Clc01G18600 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G18600
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionmerozoite surface antigen 2-like
LocationClcChr01: 31115146 .. 31116467 (-)
RNA-Seq ExpressionClc01G18600
SyntenyClc01G18600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGGATCGGTGAAGTTTTTAGACTTCTTACATAAACTGCATTTGTTAATTATCAAGCTCTTGAAACTGTTATGAAGCTGTTTTAGGCTGTGATTGAAGTTTTTGTTGATTCTATTGAAGTTTTTGTTGATTCTCTCAACGATTTGCATCAATGTCATTCGAAACAAGGCTTCCTATTGATCATGTCTTAGTTCCTCACTGAATTATGTTTCACTTGTGTGTCTTCTTTCTCGTTTGTACTGTAAAAATCGAAATTGTTCCTCAATACAATTGAAGAAAATACCGAAAGATTTGAACTCCGAATATCAAGTTGATGAGTGTAAACATTTTCCTGACAAATATAAGCTAATGGATGTACGAAAAATTGAAAATTCTTATTCATCTCTAATCCGATATACAAAGAATTCATTTCCAAAACAATAAAAAGGGGGAAAATATGATCAACAGAAGAACAAATCCTCAAAATAATGATGACTATCAAAATTACAATAACAACGATTAAAATAATAATAATAATAACGATCAAATTTTGTAGAGGCAGTATGGGTGAGGGATTAAAAAGGCAAAAGAATTCTACCAGTCATCACTCCCGTCCACCTTCGAATCTAGATCTCTTACTTGACCCAAGGATCAATGTCTACGCTAAAATCACTGCGAACAGAGTTCCAGCAACAGCGATTCCGAATGTCGCCGCTCCACCGATGTGTGACGCTGCTCCAGCTGGGTTGTCGGCCGCCGGTGCTTGGGGTGCAGGTGAAGGCACCTCGATTCCGGTGGGTGAAGGAGGAGAAGCAATGGGTGGAACTACAGGACCACCGGTGGGAGATCCCGAAGGAGTAGGACTGGAGCTTGGAGCTGGGGTAGGAGCAGTAGTTGCCGGAGCAGGGGCAGGAGCTGCTGGGGCCGGTGACGGAGCTCCAGGAGCGGGTGAGGGGGACGCGGGAGCCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTCGGAGATGGAGGGAGAGCCACCGGAGAAGGCGCCGGAGTGGCTGGTGGCGGAGTTAGAGGCTGTGAAGAACCCGGTGCCGGCGCTGGAGCCTGAGCCATACATAACCTCGTCAACAAAGCAAAAATCACAACGAATCGAACCCCCGAGAATCCCATCGTCTTTATCGGAAACAAAAAGGAAAAAAGATTTCTTATCAAAACAGAGTATCTCAGAGAAAGATAGTGGAAGTGGAGGAAGCCAAACGACAGCGTTTTTCAAATTCTCTCACAAAGCTCCCTTTGTTTGTTTTGCTTTGTACCCCAATAGCCGGTGGTAAGTCCATATATATAGCCTCTCTCC

mRNA sequence

CAGGGATCGGTGAAGTTTTTAGACTTCTTACATAAACTGCATTTGTTAATTATCAAGCTCTTGAAACTGTTATGAAGCTGTTTTAGGCTGTGATTGAAGTTTTTGTTGATTCTATTGAAGTTTTTGTTGATTCTCTCAACGATTTGCATCAATGTCATTCGAAACAAGGCTTCCTATTGATCATGTCTTAGTTCCTCACTGAATTATGTTTCACTTGTGTGTCTTCTTTCTCGTTTGTACTGTAAAAATCGAAATTGTTCCTCAATACAATTGAAGAAAATACCGAAAGATTTGAACTCCGAATATCAAGTTGATGAGTGTAAACATTTTCCTGACAAATATAAGCTAATGGATGTACGAAAAATTGAAAATTCTTATTCATCTCTAATCCGATATACAAAGAATTCATTTCCAAAACAATAAAAAGGGGGAAAATATGATCAACAGAAGAACAAATCCTCAAAATAATGATGACTATCAAAATTACAATAACAACGATTAAAATAATAATAATAATAACGATCAAATTTTGTAGAGGCAGTATGGGTGAGGGATTAAAAAGGCAAAAGAATTCTACCAGTCATCACTCCCGTCCACCTTCGAATCTAGATCTCTTACTTGACCCAAGGATCAATGTCTACGCTAAAATCACTGCGAACAGAGTTCCAGCAACAGCGATTCCGAATGTCGCCGCTCCACCGATGTGTGACGCTGCTCCAGCTGGGTTGTCGGCCGCCGGTGCTTGGGGTGCAGGTGAAGGCACCTCGATTCCGGTGGGTGAAGGAGGAGAAGCAATGGGTGGAACTACAGGACCACCGGTGGGAGATCCCGAAGGAGTAGGACTGGAGCTTGGAGCTGGGGTAGGAGCAGTAGTTGCCGGAGCAGGGGCAGGAGCTGCTGGGGCCGGTGACGGAGCTCCAGGAGCGGGTGAGGGGGACGCGGGAGCCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTCGGAGATGGAGGGAGAGCCACCGGAGAAGGCGCCGGAGTGGCTGGTGGCGGAGTTAGAGGCTGTGAAGAACCCGGTGCCGGCGCTGGAGCCTGAGCCATACATAACCTCGTCAACAAAGCAAAAATCACAACGAATCGAACCCCCGAGAATCCCATCGTCTTTATCGGAAACAAAAAGGAAAAAAGATTTCTTATCAAAACAGAGTATCTCAGAGAAAGATAGTGGAAGTGGAGGAAGCCAAACGACAGCGTTTTTCAAATTCTCTCACAAAGCTCCCTTTGTTTGTTTTGCTTTGTACCCCAATAGCCGGTGGTAAGTCCATATATATAGCCTCTCTCC

Coding sequence (CDS)

ATGATGACTATCAAAATTACAATAACAACGATTAAAATAATAATAATAATAACGATCAAATTTTGTAGAGGCAGTATGGGTGAGGGATTAAAAAGGCAAAAGAATTCTACCAGTCATCACTCCCGTCCACCTTCGAATCTAGATCTCTTACTTGACCCAAGGATCAATGTCTACGCTAAAATCACTGCGAACAGAGTTCCAGCAACAGCGATTCCGAATGTCGCCGCTCCACCGATGTGTGACGCTGCTCCAGCTGGGTTGTCGGCCGCCGGTGCTTGGGGTGCAGGTGAAGGCACCTCGATTCCGGTGGGTGAAGGAGGAGAAGCAATGGGTGGAACTACAGGACCACCGGTGGGAGATCCCGAAGGAGTAGGACTGGAGCTTGGAGCTGGGGTAGGAGCAGTAGTTGCCGGAGCAGGGGCAGGAGCTGCTGGGGCCGGTGACGGAGCTCCAGGAGCGGGTGAGGGGGACGCGGGAGCCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTCGGAGATGGAGGGAGAGCCACCGGAGAAGGCGCCGGAGTGGCTGGTGGCGGAGTTAGAGGCTGTGAAGAACCCGGTGCCGGCGCTGGAGCCTGA

Protein sequence

MMTIKITITTIKIIIIITIKFCRGSMGEGLKRQKNSTSHHSRPPSNLDLLLDPRINVYAKITANRVPATAIPNVAAPPMCDAAPAGLSAAGAWGAGEGTSIPVGEGGEAMGGTTGPPVGDPEGVGLELGAGVGAVVAGAGAGAAGAGDGAPGAGEGDAGAGEGDGALFGVGVGDGGRATGEGAGVAGGGVRGCEEPGAGAGA
Homology
BLAST of Clc01G18600 vs. NCBI nr
Match: XP_011658485.2 (jacalin-related lectin 34-like [Cucumis sativus] >KAE8647550.1 hypothetical protein Csa_004127 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-32
Identity = 99/125 (79.20%), Postives = 103/125 (82.40%), Query Frame = 0

Query: 79  MCDAAPAGLSAAGAWGAGEGTSIPVGEGGEAMGGTTGPPVGDPEGVGLELGAGVGAVV-A 138
           MCD APAGLSAAG WGAGEGTSIPVGEGGEAMGG TGP    PEGVG+E+G GVG  +  
Sbjct: 1   MCDPAPAGLSAAGPWGAGEGTSIPVGEGGEAMGGRTGP----PEGVGVEIGVGVGVEIGV 60

Query: 139 GAGAGAAGAGDGAPGAGEGDAGAGEGDGALFGVGVGDGGRATGEGAGVAGGGVRGCEEPG 198
           G GA  AGAGD A GAGEGD G GEGDGALFGVGVGDGG+ TGEGAGVA GGVRGC EPG
Sbjct: 61  GVGAIGAGAGDAASGAGEGDTGVGEGDGALFGVGVGDGGKTTGEGAGVADGGVRGCGEPG 120

Query: 199 AGAGA 203
           AGAGA
Sbjct: 121 AGAGA 121

BLAST of Clc01G18600 vs. NCBI nr
Match: XP_022132682.1 (merozoite surface antigen 2-like [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-26
Identity = 96/147 (65.31%), Postives = 103/147 (70.07%), Query Frame = 0

Query: 55  INVYAKITANRVPATAIPNVAAPPMCDAAPAGLSAAGAWGAGEGTS--IPVGEGGEAMGG 114
           + +YA  TANRVPA AIPNVAA P+CDAAPAGLSA G WGAGEGT    P GEGGE   G
Sbjct: 3   VEIYANTTANRVPARAIPNVAARPICDAAPAGLSAGGGWGAGEGTGTPFPAGEGGEGKAG 62

Query: 115 TTGPPVGDPEGVGLELGAGVGAVVAGAGAGAAGAGDGAPGAGEGDAGAGEGDGALFGVGV 174
            TG P GDP G G  +G GVG V  GAG GAAG G+GA GAGEGDAG G GDGALFG GV
Sbjct: 63  -TGAPAGDPLGEG--IGVGVG-VEVGAGEGAAGVGEGASGAGEGDAGVGAGDGALFGDGV 122

Query: 175 GDGGRATGEGAGVAGGGVRGCEEPGAG 200
           G GG+ TGEGAG       GC+  G G
Sbjct: 123 GAGGKKTGEGAG-------GCDGAGPG 138

BLAST of Clc01G18600 vs. NCBI nr
Match: KAG7034220.1 (hypothetical protein SDJN02_03947, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-22
Identity = 92/132 (69.70%), Postives = 98/132 (74.24%), Query Frame = 0

Query: 79  MCDAAPAGLSAAGAWGAGEGTSIPVGEGGEAMGGTTGPPVGDPEGVGLELGAGVGAVVA- 138
           MCDAAPAGLSAAGA G GEG S+ +GEGGEA+GGTTG P GDPEG+G ELGAGVGA+VA 
Sbjct: 1   MCDAAPAGLSAAGASGIGEGPSV-LGEGGEAIGGTTGAPAGDPEGIGRELGAGVGALVAG 60

Query: 139 --------GAGAGAAGAGDGAPGAGEGDAGAGEGDGALFGVGVGDGGRATGEGAGVAGGG 198
                   GAGA A GAGDGA  AGEGDA  G+GDGAL G   GDGG ATGEGAGVAG G
Sbjct: 61  DGVGALVSGAGACADGAGDGASVAGEGDAEIGDGDGALIGDRDGDGGNATGEGAGVAGVG 120

Query: 199 VRGCEEPGAGAG 202
             G  E  AGAG
Sbjct: 121 GIGFGESCAGAG 131

BLAST of Clc01G18600 vs. NCBI nr
Match: KAG7026860.1 (hypothetical protein SDJN02_10867, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-12
Identity = 71/137 (51.82%), Postives = 76/137 (55.47%), Query Frame = 0

Query: 66  VPATAIPNVAAPPMCDAAPAGLSAAGAWGAGEGTSIPVGEGGEAMGGTTGPPVGDPEGVG 125
           +PATAIPNV APP+CDAAP GLSA G  GA         EGGEA  GTTGPP GDPEGV 
Sbjct: 39  LPATAIPNVPAPPICDAAPVGLSAGGPSGA--------DEGGEATRGTTGPPAGDPEGV- 98

Query: 126 LELGAGVGAVVAGAGAGAAGAGDGAPGAGEGDAGAGEGDGALFGVGVGDGGRATGEGAGV 185
             +GAGVGA+V+GAG G AG                                   EGAGV
Sbjct: 99  --IGAGVGALVSGAGVGDAG---------------------------------VREGAGV 131

Query: 186 AGGGVRGCEEPGAGAGA 203
           AG G RGCE P AGAGA
Sbjct: 159 AGAGGRGCEGPRAGAGA 131

BLAST of Clc01G18600 vs. ExPASy TrEMBL
Match: A0A6J1BUI4 (merozoite surface antigen 2-like OS=Momordica charantia OX=3673 GN=LOC111005482 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.8e-27
Identity = 96/147 (65.31%), Postives = 103/147 (70.07%), Query Frame = 0

Query: 55  INVYAKITANRVPATAIPNVAAPPMCDAAPAGLSAAGAWGAGEGTS--IPVGEGGEAMGG 114
           + +YA  TANRVPA AIPNVAA P+CDAAPAGLSA G WGAGEGT    P GEGGE   G
Sbjct: 3   VEIYANTTANRVPARAIPNVAARPICDAAPAGLSAGGGWGAGEGTGTPFPAGEGGEGKAG 62

Query: 115 TTGPPVGDPEGVGLELGAGVGAVVAGAGAGAAGAGDGAPGAGEGDAGAGEGDGALFGVGV 174
            TG P GDP G G  +G GVG V  GAG GAAG G+GA GAGEGDAG G GDGALFG GV
Sbjct: 63  -TGAPAGDPLGEG--IGVGVG-VEVGAGEGAAGVGEGASGAGEGDAGVGAGDGALFGDGV 122

Query: 175 GDGGRATGEGAGVAGGGVRGCEEPGAG 200
           G GG+ TGEGAG       GC+  G G
Sbjct: 123 GAGGKKTGEGAG-------GCDGAGPG 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011658485.21.9e-3279.20jacalin-related lectin 34-like [Cucumis sativus] >KAE8647550.1 hypothetical prot... [more]
XP_022132682.11.2e-2665.31merozoite surface antigen 2-like [Momordica charantia][more]
KAG7034220.12.3e-2269.70hypothetical protein SDJN02_03947, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7026860.11.7e-1251.82hypothetical protein SDJN02_10867, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BUI45.8e-2765.31merozoite surface antigen 2-like OS=Momordica charantia OX=3673 GN=LOC111005482 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G18600.1Clc01G18600.1mRNA