Clc01G12690 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G12690
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA/RNA polymerases superfamily protein
LocationClcChr01: 24200724 .. 24202222 (-)
RNA-Seq ExpressionClc01G12690
SyntenyClc01G12690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACCGGTGATTTTTCGAGAAGGTTTGGAAGGAGATTCTAGTAACCCTTAGGTAAATATGAAAGATCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAATAGCTCAAAGGTTGGCATCTAGTGTTAAAACAACTTTCGGAGATCCCGAGAGGAAGTATGGGATCGAGAGGTTCAAAGCCTTAAGAGCAAGTATGTTCGAGGGAACAATAGGATTCCAAAGAAGCAAAAGTATGGATTACTCAACTAGAAAAGTGCTTCCGAGTAATGAGGTGTTCGAAAGATCGGATAGTCTCTTTGGTCGTCTTCTTACTTCAAAATGGAGTAGAAGACTGGTGGCGGTTAACTAAAGGAAGATGGGAGAAGGATATAGAACTTACTTGGAAGAAGCTTTCTATGAGAAAGTATTTTCCTCAAACCTTTCGTGATGCAAAACAAAGAGAGTTTTTGTATTTGGTGTAGGGTTTGATGTCGGTAGTAGAGTATGAAAGGAAATTCACTGGGTTTTCTAAGTACGCTACTAGCATAGTCATAGATAAAGTTAATAGGTGCAAAAGGTTTGTGGAAGAATTAAGAAGTAAAATTCGTACTCCCGTAGCAGTTAGTGTTAAGTGGGACAAGTTTTCCCAAGTTATTAAAAGTCGCTATGAGAGTGGAGGAGAATTTGGAAAGACAAGCGGCGGAGGAAGAAATGAATGTATAATACGGGAGGAAAAAGTGGAAAGTAAGAAATGTATCTCCAGGATTTCAAAGAACAATTCGTCTAAGTCGGGAGTAGAACAAAGTGTGTCAACAGGAGTTAGGATTCTTAACTTGAATAAGAGACCATGGTGTGAAGATTGTAGAAGATATCACACAAGACGGTGTTTCGAAAATTGGATGTTTGTTATGGTTGTGGTAAAGTGGGACATTATAAGAGGAGATGTCCGAAGCTTGGATAGGGAAATAAGGGAGTTCATAGAGTGGAAGTTTAATTTATTATCCCTATATTTGTGATCAGTGTGAATAATAGAATATTAAGACTACTCGACAAAAGAGTTATGAAGATAACTGGAGAAGAGATCTTGAGTTTAAAGTGGATGATAAGGTTTTTTTTGAAATTGTCATTGTGAAAGGGAGTTTTAAGGTTTGGTAGGAAAGGGAAGCTAAGTCCGAGATTTATTGGACCTTATGAGATTCTGGAAAGGATTGGACCAGTGGCTTACAGATTGGAGATGTCCAAGATTCATAACAAATTTCATGTTTCAGTGTTGAGGAGGTATATTCTCGATCTTACTCACGTATTAGAAGTACAACCATTAGAGTTGAAAGAAGATTTGAGTTATAAAGAAAAATGGATCCAGATACTAGACGAGAAGGAACAAGTATTGAGAACTAAAGTGATTCTGTTGGTAAAGGTGCTTTGGAGGAATCATAGTGTTGAAGAAGCTACTCGGGAAACTGAGCAAATGATCAAGAAGTATCCACATTTGTTTCCGAGGAATTAA

mRNA sequence

ATGCTACCGGTGATTTTTCGAGAAGCTCAAAGGTTGGCATCTAGTGTTAAAACAACTTTCGGAGATCCCGAGAGGAAGTATGGGATCGAGAGGTTCAAAGCCTTAAGAGCAAGTATGTTCGAGGGAACAATAGGATTCCAAAGAAGCAAAAGTATGGATTACTCAACTAGAAAAGTGCTTCCGAGTAATGAGGGTTTGATGTCGGTAGTAGAGTATGAAAGGAAATTCACTGGGTTTTCTAAGTACGCTACTAGCATAGTCATAGATAAAGTTAATAGGTGCAAAAGGTTTGTGGAAGAATTAAGAAGTAAAATTCGTACTCCCGTAGCAGTTAGTGTTAAGTGGGACAAGTTTTCCCAAGTTATTAAAAGTCGCTATGAGAGTGGAGGAGAATTTGGAAAGACAAGCGGCGGAGGAAGAAATGAATGTATAATACGGGAGGAAAAAGTGGAAAGTAAGAAATGTATCTCCAGGATTTCAAAGAACAATTCGTCTAAGTCGGGAGTAGAACAAAGTGTGTCAACAGGAGTTAGGATTCTTAACTTGAATAAGAGACCATGGTGTGAAGATTGTAGAAGATATCACACAAGACGGTGTTTCGAAAATTGGATGTTTGTTATGGTTGTGGGAGTTTTAAGGTTTGGTAGGAAAGGGAAGCTAAGTCCGAGATTTATTGGACCTTATGAGATTCTGGAAAGGATTGGACCAGTGGCTTACAGATTGGAGATGTCCAAGATTCATAACAAATTTCATGTTTCAGTGTTGAGGAGGTATATTCTCGATCTTACTCACGTATTAGAAGTACAACCATTAGAGTTGAAAGAAGATTTGAGTTATAAAGAAAAATGGATCCAGATACTAGACGAGAAGGAACAAGTATTGAGAACTAAAGTGATTCTGTTGGTAAAGGTGCTTTGGAGGAATCATAGTGTTGAAGAAGCTACTCGGGAAACTGAGCAAATGATCAAGAAGTATCCACATTTGTTTCCGAGGAATTAA

Coding sequence (CDS)

ATGCTACCGGTGATTTTTCGAGAAGCTCAAAGGTTGGCATCTAGTGTTAAAACAACTTTCGGAGATCCCGAGAGGAAGTATGGGATCGAGAGGTTCAAAGCCTTAAGAGCAAGTATGTTCGAGGGAACAATAGGATTCCAAAGAAGCAAAAGTATGGATTACTCAACTAGAAAAGTGCTTCCGAGTAATGAGGGTTTGATGTCGGTAGTAGAGTATGAAAGGAAATTCACTGGGTTTTCTAAGTACGCTACTAGCATAGTCATAGATAAAGTTAATAGGTGCAAAAGGTTTGTGGAAGAATTAAGAAGTAAAATTCGTACTCCCGTAGCAGTTAGTGTTAAGTGGGACAAGTTTTCCCAAGTTATTAAAAGTCGCTATGAGAGTGGAGGAGAATTTGGAAAGACAAGCGGCGGAGGAAGAAATGAATGTATAATACGGGAGGAAAAAGTGGAAAGTAAGAAATGTATCTCCAGGATTTCAAAGAACAATTCGTCTAAGTCGGGAGTAGAACAAAGTGTGTCAACAGGAGTTAGGATTCTTAACTTGAATAAGAGACCATGGTGTGAAGATTGTAGAAGATATCACACAAGACGGTGTTTCGAAAATTGGATGTTTGTTATGGTTGTGGGAGTTTTAAGGTTTGGTAGGAAAGGGAAGCTAAGTCCGAGATTTATTGGACCTTATGAGATTCTGGAAAGGATTGGACCAGTGGCTTACAGATTGGAGATGTCCAAGATTCATAACAAATTTCATGTTTCAGTGTTGAGGAGGTATATTCTCGATCTTACTCACGTATTAGAAGTACAACCATTAGAGTTGAAAGAAGATTTGAGTTATAAAGAAAAATGGATCCAGATACTAGACGAGAAGGAACAAGTATTGAGAACTAAAGTGATTCTGTTGGTAAAGGTGCTTTGGAGGAATCATAGTGTTGAAGAAGCTACTCGGGAAACTGAGCAAATGATCAAGAAGTATCCACATTTGTTTCCGAGGAATTAA

Protein sequence

MLPVIFREAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIGFQRSKSMDYSTRKVLPSNEGLMSVVEYERKFTGFSKYATSIVIDKVNRCKRFVEELRSKIRTPVAVSVKWDKFSQVIKSRYESGGEFGKTSGGGRNECIIREEKVESKKCISRISKNNSSKSGVEQSVSTGVRILNLNKRPWCEDCRRYHTRRCFENWMFVMVVGVLRFGRKGKLSPRFIGPYEILERIGPVAYRLEMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIKKYPHLFPRN
Homology
BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 4.5e-39
Identity = 90/124 (72.58%), Postives = 106/124 (85.48%), Query Frame = 0

Query: 211  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVL 270
            VLRFGRKGKLSPRFI PYEILERIGPVAYRL    E+S+IH+ FHVS+LR+Y+ +  H+L
Sbjct: 949  VLRFGRKGKLSPRFIWPYEILERIGPVAYRLVLPMELSRIHDVFHVSMLRKYVPNPYHIL 1008

Query: 271  EVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIK-KY 330
            E QP+ LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLWRNH+ EEAT ETEQ +K +Y
Sbjct: 1009 EAQPVHLKENLSYEEEPIQILDKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAVKVQY 1068

BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 5.0e-14
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 0

Query: 7   REAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIG--------------FQ----- 66
           R AQRL S +++   DPE+KYGIER KAL A+ F GT                F+     
Sbjct: 67  RLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCP 126

Query: 67  ----------------RSKSMDY----STRKVLPSNEGLMSVVEYERKFTGFSKYATSIV 125
                            +K  D+     +R+ + S+   M+V +YE+K+T  SKYAT ++
Sbjct: 127 EDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKYTELSKYATRVI 186


HSP 2 Score: 172.6 bits (436), Expect = 5.9e-39
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0

Query: 211 VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVL 270
           VLRFGRK KLSPRFIGPYEILERIGPVAYRL    E+S+IH+ FHVS+LR+YI D +H+L
Sbjct: 148 VLRFGRKEKLSPRFIGPYEILERIGPVAYRLVLPMELSRIHDVFHVSMLRKYIPDPSHIL 207

Query: 271 EVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIK-KY 330
           E QP+ LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLWRN++ EEA  ETEQ +K KY
Sbjct: 208 EAQPVHLKENLSYEEEPIQILDKKEQVLRNKVIPLVKVLWRNYNTEEAMWETEQAMKVKY 267

BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0054352.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK12389.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 2.2e-38
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 0

Query: 210 GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHV 269
           GVLRFGRKGKLSPR+IGPY+I+ER+GP AYRL    E+++IH+ FHVS+LR+YI D +HV
Sbjct: 250 GVLRFGRKGKLSPRYIGPYQIIERVGPAAYRLELPAELARIHDVFHVSMLRKYISDPSHV 309

Query: 270 LEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIKK- 329
           L+VQP ELKEDLSY+E+ +QILD KEQVLR K I LVKVLWR+H +EEAT E+E  I++ 
Sbjct: 310 LQVQPFELKEDLSYREEAVQILDRKEQVLRNKTIRLVKVLWRHHGIEEATWESEDQIRRS 369

BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0038428.1 (Chromo domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 3.8e-38
Identity = 85/126 (67.46%), Postives = 107/126 (84.92%), Query Frame = 0

Query: 209 VGVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTH 268
           +GVLRFGRKGKLSPR+IGPY+I+ER+GP AYRL    E+++IH+ FHVS+LR+YI D +H
Sbjct: 1   MGVLRFGRKGKLSPRYIGPYQIIERVGPAAYRLELPTELARIHDVFHVSMLRKYISDPSH 60

Query: 269 VLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETE-QMIK 328
           VL+VQP+ELKEDLSY+E+ +QILD KEQVLR K+I LVKVLW +H +EEAT E+E QM +
Sbjct: 61  VLQVQPIELKEDLSYREEAVQILDRKEQVLRNKMIRLVKVLWIHHGIEEATWESEDQMRR 120

Query: 329 KYPHLF 330
            YP LF
Sbjct: 121 SYPTLF 126

BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0042458.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK22918.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 5.0e-38
Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 0

Query: 210 GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHV 269
           GVLRFGRKGKLSPRFI PYEILERIGPVAYRL    E+S+IH+ FHVS+LR+Y+ D +H+
Sbjct: 495 GVLRFGRKGKLSPRFIRPYEILERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPSHI 554

Query: 270 LEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIKKY 327
           LE QP++LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLWRNH+ EEAT E EQ +K  
Sbjct: 555 LEAQPVQLKENLSYEEEPIQILDKKEQVLRNKVIPLVKVLWRNHNTEEATWELEQAMKPT 614

BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-39
Identity = 90/124 (72.58%), Postives = 106/124 (85.48%), Query Frame = 0

Query: 211  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVL 270
            VLRFGRKGKLSPRFI PYEILERIGPVAYRL    E+S+IH+ FHVS+LR+Y+ +  H+L
Sbjct: 949  VLRFGRKGKLSPRFIWPYEILERIGPVAYRLVLPMELSRIHDVFHVSMLRKYVPNPYHIL 1008

Query: 271  EVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIK-KY 330
            E QP+ LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLWRNH+ EEAT ETEQ +K +Y
Sbjct: 1009 EAQPVHLKENLSYEEEPIQILDKKEQVLRNKVIPLVKVLWRNHNTEEATWETEQAVKVQY 1068

BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-14
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 0

Query: 7   REAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIG--------------FQ----- 66
           R AQRL S +++   DPE+KYGIER KAL A+ F GT                F+     
Sbjct: 67  RLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCP 126

Query: 67  ----------------RSKSMDY----STRKVLPSNEGLMSVVEYERKFTGFSKYATSIV 125
                            +K  D+     +R+ + S+   M+V +YE+K+T  SKYAT ++
Sbjct: 127 EDRKVELASFLLQNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKYTELSKYATRVI 186


HSP 2 Score: 172.6 bits (436), Expect = 2.8e-39
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0

Query: 211 VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVL 270
           VLRFGRK KLSPRFIGPYEILERIGPVAYRL    E+S+IH+ FHVS+LR+YI D +H+L
Sbjct: 148 VLRFGRKEKLSPRFIGPYEILERIGPVAYRLVLPMELSRIHDVFHVSMLRKYIPDPSHIL 207

Query: 271 EVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIK-KY 330
           E QP+ LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLWRN++ EEA  ETEQ +K KY
Sbjct: 208 EAQPVHLKENLSYEEEPIQILDKKEQVLRNKVIPLVKVLWRNYNTEEAMWETEQAMKVKY 267

BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5A7UF07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001710 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-38
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 0

Query: 210 GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHV 269
           GVLRFGRKGKLSPR+IGPY+I+ER+GP AYRL    E+++IH+ FHVS+LR+YI D +HV
Sbjct: 250 GVLRFGRKGKLSPRYIGPYQIIERVGPAAYRLELPAELARIHDVFHVSMLRKYISDPSHV 309

Query: 270 LEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIKK- 329
           L+VQP ELKEDLSY+E+ +QILD KEQVLR K I LVKVLWR+H +EEAT E+E  I++ 
Sbjct: 310 LQVQPFELKEDLSYREEAVQILDRKEQVLRNKTIRLVKVLWRHHGIEEATWESEDQIRRS 369

BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5A7T6E5 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003280 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-38
Identity = 85/126 (67.46%), Postives = 107/126 (84.92%), Query Frame = 0

Query: 209 VGVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTH 268
           +GVLRFGRKGKLSPR+IGPY+I+ER+GP AYRL    E+++IH+ FHVS+LR+YI D +H
Sbjct: 1   MGVLRFGRKGKLSPRYIGPYQIIERVGPAAYRLELPTELARIHDVFHVSMLRKYISDPSH 60

Query: 269 VLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETE-QMIK 328
           VL+VQP+ELKEDLSY+E+ +QILD KEQVLR K+I LVKVLW +H +EEAT E+E QM +
Sbjct: 61  VLQVQPIELKEDLSYREEAVQILDRKEQVLRNKMIRLVKVLWIHHGIEEATWESEDQMRR 120

Query: 329 KYPHLF 330
            YP LF
Sbjct: 121 SYPTLF 126

BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5D3DHF7 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00600 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-38
Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 0

Query: 210 GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHV 269
           GVLRFGRKGKLSPRFI PYEILERIGPVAYRL    E+S+IH+ FHVS+LR+Y+ D +H+
Sbjct: 495 GVLRFGRKGKLSPRFIRPYEILERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPSHI 554

Query: 270 LEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIKKY 327
           LE QP++LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLWRNH+ EEAT E EQ +K  
Sbjct: 555 LEAQPVQLKENLSYEEEPIQILDKKEQVLRNKVIPLVKVLWRNHNTEEATWELEQAMKPT 614

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0035225.14.5e-3972.58DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... [more]
KAA0035225.15.0e-1435.03DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... [more]
KAA0054352.12.2e-3868.00reverse transcriptase [Cucumis melo var. makuwa] >TYK12389.1 reverse transcripta... [more]
KAA0038428.13.8e-3867.46Chromo domain-containing protein [Cucumis melo var. makuwa][more]
KAA0042458.15.0e-3871.90putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DES52.2e-3972.58DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DES52.4e-1435.03DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UF071.1e-3868.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5A7T6E51.8e-3867.46Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3DHF72.4e-3871.90Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 193..325
NoneNo IPR availablePANTHERPTHR46148:SF21DOMAIN PROTEIN, PUTATIVE-RELATEDcoord: 193..325

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G12690.1Clc01G12690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding