Clc01G17070 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAGAACCTCCCTCGATCTTTCTCATTTTATATCCCACGTTTCATTGTCTACAACCTCCCCGCTCCCTATAAATACCTCCCCCAAACTTGCCCCATTAAATTCACACAAATTCCTCCCTATCATCTCTCAACCCTAACTTTAATTCGCTTTATTTATTACTATGAGGAGCATGGGGAAGATTTTAATCACCTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGAAGATGGACGGTCCAGATCAAGCTCGTTCGTATGCAGCCCAAGTGTAGATTAAATAAAATTTTTGTAGGGTTGAAAGTTGATTTAATACTCTTCTGAATTTTTTATACTTTATTTATTTTGTTCTTTTGTCGAGTTTGTATCATTACTGTTTATGGGTTTGGTTAAACCATTGCAAAAACG CAAGAACCTCCCTCGATCTTTCTCATTTTATATCCCACGTTTCATTGTCTACAACCTCCCCGCTCCCTATAAATACCTCCCCCAAACTTGCCCCATTAAATTCACACAAATTCCTCCCTATCATCTCTCAACCCTAACTTTAATTCGCTTTATTTATTACTATGAGGAGCATGGGGAAGATTTTAATCACCTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGAAGATGGACGGTCCAGATCAAGCTCGTTCGTATGCAGCCCAAGTGTAGATTAAATAAAATTTTTGTAGGGTTGAAAGTTGATTTAATACTCTTCTGAATTTTTTATACTTTATTTATTTTGTTCTTTTGTCGAGTTTGTATCATTACTGTTTATGGGTTTGGTTAAACCATTGCAAAAACG ATGAGGAGCATGGGGAAGATTTTAATCACCTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGA MRSMGKILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSHP Homology
BLAST of Clc01G17070 vs. NCBI nr
Match: KAE8647505.1 (hypothetical protein Csa_003084 [Cucumis sativus]) HSP 1 Score: 146.0 bits (367), Expect = 1.7e-31 Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0
BLAST of Clc01G17070 vs. NCBI nr
Match: TYK12857.1 (hypothetical protein E5676_scaffold255G004490 [Cucumis melo var. makuwa]) HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31 Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of Clc01G17070 vs. NCBI nr
Match: KAG6595008.1 (PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027036.1 hypothetical protein SDJN02_11045, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 131.7 bits (330), Expect = 3.3e-27 Identity = 73/100 (73.00%), Postives = 82/100 (82.00%), Query Frame = 0
BLAST of Clc01G17070 vs. NCBI nr
Match: XP_010652763.1 (PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera] >XP_034691902.1 PAMP-induced secreted peptide 2 [Vitis riparia] >RVW57244.1 hypothetical protein CK203_099687 [Vitis vinifera] >CBI33765.3 unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12 Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of Clc01G17070 vs. NCBI nr
Match: XP_007155883.1 (hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris] >ESW27877.1 hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris]) HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11 Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 0
BLAST of Clc01G17070 vs. ExPASy Swiss-Prot
Match: F4JRC5 (PAMP-induced secreted peptide 2 OS=Arabidopsis thaliana OX=3702 GN=PIP2 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.0e-07 Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 0
BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: A0A0A0KIE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491710 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 8.2e-32 Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0
BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: A0A5D3CLN9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004490 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31 Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: D7TTE3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0129g01010 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 6.6e-13 Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: A0A438FBB4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_099687 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 6.6e-13 Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: A5AV37 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011346 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 5.5e-12 Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0
BLAST of Clc01G17070 vs. TAIR 10
Match: AT2G23270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37290.1); Has 36 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 0
BLAST of Clc01G17070 vs. TAIR 10
Match: AT4G37290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon, hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08 Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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