Clc01G11420 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G11420
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionMediator of RNA polymerase II transcription subunit 11
LocationClcChr01: 17515032 .. 17519900 (-)
RNA-Seq ExpressionClc01G11420
SyntenyClc01G11420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTCAGTCCTATCTCCTCGATAATCACTATTTCATACATTTTCTCTCCACTCATCCTCGCATCACTAAGAGCTACTCGCTCGTCTCGCTGGTGATTAAAATGACACATATACTCACTGTCAGTTCACTCGTTCTCTTTGTTACGTTCTTAGGTTTCACACAACGTCAAAAAATAAAAATAAAAATAAAAAAATAAAATTGACTCACTTAAGTGCGATATTGATCGTCTACAATGATCCAACTGCCTTTATAACTTTATTTCTTCCAACACGTTCAATTCAATACAATGAGTTTTTTTTGTAGGGAAATTGAGGGAGTGAGGTTTAGTTTGTGTTTATTCTTTGTTAATAATAAAAAAAAAATTACTCCACTTACAAGCATTTGATTTGAAAGAATTATAAGAAATGTCAGCAAGTTCCCCAAATTGTGTATGTTAGTACAGAAGCATTAATTACAGATCAGGAGGAGGAAAGTGGCGCGTGAAAGTCTATTTTGTATGTATTATGTCTATCACGTTGGCTACTACCGAGTATCGAGTGTATCGTGGACTTTGTAATGTTCAATTTCAATCGTGGAACGTGTAACGGGAGCAACGAGTAATCGAGTATGACTAACGAGTTTCTGACTATCGAGGAGTGAGTTAGCACGTACTGAGTAATTGAGTCATTGGGCGTCGGGCATTGAGTAATCTGGACCTAGGCAGGCACGCGGATAGTTGTCAGGGACGAAGTTGAACTTTCACACGTAGCTGACGTAAGCCGAAGGCCCATCTTCATTCGTTTTTATAAAAATAGGCCAAAAACCGAATTGGCCTCTTGAGAAGGGCCATCCCTACAAAATTCCCTTCCGACCATTTCCCATTTTCGTTTTTTCTCTCACTCTCTCGTGCTTCACCGAGTCTACCTTTCTCCTTTCGTCCTCCGTTTCAGCATCCAAGTGTCGTCGCTGCCTCTCTTCCGTTCAATACTGCCGCTGCCGCCGCCGCCGCCTTTCTTCCGCTCGTGCCGCCGCTTCCTCCCTTCGAGCTGGTTTTCACATTTCTGATTTGCACTGATTTTCTACTATTTTGTGGTTTCTGGTATTCTCCTGATCTCCATCTATGCGTTTGTTCTCACATCAAAACACAAATTAGGACTTGTCTGATGCAATAATGGAGGAGTTGTTTTGATATATATATATATTACTCTTTTTTTTTCTCTTTTTTCTTTTTTTGTTAACATAAGTCGAACAGCAACGGAAAGCAAAAAACACCCTTGTAGCACTTATCGAACTTCCCTGTTCTACCTTCTCCATATGTCTGTCAATTTGGGATTTCATCATCTGTATATCCCTTTTGTCTTCTGGGAATTTGCTCTGTTTCTGCCACTGAATTATCCAGCAACTACCTTCTTCTTTATTTATCAGAGAATCATTCCAAGCAATACATTGAATTTATATAGTTCAATTATCTTATAATCCATAGCTTGTAGGAGTTATTTTATTTGTAGATTTGTACGTTATTGTTGGGGAGGGAGAAGACAATAATCACTCATACTTCGAATTTACTTGAAATAAAGAGCCATTTATGGCCGTCTATGTGCTTTGTACTTCATGTACCTTGATGTAAAAAATTATAGAAAATGTTCAAGGTACAATTAGCGTAGTTTAGAAAGGTGGAGGGATTAAAAGTGACTTGGAAGATTCTCCACTTATGGTCACTTTTATATACAGTATCAATGAATTTTATCTCATCATTGAATCCTATCTGAAACCTGTGATTGGTTGTGGCTCATAATTTGATGTTATTTCCAAAATTTTATTTGAATTCATCTGATTAGGAAATGCCCGCCAGTCATGGAAATTTAATTATAATACATTATTTCGATAATTTAAGTTTAATATGTTTTTAAATTGCTTGAGGCAAAATATATGAGGTTAACTGATATGTAAAACATTCAAAAAATGTTGTTTTTATGTAAATAATTTCATCTTGGGTATCAATAGCTTAAGTTTTCTAAATTGAGATGGTAACAGTTAGTAGGACACTATTTTAGCTTTATTTACTTATTCTTTTTATTTTGTTTTGTTCACAGATTAGTTTGTTTAAATTCCTTCGTTGCTGTGTGATTTATCAGGGCCAGCACAGTTCTTGATGGATCCGCCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGGTTGGAATAATTTTCCATTCCTTAAATATTTTGTTTCTAGTTCTTTGCACGGTCTTTATTGTGCACAAGATGCTTTTCTACCAACTTTTGTGTTTCATTCTGGCAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCCGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGTAAGCCCTCTGTGTATGACAGTGGTTCTTCACGTCAAATGATCTTTCAAATTTAGATAGGCTTATTGCCTCGTGTTGGGCGTCTGTGTTTAATGACTTTTGTACTTATTTGTTGGGTTTTATTCTTAAAACTTTTTCTTTCTCTATAGGTTGGCTGTTAGGGTCTGTTGGTTCCTTCTGTGCTTCACTTTTGTGTGTCCAACCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGCAATTGTTTATTTTTAATGTTCTGGTTAACCCTTCTTTCTTCTTTCATTTTTTTCTCCGTGGACGTTGGGTTCCTTTGGAGCAGTCACTTTTGTAGGTGAATTTTGACATTTATTTATTTATTATTATTTTTATTTATTTGATTTTTTCCCCTTTGATCGAATGATCTTTCAGGTTTAGTTTTAAGGGTTCTAGCAAACTTTCTTGGACTGGTATTGCTTGAGGTTTTCGTTTGTTTTCTTAGTTTGTTAATTATTTGATGGGGGATGGTGCTAACCATTATATTTCGGAGGATACTTGGGTGGGAAAAACCCCTTTGTGCTCTATTTCCTCAACTCTATCACTTGTTAGATAGTGCATGCATTCGATAGCCTTTGTCTTGCCTCTTTTGGTAGTTTCTTCCTCTTGTCCCTTAGTTTTCACCGTTCCCCTACCGACCGAGTTGTTGGCCTTCTTTCTATTGTTTCTGGTCAAGTAGTCCATCATGGGAGAAGGGATTCCAAGTTTTGGGCTCCAAGCCATCTAAGGGTTTCTCTGTAACTCTTTTTTTCATATTCTTTGCTCCCCTCCTCTCTGCTTGGGTGCCTTTGCATTCTCTTCTCTTTGGCAGGTTAAAATTTCCAAAAATGTAGAAGTCTTTGTCTGGCAAGTTCTGGATGGGAGAGTGAACTCACAAGATCGTCTCCAAAGAAATTAATCATTGGTGCCACAATCGCAATAGGGGTTGCTCTTCTTTGATTTGAGGAGGTGCTTATAAATTCTCCTTTCCATGATAAAGGAAGAGTTTTGTGGCAAGGTTTTCATTTTTTTTTTCCGGCTATTTGTTGGGGAATTCGGATGGAGAGGAACAATAGGACTTTTAGAGGGTGAGGGTCTAAGGGATTTGGATATGAGCCCTGTGAGTTAATGGTTTAATTCTTCATTATGGGCGTCCCTGGGAGTTAATGGTTTAATTCTTCATTATGGGCGTCCGTTATCAGCAGGGTCTCATTCTTTTAGATTGGAATCATTTCTTGTATTTTGCCTGGGGCTGTGCTGCTTTTGTTGGTTTGTTTTCTTTTCTTTTTATGATTTTGGTTTTCCCTTGTACCTTCTTTCATTCTTCTCAATGCAAGCTTGGTTTCTTATATAAAGAGAAAAACTGATCTTTCAAGTTTGGATTTGAAATTGGGTATTGAATCTGGAAAGGCTTCATTGTATAAATTAATCTCTGACAATTCAAGCATGTAATAGATTTTCATGGTAACTTCACTTGAAATTATCATGAAAAGCTTACATTCAAACAACTGATTTGCAAAATTTTGAACTTTGAACTTGATTAATTGTTGTTATTAAAGTATGTTATTATATTAAATTTAATCCTATCAGAAGTCCAGATAAAATTTTATAACAAAACGTGCTCTCCCTCATATCAGGTTCCTGCCAGGAAAAATATGGAATGAGTGTGTTGAGAGTATTACTGGGAACATTTGGGATATTGTTAGTGACATAATGCTTGCTAATTTGTGGTTAGTTTGTTAAGGTGAGTTGGTTGGAAGTTAGGGAGTGTAGAGGACGGGTATTGCTGCTGAATGATATTAATTTGTTAGCATTTGGTTCTCATAATCGAGATCCTATTCCTAGCATATTGTAGAGATTAATTAAAAGATAATTGTTTTGTGGTTGTTGGTATGCTTATTTTGAGTATTGTTGAAGATGGGGCATCATTATCGGATTTGGTGTTTCATAGGTAACAATGATAAGCTCTAATATTTAATTATAAGCGAAGAGTATGTCTGGATATATTTTCTTTTTAATATTCCACAACTCTCAAGTCTCAATAGTTCTCTAATTGGCGACATGTCAAAATTATTTTTAAAAATCTCGAAAGACTCCCCTTTTCTCTTTTTGGAAGAAGATGCATGATAGGTTTTTCTCTCACAAGTAAAGTAAATGTTTCATTTAAAAGTGTCTCAATACAATCCTAAATTTTACGTAAATCTTTTTAAATTATATGTGAGGAATAATGTGACACATTTTTCCTTCCTTGAAATCAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATATGTGATTTCGAAGTTGGATGGAATGGAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

mRNA sequence

ATGATTCTCAGTCCTATCTCCTCGATAATCACTATTTCATACATTTTCTCTCCACTCATCCTCGCATCACTAAGAGCTACTCGCTCGTCTCGCTGGGCCATCCCTACAAAATTCCCTTCCGACCATTTCCCATTTTCGTTTTTTCTCTCACTCTCTCGTGCTTCACCGAGTCTACCTTTCTCCTTTCGTCCTCCGTTTCAGCATCCAAGTGTCGTCGCTGCCTCTCTTCCGTTCAATACTGCCGCTGCCGCCGCCGCCGCCTTTCTTCCGCTCGTGCCGCCGCTTCCTCCCTTCGAGCTGGTTTTCACATTTCTGATTTGCACTGATTTTCTACTATTTTGTGGTTTCTGGTATTCTCCTGATCTCCATCTATGCGTTTGTTCTCACATCAAAACACAAATTAGGACTTGGCCAGCACAGTTCTTGATGGATCCGCCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCCGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATATGTGATTTCGAAGTTGGATGGAATGGAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

Coding sequence (CDS)

ATGATTCTCAGTCCTATCTCCTCGATAATCACTATTTCATACATTTTCTCTCCACTCATCCTCGCATCACTAAGAGCTACTCGCTCGTCTCGCTGGGCCATCCCTACAAAATTCCCTTCCGACCATTTCCCATTTTCGTTTTTTCTCTCACTCTCTCGTGCTTCACCGAGTCTACCTTTCTCCTTTCGTCCTCCGTTTCAGCATCCAAGTGTCGTCGCTGCCTCTCTTCCGTTCAATACTGCCGCTGCCGCCGCCGCCGCCTTTCTTCCGCTCGTGCCGCCGCTTCCTCCCTTCGAGCTGGTTTTCACATTTCTGATTTGCACTGATTTTCTACTATTTTGTGGTTTCTGGTATTCTCCTGATCTCCATCTATGCGTTTGTTCTCACATCAAAACACAAATTAGGACTTGGCCAGCACAGTTCTTGATGGATCCGCCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCGGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCCGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATATGTGATTTCGAAGTTGGATGGAATGGAACAAACTATTGATGAATATCAAGTGAAAATGGAAGATTCTTGA

Protein sequence

MILSPISSIITISYIFSPLILASLRATRSSRWAIPTKFPSDHFPFSFFLSLSRASPSLPFSFRPPFQHPSVVAASLPFNTAAAAAAAFLPLVPPLPPFELVFTFLICTDFLLFCGFWYSPDLHLCVCSHIKTQIRTWPAQFLMDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS
Homology
[Close]
BLAST of Clc01G11420 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-58
Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTID+YQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of Clc01G11420 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.5 bits (602), Expect = 2.6e-58
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of Clc01G11420 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 5.8e-58
Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVKMED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of Clc01G11420 vs. NCBI nr
Match: XP_038894867.1 (mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida] >XP_038894868.1 mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-57
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MD PTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDLPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLD M+QTIDEYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDAMKQTIDEYQVKMEDS 118

[Close]
BLAST of Clc01G11420 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 233.8 bits (595), Expect = 1.7e-57
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]
BLAST of Clc01G11420 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 9.0e-46
Identity = 84/111 (75.68%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEY 254
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEYV+++L+ ++QT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of Clc01G11420 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-59
Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDPP QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTID+YQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of Clc01G11420 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of Clc01G11420 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 8.1e-58
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY+ISKLDGM+QTIDEYQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]
BLAST of Clc01G11420 vs. ExPASy TrEMBL
Match: A0A6J1I6T5 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111471674 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 6.9e-57
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDP TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEYQVKMEDS 261
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEY+I KLDGM+QTIDEYQVKMED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of Clc01G11420 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 7.1e-54
Identity = 111/140 (79.29%), Postives = 116/140 (82.86%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 202
           MDPP  NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 203 -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVI 261
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY++
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of Clc01G11420 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-47
Identity = 84/111 (75.68%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 143 MDPPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 202
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 203 VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYVISKLDGMEQTIDEY 254
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEYV+++L+ ++QT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:
BLAST of Clc01G11420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442051.11.5e-5896.61PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]... [more]
XP_022927640.12.6e-5897.46mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos... [more]
XP_023520392.15.8e-5896.61mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep... [more]
XP_038894867.11.3e-5796.61mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida] >XP_0... [more]
XP_022142440.11.7e-5795.76mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP... [more]
BLAST of Clc01G11420 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ID779.0e-4675.68Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O... [more]
BLAST of Clc01G11420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B5G77.4e-5996.61Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G... [more]
A0A6J1EPJ11.3e-5897.46Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=... [more]
A0A6J1CKY48.1e-5895.76Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX... [more]
A0A6J1I6T56.9e-5794.92Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=36... [more]
A0A0A0L4507.1e-5479.29Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365... [more]
BLAST of Clc01G11420 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01435.16.4e-4775.68Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 150..255
e-value: 2.5E-13
score: 50.7
IPR019404Mediator complex, subunit Med11PANTHERPTHR22890UNCHARACTERIZEDcoord: 143..256
NoneNo IPR availableGENE3D1.10.287.3490coord: 149..216
e-value: 6.4E-6
score: 28.5
NoneNo IPR availablePANTHERPTHR22890:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11coord: 143..256

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G11420.1Clc01G11420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity