SV=1	[more]
P37913	2.3e-23	40.51	DNA ligase 1 OS=Mus musculus OX=10090 GN=Lig1 PE=1 SV=2	[more]
P51892	8.8e-23	40.56	DNA ligase 1 OS=Xenopus laevis OX=8355 GN=lig1 PE=2 SV=1	[more]
Q869E1	3.3e-22	42.50	DNA ligase 1 OS=Dictyostelium discoideum OX=44689 GN=lig1 PE=3 SV=1	[more]

BLAST of Clc02G22820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDM0	8.0e-43	79.66	DNA ligase OS=Cucurbita maxima OX=3661 GN=LOC111483595 PE=3 SV=1	[more]
A0A6J1FU87	8.0e-43	79.66	DNA ligase OS=Cucurbita moschata OX=3662 GN=LOC111448471 PE=3 SV=1	[more]
A0A0A0KGJ2	2.0e-41	77.97	DNA ligase OS=Cucumis sativus OX=3659 GN=Csa_6G148180 PE=3 SV=1	[more]
A0A7J6FCU3	7.4e-41	89.13	DNA ligase OS=Cannabis sativa OX=3483 GN=G4B88_028299 PE=3 SV=1	[more]
A0A5D3DKM3	1.7e-40	76.27	DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1754G00060 PE...	[more]

BLAST of Clc02G22820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08130.1	1.9e-36	64.66	DNA ligase 1	[more]
AT1G49250.1	1.3e-29	53.17	ATP-dependent DNA ligase	[more]
AT1G66730.1	1.9e-17	37.19	DNA LIGASE 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.1490.70		coord: 6..54 e-value: 2.4E-15 score: 58.8
None	No IPR available	PANTHER	PTHR45674	DNA LIGASE 1/3 FAMILY MEMBER	coord: 17..118
None	No IPR available	PANTHER	PTHR45674:SF4	DNA LIGASE 1	coord: 17..118
None	No IPR available	SUPERFAMILY	56091	DNA ligase/mRNA capping enzyme, catalytic domain	coord: 17..52
IPR016059	DNA ligase, ATP-dependent, conserved site	PROSITE	PS00333	DNA_LIGASE_A2	coord: 20..46
IPR012310	DNA ligase, ATP-dependent, central	PROSITE	PS50160	DNA_LIGASE_A3	coord: 17..73 score: 21.508249
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 54..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G22820.1	Clc02G22820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006266	DNA ligation
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006273	lagging strand elongation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003910	DNA ligase (ATP) activity
molecular_function	GO:0003909	DNA ligase activity