Clc01G17070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G17070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	PAMP-induced secreted peptide 2
Location	ClcChr01: 29820214 .. 29820845 (-)
RNA-Seq Expression	Clc01G17070
Synteny	Clc01G17070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAACCTCCCTCGATCTTTCTCATTTTATATCCCACGTTTCATTGTCTACAACCTCCCCGCTCCCTATAAATACCTCCCCCAAACTTGCCCCATTAAATTCACACAAATTCCTCCCTATCATCTCTCAACCCTAACTTTAATTCGCTTTATTTATTACTATGAGGAGCATGGGGAAGATTTTAATCACCTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGAAGATGGACGGTCCAGATCAAGCTCGTTCGTATGCAGCCCAAGTGTAGATTAAATAAAATTTTTGTAGGGTTGAAAGTTGATTTAATACTCTTCTGAATTTTTTATACTTTATTTATTTTGTTCTTTTGTCGAGTTTGTATCATTACTGTTTATGGGTTTGGTTAAACCATTGCAAAAACG

mRNA sequence

CAAGAACCTCCCTCGATCTTTCTCATTTTATATCCCACGTTTCATTGTCTACAACCTCCCCGCTCCCTATAAATACCTCCCCCAAACTTGCCCCATTAAATTCACACAAATTCCTCCCTATCATCTCTCAACCCTAACTTTAATTCGCTTTATTTATTACTATGAGGAGCATGGGGAAGATTTTAATCACCTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGAAGATGGACGGTCCAGATCAAGCTCGTTCGTATGCAGCCCAAGTGTAGATTAAATAAAATTTTTGTAGGGTTGAAAGTTGATTTAATACTCTTCTGAATTTTTTATACTTTATTTATTTTGTTCTTTTGTCGAGTTTGTATCATTACTGTTTATGGGTTTGGTTAAACCATTGCAAAAACG

Coding sequence (CDS)

ATGAGGAGCATGGGGAAGATTTTAATCACCTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGA

Protein sequence

MRSMGKILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSHP

Homology

[Close]

BLAST of Clc01G17070 vs. NCBI nr
Match: KAE8647505.1 (hypothetical protein Csa_003084 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.7e-31
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1   MRSMGKILITFILVVALLGNGGL----EGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQ 60
           MRS+  I I FILV ALLGNGGL    + RPL+LM  GSGSAA IA+DFFEGLSLGAIKQ
Sbjct: 7   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 66

Query: 61  SGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSH 96
           SGPSAGGDGHKFVNYDT GGIKDSGP PG GH H+TSSH
Sbjct: 67  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 105

[Close]

BLAST of Clc01G17070 vs. NCBI nr
Match: TYK12857.1 (hypothetical protein E5676_scaffold255G004490 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 4  MGKILITFILVVALLGNGGL----EGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGP 63
          M KI I  ILVVALL NGGL    E RPL LM  GSGSAAAIA+DFFEGLSLGAIKQSGP
Sbjct: 1  MSKIFIGLILVVALLDNGGLVIVTEARPLGLM--GSGSAAAIAEDFFEGLSLGAIKQSGP 60

Query: 64 SAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSH 96
          SAGGDGHKFVNYDTFGG+KDSGPTPG GHSHVTSSH
Sbjct: 61 SAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 94

[Close]

BLAST of Clc01G17070 vs. NCBI nr
Match: KAG6595008.1 (PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027036.1 hypothetical protein SDJN02_11045, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 3.3e-27
Identity = 73/100 (73.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1  MRSMGKILITFILVVALL-GNGGL---EGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQ 60
          MR++GK+LI  ILV ALL GNGGL   E RPL+ MAS     AAIA+DFFEGLSLGAIKQ
Sbjct: 1  MRNVGKLLIGLILVAALLAGNGGLVATEARPLNAMAS-----AAIAEDFFEGLSLGAIKQ 60

Query: 61 SGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSHP 97
          SGPS GGDGHKFVN+DT GGIK+SGP+PG GHSH+TSS P
Sbjct: 61 SGPSPGGDGHKFVNFDTLGGIKESGPSPGDGHSHITSSRP 95

[Close]

BLAST of Clc01G17070 vs. NCBI nr
Match: XP_010652763.1 (PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera] >XP_034691902.1 PAMP-induced secreted peptide 2 [Vitis riparia] >RVW57244.1 hypothetical protein CK203_099687 [Vitis vinifera] >CBI33765.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 9  ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKF 68
          ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS  G+GHKF
Sbjct: 8  VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSP-GNGHKF 67

Query: 69 VNYDTFGGIKDSGPTPGAGHSHV 92
           N  T GGIKDSGP+PG GH +V
Sbjct: 68 TNAGTLGGIKDSGPSPGEGHKYV 89

[Close]

BLAST of Clc01G17070 vs. NCBI nr
Match: XP_007155883.1 (hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris] >ESW27877.1 hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris])

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 6  KILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDG 65
          +  +  +L+V   G  GLE RPLS+  +G G       DFF+ LSLGAIK+SGPS GG G
Sbjct: 8  RAFVVLVLLVMSTGLMGLEARPLSISGTGEGVEVV---DFFDWLSLGAIKESGPSPGGKG 67

Query: 66 HKFVNYDTFGGIKDSGPTPGA-GHSHVTS 94
          H+F N +T GGIKDSGP+ G  GH    S
Sbjct: 68 HRFTNSNTLGGIKDSGPSSGGEGHKFTNS 93

[Close]

BLAST of Clc01G17070 vs. ExPASy Swiss-Prot
Match: F4JRC5 (PAMP-induced secreted peptide 2 OS=Arabidopsis thaliana OX=3702 GN=PIP2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-07
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 4  MGKILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGG 63
          M K +++ IL   L+G+  +E RPL L  +     A++    F+GLSLG+IK SGPS  G
Sbjct: 3  MNKNVLSSILFFMLIGSVLVESRPLGLTKTEEKFVASL----FDGLSLGSIKDSGPSP-G 62

Query: 64 DGHKFVN-YDTFGGIKDSGPTP-GAGH 89
          +GHK V+  DTF  +K SGP+P G GH
Sbjct: 63 EGHKVVDRKDTFRFVKHSGPSPSGPGH 84

[Close]

BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: A0A0A0KIE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491710 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.2e-32
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MRSMGKILITFILVVALLGNGGL----EGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQ 60
          MRS+  I I FILV ALLGNGGL    + RPL+LM  GSGSAA IA+DFFEGLSLGAIKQ
Sbjct: 1  MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61 SGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSH 96
          SGPSAGGDGHKFVNYDT GGIKDSGP PG GH H+TSSH
Sbjct: 61 SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 99

[Close]

BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: A0A5D3CLN9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004490 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 4  MGKILITFILVVALLGNGGL----EGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGP 63
          M KI I  ILVVALL NGGL    E RPL LM  GSGSAAAIA+DFFEGLSLGAIKQSGP
Sbjct: 1  MSKIFIGLILVVALLDNGGLVIVTEARPLGLM--GSGSAAAIAEDFFEGLSLGAIKQSGP 60

Query: 64 SAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSH 96
          SAGGDGHKFVNYDTFGG+KDSGPTPG GHSHVTSSH
Sbjct: 61 SAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 94

[Close]

BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: D7TTE3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0129g01010 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.6e-13
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 9  ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKF 68
          ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS  G+GHKF
Sbjct: 8  VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSP-GNGHKF 67

Query: 69 VNYDTFGGIKDSGPTPGAGHSHV 92
           N  T GGIKDSGP+PG GH +V
Sbjct: 68 TNAGTLGGIKDSGPSPGEGHKYV 89

[Close]

BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: A0A438FBB4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_099687 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.6e-13
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 9  ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKF 68
          ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS  G+GHKF
Sbjct: 8  VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSP-GNGHKF 67

Query: 69 VNYDTFGGIKDSGPTPGAGHSHV 92
           N  T GGIKDSGP+PG GH +V
Sbjct: 68 TNAGTLGGIKDSGPSPGEGHKYV 89

[Close]

BLAST of Clc01G17070 vs. ExPASy TrEMBL
Match: A5AV37 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011346 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.5e-12
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 9  ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKF 68
          ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS  G+GHKF
Sbjct: 8  VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSP-GNGHKF 67

Query: 69 VNYDTFGGIKDSGPTPGAGH 89
           N  T GGIKDSGP+PG GH
Sbjct: 68 TNAGTLGGIKDSGPSPGNGH 86

[Close]

BLAST of Clc01G17070 vs. TAIR 10
Match: AT2G23270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37290.1); Has 36 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 4  MGKILI-TFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAG 63
          M K+++ +F+  + +  N  +E RPL L  +     A     FF+GLSLGAIK+SGPS+G
Sbjct: 3  MNKVVLGSFLFFMLVSSNFVVEARPLGLTKAEENLVA----KFFDGLSLGAIKESGPSSG 62

Query: 64 GDGHKFVN-YDTFGGIKDSGP-TPGAGH 89
          G+GH+FV+  +T    K SGP T G GH
Sbjct: 63 GEGHRFVDRTETLEYGKHSGPSTSGPGH 86

[Close]

BLAST of Clc01G17070 vs. TAIR 10
Match: AT4G37290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon, hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 4  MGKILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGG 63
          M K +++ IL   L+G+  +E RPL L  +     A++    F+GLSLG+IK SGPS  G
Sbjct: 3  MNKNVLSSILFFMLIGSVLVESRPLGLTKTEEKFVASL----FDGLSLGSIKDSGPSP-G 62

Query: 64 DGHKFVN-YDTFGGIKDSGPTP-GAGH 89
          +GHK V+  DTF  +K SGP+P G GH
Sbjct: 63 EGHKVVDRKDTFRFVKHSGPSPSGPGH 84

The following BLAST results are available for this feature:

BLAST of Clc01G17070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647505.1	1.7e-31	77.78	hypothetical protein Csa_003084 [Cucumis sativus]	[more]
TYK12857.1	2.9e-31	83.33	hypothetical protein E5676_scaffold255G004490 [Cucumis melo var. makuwa]	[more]
KAG6595008.1	3.3e-27	73.00	PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia]...	[more]
XP_010652763.1	1.4e-12	50.60	PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera] >XP_034691902.1...	[more]
XP_007155883.1	1.1e-11	50.56	hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris] >ESW27877.1 hypothet...	[more]

BLAST of Clc01G17070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JRC5	3.0e-07	45.98	PAMP-induced secreted peptide 2 OS=Arabidopsis thaliana OX=3702 GN=PIP2 PE=1 SV=...	[more]

BLAST of Clc01G17070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIE2	8.2e-32	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491710 PE=4 SV=1	[more]
A0A5D3CLN9	1.4e-31	83.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
D7TTE3	6.6e-13	50.60	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0129g01010 PE=4 SV=...	[more]
A0A438FBB4	6.6e-13	50.60	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_099687 PE=4 SV=1	[more]
A5AV37	5.5e-12	51.25	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011346 PE=4 SV=1	[more]

BLAST of Clc01G17070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23270.1	1.3e-08	44.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G37290.1	2.2e-08	45.98	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044700	PIP2/PIPL1	PANTHER	PTHR34663	OS06G0637400 PROTEIN	coord: 8..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G17070.1	Clc01G17070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045087	innate immune response
biological_process	GO:0050793	regulation of developmental process