Clc01G15780 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G15780
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	copper ion binding;cobalt ion binding;zinc ion binding
Location	ClcChr01: 28572047 .. 28576227 (-)
RNA-Seq Expression	Clc01G15780
Synteny	Clc01G15780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGCAGGGTCCACCGAAGCATTTCTAGCAGAGCTTCCCCTCCGCTTTCCCATAGACGCCTCCTTTCTCAAACCAGGGATCCCTCTTCATATAATCTGACTTCCAATCCTCAATCCATTATTCATCGAACCATCCGAACAAAGCCGCAATCTGAGCTCCCACCATGGCTCTCTCTTCTCGTCTCTTGTCCAAATCCAACCAGGTTCGCCCTTTTCCGCCCTGGATCGCCTCAGTATACCCTACTTTTCACTCTCTCTGATTCTTCATGTTTCATATCGTTTTTTGTTGCTGTGTTGATTTTTGTTCTTCCGTTTTCTATTCGGAACTGGAACTTGTTATTGCCGAATACTCTTATGGATCCTGAAAATGGTGAAAGCTTTGTCAATATCTCCCTCCCCGTAATTCGATTTTTAATTCTTGGCTTTTTATAATTTGTTGCTTTCTGATGGTTTCGGGATCTGGGATTTTAGGCTTTCTTTGGATGATGATGTAAAGTATGTAGGTTGTTGTGGATTTTTCTAACATTAGTGAGGCTTCGTTAAAGATTTTGAATGTTAGACGCATTGTTTGGAAATGGTAGTCTGTGCGTAGTGGGAAAGTGTTTTCCTAATTTATGTTGCCTAGAGGCGGGATGATCATTGAATCAGCTGCTTAACGTGGGTTTTTTTGCCCTTTCGTTGTTACAGGTGCTTGGCAGTCAAAGTATCTTACACCAGGGGCATGCTATTCCTGTTCGTCACTTTGCAAAAGAGGCTGCTCGGCCTGCTCTGAAGGGAGATGGTGAGGCAAAATACGCTCAATTAGTGAGAAAGTGAGAGAGAGAGAGATATGAAGTTTGGTTTATGTCTATCACACAGTTGTAGTTATGTCTTTAAGGAATCATGGATAAATTATGTAGAGAATTGCATCAGAAATATATATATATAAAGGCTATGAAGCGACATGAGTGAATTATCGACTTCTCTATGTGCAAATTTATCTTGAATTTTCTGTGATTTAATTAATAATGTTTTTTTTTTTTTTTTTTTCTCTGTGGGTGCCAAAGAAATGCTGAAGAACATATTTTTGGAAGTGAAAAAGAAGTTTGAGACAGCATTGGATGTTTTCCGAAAAGAGAAGATCACAATTGATCCAGATGATCCTGCTGCTGTAGCTCAATACGCTAAGGTCATGAAAATGGCAAGAGAGAAGTAAGTGTTTTTGCATGATTACCACATTTTCTAGTTAAATCCTCTACGGCTACTTGTGGGTTGAGCCCTATCATTCTCTGTGCAATTAACTGGTGCTGAGGTACCTGGGTCATTTTATCTTTCGAGTATATTAATCAAATACCCCTGCCTCAATTTATACTGACTAGCTCAAAAGTAATTAGCTAATGTACGATGAAAATTATGGGCTATTGAATTTTGTGCATCTACAGTCGTATCTATCACCACTTACTTACACATTAACGTTTGGCCTCTTCTGTTTTTAGTTACTTCTTTTGAGGGTCCTTGTCCTTCCTATACACTTTGCTTAATGAAATTCACTCTCTGCATTCTGTGCAATTTGTTTGGAACAATTTTGTTCTAGGTGAATTAAAGGATCATTGCTGGAGAGTGATAGCATGATAATCATAAATATTTCTCAGGGACTCACAATTTGGTGGTTATATATTTTTTTTGTGGCCGATAAACTGGAGATGAAGTTAAAATTAATCAATAATAGGAAACAAGTATTTCATGGCTTTGACTATTAATTAAGCGGGGAAACACTAATGTCATTTTTGTTCAATGTACAACATACCATTTTCTATGAGAATAGCTTCCGTGAACGGTATGTATAGAGTTCTTATTTATTGCTGCATTTTTCGAGGCATCCTCTTAGCTTTCATCTCTCCTCATTCAAATATAAAACTCTAAGTACAACCTATGAAACAGATGTTGTTCAAGTAAGGTCGTCATTAAAATATAAGTTGTTTTCACATAACATAGGACCATGTGTACATATTAGTACATGCTATTACAAAAATATGTGCATGTGAATATCTGTGAGTTACAATCTTAACCCTCTTGTTTCTTCCTCGCAGGGCAGATTTATTCTCAGAAGCACAGCGAATCAAATACACCATTCAGACAAGAACCCAAGACATCCCTGATGCCAGATCATACTTGCTGGCACTGAAGGATATCCGGATTAAGTATGTTCCTCTTTCACGAACTTGGATTCCTTGTCAACCTGAGCAACGCATGATCAACATTTCTCCCTTGGCATACTAACAGTTTATTTGATTTTCAAGGGTTCCAAGATTGACAAGACTTAGAAACTTGGACCAGTATTGATCAATGAAGGCTTGAAAAACCCCACCGAAAGTCCTTTTTTTAATTTTTTAAATTATTTTTTAAACACCATGGAAACTGAACAAATCTCCAAGTCCCCAGTACATGTTGTATAAAAGCTAAAACTTACTAATCACAATCTCAAAATGGCTTAGACCTTAGTTGTTTTTTTACCTGTCTTGTTCAATTTTCATGTCAACTTGTACAGACTTTTTGGCCTTCTAATATATTTTGGGGGTATGTATTGCCCATGCATCCATTCTTATTCCTGAAACCTGTGGCATTGATCTGATGCCTATTGCCAAGTGCATGAGTTTGTTGTTATATTGTACACTTGGTTTTGTGACTTTATTCTTATGTACCTTTTCAGGAGAGGTCTCACTGACGACCTTGGTGCAGAAGCTATGATGTTTGATGCTCTGGAAAAGGTTGAGAAAGAATTGAAGAAACCTCTCTTGAGGAATGACAAGAAAGGAATGTCTATTCTTATGGCTGAGTTTGACAAAATCAATCAAAAGTATGATTCTAACCTTTTATATTTTGTTTTACCAAAAAAGTTTAGTGATTTGTTAACAGACGTTTATGTTGCCATGCTCAACATAATCTAAGATTGCTATTGAAAACAAAATGTCTTGTCAGAAAATAGAAGCTTTTGCACTCCCATTTTGGATAAATGATGAGTTTATCAGGCTTCCATTTCTGAAATACTAGTGAAGAATGATAATCATTTTTATTAGTCGTGCATTTGCGTGTCTATTTGGTATCAGAGCTGGTCGCTTGCGTGTCTCTTTGGTATCAGAGCTGGTTGCACCTGGCAGTGAACCAAAACATGCCTTTTAGATTTCTTTTCTTTTATCAAAGAAAAAAAAGATGACCATTAGATTTCTCTATTTCTCTTAGACACTAGCTTTTACCAATCTAAATTTCTGACAGAGATTCAGGATAGTTGGTAGCTCCTACCTGCATACAGTTGAACAATCTTTCTTTAGGATATATAGAGTATTCTGAGTATATTGTTTAATTCTTTTTCCCCCCAATCAGGCTTGGGATTCGAAGGGAAGATCTGCCCAAGTACGAGGAGCAGTTGGAACTTAAAATTTCCAAGGCACAGTTGGAAGAGCTGAAGAAAGATGCTGTTGAGGCAATGGAAACTCAAAAGAAGCGGTATGTGGTTGATTATTATACTGCAAAAAACATAGTCTCAGTATCGATAGTCTAGTTAATCAGCAGACGTGTCTGTGCTGCTTTATATTGGTGTGCTGCCTTCTTTTCCGTAGTTTGGATGAAACAATCGCCATTGATCAGCCGGATAGATATATAGATAAGGGCTAAAAGAATTTTGTTCTCAAAAAGTATAACCTAGCTTGTATTTGGTTGGCATTACCGTAGATCTGTTGGCTCTCATCAAATCCTTATTGAAACTTATGCGACTTTTTCCCCCTTTGTTTTCAGTGAGGAGTTTAAAGACGAGGAAATGGTGGATGCGAAGTCGTTAGACGTGAGAAACTTCCTGTAGATTTTCAAATCATTTTTCTTTTGTTTTCTGGTTGAGAAGAATCTGTCAACAGAACTGAGTCGGCTGTCTATGAACACCGGGATACATCTCTTTAGCTTTAATAAGAAAAGCACCTCTGATATTGGGAGTGCATCATTTGGCTGATGTGTGTTCCCAACTTTTTATTTTATTTTATTTTTCTTTTTTTGTAATTCATCCTACTATGTTACATTGCCAGGTGATAACTGGATGGATATTGTCAAGAAATTTTCATTCCATCATTTGGCTGATGTGTTCCCAATTTTTTTGAGCTATGTTTGGTTTTAGCTTATTTGCTCTAATTAATTTCATGTAGCAAAGTGTC

mRNA sequence

ATGAGGAGCAGGGTCCACCGAAGCATTTCTAGCAGAGCTTCCCCTCCGCTTTCCCATAGACGCCTCCTTTCTCAAACCAGGGATCCCTCTTCATATAATCTGACTTCCAATCCTCAATCCATTATTCATCGAACCATCCGAACAAAGCCGCAATCTGAGCTCCCACCATGGCTCTCTCTTCTCGTCTCTTGTCCAAATCCAACCAGGTTCGCCCTTTTCCGCCCTGGATCGCCTCAGTATACCCTACTTTTCACTCTCTCTGATTCTTCATGTTTCATATCGTTTTTTGTTGCTGTGTTGATTTTTGTTCTTCCGTTTTCTATTCGGAACTGGAACTTGTTATTGCCGAATACTCTTATGGATCCTGAAAATGGTGAAAGCTTTGTCAATATCTCCCTCCCCGTGCTTGGCAGTCAAAGTATCTTACACCAGGGGCATGCTATTCCTGTTCGTCACTTTGCAAAAGAGGCTGCTCGGCCTGCTCTGAAGGGAGATGAAATGCTGAAGAACATATTTTTGGAAGTGAAAAAGAAGTTTGAGACAGCATTGGATGTTTTCCGAAAAGAGAAGATCACAATTGATCCAGATGATCCTGCTGCTGTAGCTCAATACGCTAAGGTCATGAAAATGGCAAGAGAGAAGGCAGATTTATTCTCAGAAGCACAGCGAATCAAATACACCATTCAGACAAGAACCCAAGACATCCCTGATGCCAGATCATACTTGCTGGCACTGAAGGATATCCGGATTAAGAGAGGTCTCACTGACGACCTTGGTGCAGAAGCTATGATGTTTGATGCTCTGGAAAAGGTTGAGAAAGAATTGAAGAAACCTCTCTTGAGGAATGACAAGAAAGGAATGTCTATTCTTATGGCTGAGTTTGACAAAATCAATCAAAAGCTTGGGATTCGAAGGGAAGATCTGCCCAAGTACGAGGAGCAGTTGGAACTTAAAATTTCCAAGGCACAGTTGGAAGAGCTGAAGAAAGATGCTGTTGAGGCAATGGAAACTCAAAAGAAGCGTGAGGAGTTTAAAGACGAGGAAATGGTGGATGCGAAGTCGTTAGACGTGAGAAACTTCCTGTAGATTTTCAAATCATTTTTCTTTTGTTTTCTGGTTGAGAAGAATCTGTCAACAGAACTGAGTCGGCTGTCTATGAACACCGGGATACATCTCTTTAGCTTTAATAAGAAAAGCACCTCTGATATTGGGAGTGCATCATTTGGCTGATGTGTGTTCCCAACTTTTTATTTTATTTTATTTTTCTTTTTTTGTAATTCATCCTACTATGTTACATTGCCAGGTGATAACTGGATGGATATTGTCAAGAAATTTTCATTCCATCATTTGGCTGATGTGTTCCCAATTTTTTTGAGCTATGTTTGGTTTTAGCTTATTTGCTCTAATTAATTTCATGTAGCAAAGTGTC

Coding sequence (CDS)

ATGAGGAGCAGGGTCCACCGAAGCATTTCTAGCAGAGCTTCCCCTCCGCTTTCCCATAGACGCCTCCTTTCTCAAACCAGGGATCCCTCTTCATATAATCTGACTTCCAATCCTCAATCCATTATTCATCGAACCATCCGAACAAAGCCGCAATCTGAGCTCCCACCATGGCTCTCTCTTCTCGTCTCTTGTCCAAATCCAACCAGGTTCGCCCTTTTCCGCCCTGGATCGCCTCAGTATACCCTACTTTTCACTCTCTCTGATTCTTCATGTTTCATATCGTTTTTTGTTGCTGTGTTGATTTTTGTTCTTCCGTTTTCTATTCGGAACTGGAACTTGTTATTGCCGAATACTCTTATGGATCCTGAAAATGGTGAAAGCTTTGTCAATATCTCCCTCCCCGTGCTTGGCAGTCAAAGTATCTTACACCAGGGGCATGCTATTCCTGTTCGTCACTTTGCAAAAGAGGCTGCTCGGCCTGCTCTGAAGGGAGATGAAATGCTGAAGAACATATTTTTGGAAGTGAAAAAGAAGTTTGAGACAGCATTGGATGTTTTCCGAAAAGAGAAGATCACAATTGATCCAGATGATCCTGCTGCTGTAGCTCAATACGCTAAGGTCATGAAAATGGCAAGAGAGAAGGCAGATTTATTCTCAGAAGCACAGCGAATCAAATACACCATTCAGACAAGAACCCAAGACATCCCTGATGCCAGATCATACTTGCTGGCACTGAAGGATATCCGGATTAAGAGAGGTCTCACTGACGACCTTGGTGCAGAAGCTATGATGTTTGATGCTCTGGAAAAGGTTGAGAAAGAATTGAAGAAACCTCTCTTGAGGAATGACAAGAAAGGAATGTCTATTCTTATGGCTGAGTTTGACAAAATCAATCAAAAGCTTGGGATTCGAAGGGAAGATCTGCCCAAGTACGAGGAGCAGTTGGAACTTAAAATTTCCAAGGCACAGTTGGAAGAGCTGAAGAAAGATGCTGTTGAGGCAATGGAAACTCAAAAGAAGCGTGAGGAGTTTAAAGACGAGGAAATGGTGGATGCGAAGTCGTTAGACGTGAGAAACTTCCTGTAG

Protein sequence

MRSRVHRSISSRASPPLSHRRLLSQTRDPSSYNLTSNPQSIIHRTIRTKPQSELPPWLSLLVSCPNPTRFALFRPGSPQYTLLFTLSDSSCFISFFVAVLIFVLPFSIRNWNLLLPNTLMDPENGESFVNISLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKITIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIKRGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKYEEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL

Homology

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BLAST of Clc01G15780 vs. NCBI nr
Match: XP_038881119.1 (probable ATP synthase 24 kDa subunit, mitochondrial [Benincasa hispida])

HSP 1 Score: 419.5 bits (1077), Expect = 3.0e-113
Identity = 222/230 (96.52%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI
Sbjct: 11  SKQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMKMAREKADLFSE+QRIKYTIQT+TQDIPDARSYLLALKDIRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKMAREKADLFSESQRIKYTIQTKTQDIPDARSYLLALKDIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           RGL+DDLGAEAMMFDALEKVEKELKKPL+RNDKKGMSILMAEFDKINQKLGIRREDLPKY
Sbjct: 131 RGLSDDLGAEAMMFDALEKVEKELKKPLMRNDKKGMSILMAEFDKINQKLGIRREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELKISKAQLEELKKDA+EAMETQKKREEFKDEEMVD KSLDVRNFL
Sbjct: 191 EEQLELKISKAQLEELKKDALEAMETQKKREEFKDEEMVDTKSLDVRNFL 240

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BLAST of Clc01G15780 vs. NCBI nr
Match: XP_022132532.1 (probable ATP synthase 24 kDa subunit, mitochondrial [Momordica charantia])

HSP 1 Score: 414.8 bits (1065), Expect = 7.4e-112
Identity = 218/230 (94.78%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI
Sbjct: 11  SKQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMK+AREKADLFSE+QRIKYTIQTRTQDIPDAR+YLL LKDIRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDIPDARTYLLTLKDIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           RGLTD+LGAEA+MFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQKLGIRREDLPKY
Sbjct: 131 RGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQKLGIRREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELKISKAQL+ELKKDA+EAMETQKKREEFKDEEMVD KSLDVRNFL
Sbjct: 191 EEQLELKISKAQLDELKKDALEAMETQKKREEFKDEEMVDTKSLDVRNFL 240

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BLAST of Clc01G15780 vs. NCBI nr
Match: XP_008440128.1 (PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Cucumis melo] >TYK12972.1 putative ATP synthase 24 kDa subunit [Cucumis melo var. makuwa])

HSP 1 Score: 408.7 bits (1049), Expect = 5.3e-110
Identity = 216/230 (93.91%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHA PVRHFAKEAARPALKGDEMLK+IFLEVKKKFETAL VF+KEKI
Sbjct: 11  SKQVLGSQSILHQGHAFPVRHFAKEAARPALKGDEMLKDIFLEVKKKFETALAVFKKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMKMAREKADLFSE+QRIKYTIQTRTQDIPDARSYLLAL++IRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKMAREKADLFSESQRIKYTIQTRTQDIPDARSYLLALQEIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           RGL+DDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY
Sbjct: 131 RGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELKISKAQLEE+KKDA+EAMETQKKREEFKD+EMVD KSLDVRNFL
Sbjct: 191 EEQLELKISKAQLEEIKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

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BLAST of Clc01G15780 vs. NCBI nr
Match: XP_022977838.1 (probable ATP synthase 24 kDa subunit, mitochondrial [Cucurbita maxima])

HSP 1 Score: 408.3 bits (1048), Expect = 6.9e-110
Identity = 215/230 (93.48%), Postives = 224/230 (97.39%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHAIPVRHFAKEAARPALKGD+MLKNIFLEVKKKFETA+DVFRKEKI
Sbjct: 11  SKQVLGSQSILHQGHAIPVRHFAKEAARPALKGDDMLKNIFLEVKKKFETAIDVFRKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDAR+YLL LKDIRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARTYLLTLKDIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           R L+D+LGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGI+REDLPKY
Sbjct: 131 RHLSDELGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIKREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELK+SKAQLEELKKDA+EAMETQKKREEFKDE M+D KSLDVRNFL
Sbjct: 191 EEQLELKMSKAQLEELKKDALEAMETQKKREEFKDEAMIDTKSLDVRNFL 240

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BLAST of Clc01G15780 vs. NCBI nr
Match: XP_004141966.1 (probable ATP synthase 24 kDa subunit, mitochondrial [Cucumis sativus] >KGN48421.1 hypothetical protein Csa_003064 [Cucumis sativus])

HSP 1 Score: 407.9 bits (1047), Expect = 9.0e-110
Identity = 215/230 (93.48%), Postives = 224/230 (97.39%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHA PVRHFAKEAA PALKGDEMLKNIFLEVKKKFETAL VF+KEKI
Sbjct: 11  SKQVLGSQSILHQGHAFPVRHFAKEAAPPALKGDEMLKNIFLEVKKKFETALAVFKKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMK+AREKADLFSE+QRIKYTIQTRTQDIPDARSYLLALK+IRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDIPDARSYLLALKEIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           RGL+DDLGAEAMMFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQKLGIRREDLPKY
Sbjct: 131 RGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQKLGIRREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELKISKAQLEE+KKDA+EAMETQKKREEFKD+EMVD KSLDVRNFL
Sbjct: 191 EEQLELKISKAQLEEMKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

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BLAST of Clc01G15780 vs. ExPASy Swiss-Prot
Match: Q9SJ12 (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.9e-87
Identity = 164/234 (70.09%), Postives = 201/234 (85.90%), Query Frame = 0


Query: 128 FVNISLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFR 187
           F++ S  + G   IL Q HAIPVR FAKEAARP  KGDEMLK +F ++K KF+ A+D+ R
Sbjct: 7   FLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILR 66

Query: 188 KEKITIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKD 247
           KEKIT+DP+DPAAV QYA VMK  R+KAD+FSE+QRIK+ I T TQDIPDAR+YLL L++
Sbjct: 67  KEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQE 126

Query: 248 IRIKRGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRRED 307
           IR +RGLTD+LGAEAMMF+ALEKVEK++KKPLLR+DKKGM +L+AEF+K N+KLGIR+ED
Sbjct: 127 IRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKED 186

Query: 308 LPKYEEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           LPKYEE LEL ++KAQL+ELK DAVEAME+QKK+EEF+DEEM D KSLD+RNF+
Sbjct: 187 LPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240

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BLAST of Clc01G15780 vs. ExPASy TrEMBL
Match: A0A6J1BU34 (probable ATP synthase 24 kDa subunit, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005367 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 3.6e-112
Identity = 218/230 (94.78%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI
Sbjct: 11  SKQVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMK+AREKADLFSE+QRIKYTIQTRTQDIPDAR+YLL LKDIRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDIPDARTYLLTLKDIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           RGLTD+LGAEA+MFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQKLGIRREDLPKY
Sbjct: 131 RGLTDELGAEALMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQKLGIRREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELKISKAQL+ELKKDA+EAMETQKKREEFKDEEMVD KSLDVRNFL
Sbjct: 191 EEQLELKISKAQLDELKKDALEAMETQKKREEFKDEEMVDTKSLDVRNFL 240

[Close]

BLAST of Clc01G15780 vs. ExPASy TrEMBL
Match: A0A5D3CNN3 (Putative ATP synthase 24 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005690 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 2.6e-110
Identity = 216/230 (93.91%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHA PVRHFAKEAARPALKGDEMLK+IFLEVKKKFETAL VF+KEKI
Sbjct: 11  SKQVLGSQSILHQGHAFPVRHFAKEAARPALKGDEMLKDIFLEVKKKFETALAVFKKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMKMAREKADLFSE+QRIKYTIQTRTQDIPDARSYLLAL++IRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKMAREKADLFSESQRIKYTIQTRTQDIPDARSYLLALQEIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           RGL+DDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY
Sbjct: 131 RGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELKISKAQLEE+KKDA+EAMETQKKREEFKD+EMVD KSLDVRNFL
Sbjct: 191 EEQLELKISKAQLEEIKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

[Close]

BLAST of Clc01G15780 vs. ExPASy TrEMBL
Match: A0A1S3B0D0 (probable ATP synthase 24 kDa subunit, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484687 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 2.6e-110
Identity = 216/230 (93.91%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHA PVRHFAKEAARPALKGDEMLK+IFLEVKKKFETAL VF+KEKI
Sbjct: 11  SKQVLGSQSILHQGHAFPVRHFAKEAARPALKGDEMLKDIFLEVKKKFETALAVFKKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMKMAREKADLFSE+QRIKYTIQTRTQDIPDARSYLLAL++IRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKMAREKADLFSESQRIKYTIQTRTQDIPDARSYLLALQEIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           RGL+DDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY
Sbjct: 131 RGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELKISKAQLEE+KKDA+EAMETQKKREEFKD+EMVD KSLDVRNFL
Sbjct: 191 EEQLELKISKAQLEEIKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

[Close]

BLAST of Clc01G15780 vs. ExPASy TrEMBL
Match: A0A6J1IR90 (probable ATP synthase 24 kDa subunit, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111478016 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 3.3e-110
Identity = 215/230 (93.48%), Postives = 224/230 (97.39%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHAIPVRHFAKEAARPALKGD+MLKNIFLEVKKKFETA+DVFRKEKI
Sbjct: 11  SKQVLGSQSILHQGHAIPVRHFAKEAARPALKGDDMLKNIFLEVKKKFETAIDVFRKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDAR+YLL LKDIRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARTYLLTLKDIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           R L+D+LGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGI+REDLPKY
Sbjct: 131 RHLSDELGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIKREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELK+SKAQLEELKKDA+EAMETQKKREEFKDE M+D KSLDVRNFL
Sbjct: 191 EEQLELKMSKAQLEELKKDALEAMETQKKREEFKDEAMIDTKSLDVRNFL 240

[Close]

BLAST of Clc01G15780 vs. ExPASy TrEMBL
Match: A0A0A0KKY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486940 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 4.4e-110
Identity = 215/230 (93.48%), Postives = 224/230 (97.39%), Query Frame = 0


Query: 132 SLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFRKEKI 191
           S  VLGSQSILHQGHA PVRHFAKEAA PALKGDEMLKNIFLEVKKKFETAL VF+KEKI
Sbjct: 11  SKQVLGSQSILHQGHAFPVRHFAKEAAPPALKGDEMLKNIFLEVKKKFETALAVFKKEKI 70

Query: 192 TIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKDIRIK 251
           TIDPDDPAAVAQYAKVMK+AREKADLFSE+QRIKYTIQTRTQDIPDARSYLLALK+IRIK
Sbjct: 71  TIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDIPDARSYLLALKEIRIK 130

Query: 252 RGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRREDLPKY 311
           RGL+DDLGAEAMMFDALEKVEKELKKPLLRNDKKGMS+LMAEFDKINQKLGIRREDLPKY
Sbjct: 131 RGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQKLGIRREDLPKY 190

Query: 312 EEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           EEQLELKISKAQLEE+KKDA+EAMETQKKREEFKD+EMVD KSLDVRNFL
Sbjct: 191 EEQLELKISKAQLEEMKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

[Close]

BLAST of Clc01G15780 vs. TAIR 10
Match: AT2G21870.1 (copper ion binding;cobalt ion binding;zinc ion binding )

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-88
Identity = 164/234 (70.09%), Postives = 201/234 (85.90%), Query Frame = 0


Query: 128 FVNISLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFR 187
           F++ S  + G   IL Q HAIPVR FAKEAARP  KGDEMLK +F ++K KF+ A+D+ R
Sbjct: 7   FLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILR 66

Query: 188 KEKITIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKD 247
           KEKIT+DP+DPAAV QYA VMK  R+KAD+FSE+QRIK+ I T TQDIPDAR+YLL L++
Sbjct: 67  KEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQE 126

Query: 248 IRIKRGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRRED 307
           IR +RGLTD+LGAEAMMF+ALEKVEK++KKPLLR+DKKGM +L+AEF+K N+KLGIR+ED
Sbjct: 127 IRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKED 186

Query: 308 LPKYEEQLELKISKAQLEELKKDAVEAMETQKKREEFKDEEMVDAKSLDVRNFL 362
           LPKYEE LEL ++KAQL+ELK DAVEAME+QKK+EEF+DEEM D KSLD+RNF+
Sbjct: 187 LPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240

[Close]

BLAST of Clc01G15780 vs. TAIR 10
Match: AT2G21870.2 (copper ion binding;cobalt ion binding;zinc ion binding )

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-79
Identity = 149/214 (69.63%), Postives = 183/214 (85.51%), Query Frame = 0


Query: 128 FVNISLPVLGSQSILHQGHAIPVRHFAKEAARPALKGDEMLKNIFLEVKKKFETALDVFR 187
           F++ S  + G   IL Q HAIPVR FAKEAARP  KGDEMLK +F ++K KF+ A+D+ R
Sbjct: 7   FLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILR 66

Query: 188 KEKITIDPDDPAAVAQYAKVMKMAREKADLFSEAQRIKYTIQTRTQDIPDARSYLLALKD 247
           KEKIT+DP+DPAAV QYA VMK  R+KAD+FSE+QRIK+ I T TQDIPDAR+YLL L++
Sbjct: 67  KEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQE 126

Query: 248 IRIKRGLTDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSILMAEFDKINQKLGIRRED 307
           IR +RGLTD+LGAEAMMF+ALEKVEK++KKPLLR+DKKGM +L+AEF+K N+KLGIR+ED
Sbjct: 127 IRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKED 186

Query: 308 LPKYEEQLELKISKAQLEELKKDAVEAMETQKKR 342
           LPKYEE LEL ++KAQL+ELK DAVEAME+QKK+
Sbjct: 187 LPKYEENLELSMAKAQLDELKSDAVEAMESQKKK 220

The following BLAST results are available for this feature:

BLAST of Clc01G15780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881119.1	3.0e-113	96.52	probable ATP synthase 24 kDa subunit, mitochondrial [Benincasa hispida]	[more]
XP_022132532.1	7.4e-112	94.78	probable ATP synthase 24 kDa subunit, mitochondrial [Momordica charantia]	[more]
XP_008440128.1	5.3e-110	93.91	PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Cucumis melo] >T...	[more]
XP_022977838.1	6.9e-110	93.48	probable ATP synthase 24 kDa subunit, mitochondrial [Cucurbita maxima]	[more]
XP_004141966.1	9.0e-110	93.48	probable ATP synthase 24 kDa subunit, mitochondrial [Cucumis sativus] >KGN48421....	[more]

BLAST of Clc01G15780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ12	2.9e-87	70.09	Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Clc01G15780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BU34	3.6e-112	94.78	probable ATP synthase 24 kDa subunit, mitochondrial OS=Momordica charantia OX=36...	[more]
A0A5D3CNN3	2.6e-110	93.91	Putative ATP synthase 24 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3B0D0	2.6e-110	93.91	probable ATP synthase 24 kDa subunit, mitochondrial OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1IR90	3.3e-110	93.48	probable ATP synthase 24 kDa subunit, mitochondrial OS=Cucurbita maxima OX=3661 ...	[more]
A0A0A0KKY9	4.4e-110	93.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486940 PE=4 SV=1	[more]

BLAST of Clc01G15780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21870.1	2.1e-88	70.09	copper ion binding;cobalt ion binding;zinc ion binding	[more]
AT2G21870.2	2.3e-79	69.63	copper ion binding;cobalt ion binding;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 310..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
IPR031432	MALE GAMETOPHYTE DEFECTIVE 1	PFAM	PF15704	Mt_ATP_synt	coord: 154..340 e-value: 5.3E-78 score: 261.2
IPR031432	MALE GAMETOPHYTE DEFECTIVE 1	PANTHER	PTHR36013	ATP SYNTHASE 24 KDA SUBUNIT, MITOCHONDRIAL-RELATED	coord: 135..361

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G15780.2	Clc01G15780.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009555	pollen development