Clc01G12690 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTACCGGTGATTTTTCGAGAAGGTTTGGAAGGAGATTCTAGTAACCCTTAGGTAAATATGAAAGATCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAATAGCTCAAAGGTTGGCATCTAGTGTTAAAACAACTTTCGGAGATCCCGAGAGGAAGTATGGGATCGAGAGGTTCAAAGCCTTAAGAGCAAGTATGTTCGAGGGAACAATAGGATTCCAAAGAAGCAAAAGTATGGATTACTCAACTAGAAAAGTGCTTCCGAGTAATGAGGTGTTCGAAAGATCGGATAGTCTCTTTGGTCGTCTTCTTACTTCAAAATGGAGTAGAAGACTGGTGGCGGTTAACTAAAGGAAGATGGGAGAAGGATATAGAACTTACTTGGAAGAAGCTTTCTATGAGAAAGTATTTTCCTCAAACCTTTCGTGATGCAAAACAAAGAGAGTTTTTGTATTTGGTGTAGGGTTTGATGTCGGTAGTAGAGTATGAAAGGAAATTCACTGGGTTTTCTAAGTACGCTACTAGCATAGTCATAGATAAAGTTAATAGGTGCAAAAGGTTTGTGGAAGAATTAAGAAGTAAAATTCGTACTCCCGTAGCAGTTAGTGTTAAGTGGGACAAGTTTTCCCAAGTTATTAAAAGTCGCTATGAGAGTGGAGGAGAATTTGGAAAGACAAGCGGCGGAGGAAGAAATGAATGTATAATACGGGAGGAAAAAGTGGAAAGTAAGAAATGTATCTCCAGGATTTCAAAGAACAATTCGTCTAAGTCGGGAGTAGAACAAAGTGTGTCAACAGGAGTTAGGATTCTTAACTTGAATAAGAGACCATGGTGTGAAGATTGTAGAAGATATCACACAAGACGGTGTTTCGAAAATTGGATGTTTGTTATGGTTGTGGTAAAGTGGGACATTATAAGAGGAGATGTCCGAAGCTTGGATAGGGAAATAAGGGAGTTCATAGAGTGGAAGTTTAATTTATTATCCCTATATTTGTGATCAGTGTGAATAATAGAATATTAAGACTACTCGACAAAAGAGTTATGAAGATAACTGGAGAAGAGATCTTGAGTTTAAAGTGGATGATAAGGTTTTTTTTGAAATTGTCATTGTGAAAGGGAGTTTTAAGGTTTGGTAGGAAAGGGAAGCTAAGTCCGAGATTTATTGGACCTTATGAGATTCTGGAAAGGATTGGACCAGTGGCTTACAGATTGGAGATGTCCAAGATTCATAACAAATTTCATGTTTCAGTGTTGAGGAGGTATATTCTCGATCTTACTCACGTATTAGAAGTACAACCATTAGAGTTGAAAGAAGATTTGAGTTATAAAGAAAAATGGATCCAGATACTAGACGAGAAGGAACAAGTATTGAGAACTAAAGTGATTCTGTTGGTAAAGGTGCTTTGGAGGAATCATAGTGTTGAAGAAGCTACTCGGGAAACTGAGCAAATGATCAAGAAGTATCCACATTTGTTTCCGAGGAATTAA ATGCTACCGGTGATTTTTCGAGAAGCTCAAAGGTTGGCATCTAGTGTTAAAACAACTTTCGGAGATCCCGAGAGGAAGTATGGGATCGAGAGGTTCAAAGCCTTAAGAGCAAGTATGTTCGAGGGAACAATAGGATTCCAAAGAAGCAAAAGTATGGATTACTCAACTAGAAAAGTGCTTCCGAGTAATGAGGGTTTGATGTCGGTAGTAGAGTATGAAAGGAAATTCACTGGGTTTTCTAAGTACGCTACTAGCATAGTCATAGATAAAGTTAATAGGTGCAAAAGGTTTGTGGAAGAATTAAGAAGTAAAATTCGTACTCCCGTAGCAGTTAGTGTTAAGTGGGACAAGTTTTCCCAAGTTATTAAAAGTCGCTATGAGAGTGGAGGAGAATTTGGAAAGACAAGCGGCGGAGGAAGAAATGAATGTATAATACGGGAGGAAAAAGTGGAAAGTAAGAAATGTATCTCCAGGATTTCAAAGAACAATTCGTCTAAGTCGGGAGTAGAACAAAGTGTGTCAACAGGAGTTAGGATTCTTAACTTGAATAAGAGACCATGGTGTGAAGATTGTAGAAGATATCACACAAGACGGTGTTTCGAAAATTGGATGTTTGTTATGGTTGTGGGAGTTTTAAGGTTTGGTAGGAAAGGGAAGCTAAGTCCGAGATTTATTGGACCTTATGAGATTCTGGAAAGGATTGGACCAGTGGCTTACAGATTGGAGATGTCCAAGATTCATAACAAATTTCATGTTTCAGTGTTGAGGAGGTATATTCTCGATCTTACTCACGTATTAGAAGTACAACCATTAGAGTTGAAAGAAGATTTGAGTTATAAAGAAAAATGGATCCAGATACTAGACGAGAAGGAACAAGTATTGAGAACTAAAGTGATTCTGTTGGTAAAGGTGCTTTGGAGGAATCATAGTGTTGAAGAAGCTACTCGGGAAACTGAGCAAATGATCAAGAAGTATCCACATTTGTTTCCGAGGAATTAA ATGCTACCGGTGATTTTTCGAGAAGCTCAAAGGTTGGCATCTAGTGTTAAAACAACTTTCGGAGATCCCGAGAGGAAGTATGGGATCGAGAGGTTCAAAGCCTTAAGAGCAAGTATGTTCGAGGGAACAATAGGATTCCAAAGAAGCAAAAGTATGGATTACTCAACTAGAAAAGTGCTTCCGAGTAATGAGGGTTTGATGTCGGTAGTAGAGTATGAAAGGAAATTCACTGGGTTTTCTAAGTACGCTACTAGCATAGTCATAGATAAAGTTAATAGGTGCAAAAGGTTTGTGGAAGAATTAAGAAGTAAAATTCGTACTCCCGTAGCAGTTAGTGTTAAGTGGGACAAGTTTTCCCAAGTTATTAAAAGTCGCTATGAGAGTGGAGGAGAATTTGGAAAGACAAGCGGCGGAGGAAGAAATGAATGTATAATACGGGAGGAAAAAGTGGAAAGTAAGAAATGTATCTCCAGGATTTCAAAGAACAATTCGTCTAAGTCGGGAGTAGAACAAAGTGTGTCAACAGGAGTTAGGATTCTTAACTTGAATAAGAGACCATGGTGTGAAGATTGTAGAAGATATCACACAAGACGGTGTTTCGAAAATTGGATGTTTGTTATGGTTGTGGGAGTTTTAAGGTTTGGTAGGAAAGGGAAGCTAAGTCCGAGATTTATTGGACCTTATGAGATTCTGGAAAGGATTGGACCAGTGGCTTACAGATTGGAGATGTCCAAGATTCATAACAAATTTCATGTTTCAGTGTTGAGGAGGTATATTCTCGATCTTACTCACGTATTAGAAGTACAACCATTAGAGTTGAAAGAAGATTTGAGTTATAAAGAAAAATGGATCCAGATACTAGACGAGAAGGAACAAGTATTGAGAACTAAAGTGATTCTGTTGGTAAAGGTGCTTTGGAGGAATCATAGTGTTGAAGAAGCTACTCGGGAAACTGAGCAAATGATCAAGAAGTATCCACATTTGTTTCCGAGGAATTAA MLPVIFREAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIGFQRSKSMDYSTRKVLPSNEGLMSVVEYERKFTGFSKYATSIVIDKVNRCKRFVEELRSKIRTPVAVSVKWDKFSQVIKSRYESGGEFGKTSGGGRNECIIREEKVESKKCISRISKNNSSKSGVEQSVSTGVRILNLNKRPWCEDCRRYHTRRCFENWMFVMVVGVLRFGRKGKLSPRFIGPYEILERIGPVAYRLEMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIKKYPHLFPRN Homology
BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 172.9 bits (437), Expect = 4.5e-39 Identity = 90/124 (72.58%), Postives = 106/124 (85.48%), Query Frame = 0
BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 89.7 bits (221), Expect = 5.0e-14 Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 0
HSP 2 Score: 172.6 bits (436), Expect = 5.9e-39 Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0
BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0054352.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK12389.1 reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 170.6 bits (431), Expect = 2.2e-38 Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 0
BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0038428.1 (Chromo domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 169.9 bits (429), Expect = 3.8e-38 Identity = 85/126 (67.46%), Postives = 107/126 (84.92%), Query Frame = 0
BLAST of Clc01G12690 vs. NCBI nr
Match: KAA0042458.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK22918.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 169.5 bits (428), Expect = 5.0e-38 Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 0
BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 2.2e-39 Identity = 90/124 (72.58%), Postives = 106/124 (85.48%), Query Frame = 0
BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 2.4e-14 Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 0
HSP 2 Score: 172.6 bits (436), Expect = 2.8e-39 Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0
BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5A7UF07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001710 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.1e-38 Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 0
BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5A7T6E5 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003280 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 1.8e-38 Identity = 85/126 (67.46%), Postives = 107/126 (84.92%), Query Frame = 0
BLAST of Clc01G12690 vs. ExPASy TrEMBL
Match: A0A5D3DHF7 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00600 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 2.4e-38 Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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