Clc01G01310 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G01310
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type E3 ubiquitin transferase
Location	ClcChr01: 1056777 .. 1059209 (-)
RNA-Seq Expression	Clc01G01310
Synteny	Clc01G01310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAAAAATGGATAGATGTTAGAGTTGCACAACATGATAAATTATCCAATCATAAATTATTATATAAAAATTATTTTTAAAAATGGATGCATCCAAATGCACCCAAAATATTGTTATTTATTATATAGTGTCTTTCATCTTATGCAATTCATTCAATTCCTTTCTTTTCAGAACTGGAGAGAGAGAGAGAGAAAATGCGGCCAACTCCTTTAGACGCTGACGACACCATCCGCTTCCAACCACCGCCATCGCCTCCGTGTCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGGCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGTCGCGGCAGTGCCGATGACGATCCGAGTGATAGCCGGCAGGAGGAACTTCCGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTCTCGGAGGAAATGAAACCGAAACTCGCCGGTGTGGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCAATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCTTCTGTGAGCGGCGGCGACGGCGGCAACCCCTGAGATTAGATTAGAAATGCCGGAATTCCTTCCGATAACCACCGTCGTAGCTGTTTGATAGCAGCTCGAGTTGAGCATTTGCTTTTTCTATTTTTATTTATTTTTCTTTTTAATTACGATTTACAATTACTTCTCCCCCATTTTTGTTCTCTTGCTCTCGAATTTTCCCGATCAGCTTAATTTTTTTTTTTAAAAAAAAATCCATTGACGGGGTCTGTTTTGGTAAGACCGTAAGAGGCGGAATTTTGTTTTTGAAAAATCACATAAAGTAATGAAATGCTTTACCCCTATAAATTGTAATAAAGCAGGAAAAAAAAAAGTATAAATTAGAATTAGGGTTGAGTTTTGAAACTTTGAATTCTCCATATAAATTCCTATTATTGAAGTCATTAGTTTTGCCCCGTGTCATGTAATAAATTTTCACATTTGATAGTATATACATCACCACCACGAGGATAAAGTTTCAAATGTAGTTCTTAAATTTCATGTTTATTTGTATATTCAGTTCAAAATTTTCAAATATTTTCAAAAGTGTCAAATATTTCATCTATTAATAATCTAGGCACCAAATAAATATAAATTTTGAAAATTGAGAAATTGAATTTGTAATGTGTAATGAATTTCATTAGTCTCAATTGAAATTTAAGAATTTTGGAAGTTATTTTAATAGTTTAGGCACCAACCAAGGGTATAAATAGGTAGCTAAAATCACATTATGTTTTCCATTTTAAAAAATTGCATTAAGAATTAATTTGAAGGTGATTGAATTCATATATCATGAAGTTCATCAAACTAGTTGGATTTTGTTTCACTTTCATCTCATTTTCACAAACTGGAATGATGAGAGAAAACTTCCTTCAACAGAGTGATGGTTGAATTTTGAATTTGTTTAGAAAAAGAAAAAGGATAAAAAGTGGAGAGTAAAGAATTGAGTGTAAGTATTAGTCGGACAAACATGTAGAGTTACTGAACGTTTATTTATTTATTTTTTTATTTGGAGTAATTAAGAAAAGGATGGAGAGGGGGGTGGAACGTCCAATCAGAGCGGGGGTTTAGGTAACGTTGGGCGTTGCTGGAAGCGCCACGTAAGGTCTGAGAAAGTAGCTAACGTGTGAAGTTTTGATGTTGTTGTGTGTTTCTTCACCTCAACAAACAAACTGTGTGCTTTTGGGAGTGGGACACAATTATTGCGTCCACAGATTTAGTTCTTTCTTTTCTAAACAAAAATTCCAAAACGCCAAAAAGTTAAAAATCCATCATGTGGGTGTCAGATTTTATCCTCTCTCGCGCTATAAACACACAACCTAACTCTTGCTGATGGCCCCATCGCTCACTTTTAACCCTCTCAAACCCACTCCCCCAACAAATCTTATACGCCTTTATCATTCAAAATCAATGTTTAGATTTATCGTTTTGGATTCGATTTGTAAATAATTTCTAAACTCTAGACACCTTTATAATTCCTACATTTATTATTATAATTCTGTTTGAAGTGTAAATTATTTTAATATGGATTTGGATAGCTTGTGTTTGAGTTGGTATAAGCTATTTAAGTCTAAGTTTAGAAAGTTTGTGTTTGTAGTGTATATTATTTTAGTCCTAAATTGAGGGTGGTGTGTGTTTGTGCTATTCATTTGTTTAACCTGAAGTTTTTGAGTGTGAGTTTAAGGTTGTGATAGAAACACTTTTT

mRNA sequence

CATAAAAATGGATAGATGTTAGAGTTGCACAACATGATAAATTATCCAATCATAAATTATTATATAAAAATTATTTTTAAAAATGGATGCATCCAAATGCACCCAAAATATTGTTATTTATTATATAGTGTCTTTCATCTTATGCAATTCATTCAATTCCTTTCTTTTCAGAACTGGAGAGAGAGAGAGAGAAAATGCGGCCAACTCCTTTAGACGCTGACGACACCATCCGCTTCCAACCACCGCCATCGCCTCCGTGTCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGGCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGTCGCGGCAGTGCCGATGACGATCCGAGTGATAGCCGGCAGGAGGAACTTCCGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTCTCGGAGGAAATGAAACCGAAACTCGCCGGTGTGGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCAATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCTTCTGTGAGCGGCGGCGACGGCGGCAACCCCTGAGATTAGATTAGAAATGCCGGAATTCCTTCCGATAACCACCGTCGTAGCTGTTTGATAGCAGCTCGAGTTGAGCATTTGCTTTTTCTATTTTTATTTATTTTTCTTTTTAATTACGATTTACAATTACTTCTCCCCCATTTTTGTTCTCTTGCTCTCGAATTTTCCCGATCAGCTTAATTTTTTTTTTTAAAAAAAAATCCATTGACGGGGTCTGTTTTGGTAAGACCGTAAGAGGCGGAATTTTGTTTTTGAAAAATCACATAAAGTAATGAAATGCTTTACCCCTATAAATTGTAATAAAGCAGGAAAAAAAAAAGTATAAATTAGAATTAGGGTTGAGTTTTGAAACTTTGAATTCTCCATATAAATTCCTATTATTGAAGTCATTAGTTTTGCCCCGTGTCATGTAATAAATTTTCACATTTGATAGTATATACATCACCACCACGAGGATAAAGTTTCAAATGTAGTTCTTAAATTTCATGTTTATTTGTATATTCAGTTCAAAATTTTCAAATATTTTCAAAAGTGTCAAATATTTCATCTATTAATAATCTAGGCACCAAATAAATATAAATTTTGAAAATTGAGAAATTGAATTTGTAATGTGTAATGAATTTCATTAGTCTCAATTGAAATTTAAGAATTTTGGAAGTTATTTTAATAGTTTAGGCACCAACCAAGGGTATAAATAGGTAGCTAAAATCACATTATGTTTTCCATTTTAAAAAATTGCATTAAGAATTAATTTGAAGGTGATTGAATTCATATATCATGAAGTTCATCAAACTAGTTGGATTTTGTTTCACTTTCATCTCATTTTCACAAACTGGAATGATGAGAGAAAACTTCCTTCAACAGAGTGATGGTTGAATTTTGAATTTGTTTAGAAAAAGAAAAAGGATAAAAAGTGGAGAGTAAAGAATTGAGTGTAAGTATTAGTCGGACAAACATGTAGAGTTACTGAACGTTTATTTATTTATTTTTTTATTTGGAGTAATTAAGAAAAGGATGGAGAGGGGGGTGGAACGTCCAATCAGAGCGGGGGTTTAGGTAACGTTGGGCGTTGCTGGAAGCGCCACGTAAGGTCTGAGAAAGTAGCTAACGTGTGAAGTTTTGATGTTGTTGTGTGTTTCTTCACCTCAACAAACAAACTGTGTGCTTTTGGGAGTGGGACACAATTATTGCGTCCACAGATTTAGTTCTTTCTTTTCTAAACAAAAATTCCAAAACGCCAAAAAGTTAAAAATCCATCATGTGGGTGTCAGATTTTATCCTCTCTCGCGCTATAAACACACAACCTAACTCTTGCTGATGGCCCCATCGCTCACTTTTAACCCTCTCAAACCCACTCCCCCAACAAATCTTATACGCCTTTATCATTCAAAATCAATGTTTAGATTTATCGTTTTGGATTCGATTTGTAAATAATTTCTAAACTCTAGACACCTTTATAATTCCTACATTTATTATTATAATTCTGTTTGAAGTGTAAATTATTTTAATATGGATTTGGATAGCTTGTGTTTGAGTTGGTATAAGCTATTTAAGTCTAAGTTTAGAAAGTTTGTGTTTGTAGTGTATATTATTTTAGTCCTAAATTGAGGGTGGTGTGTGTTTGTGCTATTCATTTGTTTAACCTGAAGTTTTTGAGTGTGAGTTTAAGGTTGTGATAGAAACACTTTTT

Coding sequence (CDS)

ATGCGGCCAACTCCTTTAGACGCTGACGACACCATCCGCTTCCAACCACCGCCATCGCCTCCGTGTCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGGCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGTCGCGGCAGTGCCGATGACGATCCGAGTGATAGCCGGCAGGAGGAACTTCCGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTCTCGGAGGAAATGAAACCGAAACTCGCCGGTGTGGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCAATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCTTCTGTGAGCGGCGGCGACGGCGGCAACCCCTGA

Protein sequence

MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDGGNP

Homology

[Close]

BLAST of Clc01G01310 vs. NCBI nr
Match: XP_038875287.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 355.5 bits (911), Expect = 2.7e-94
Identity = 175/184 (95.11%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDT+ FQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVAFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRGSADDDPSDSRQEEL DETKPTLVDKLKMAPALVFS E KPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSAETKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEF EGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSP SSVSGGDG
Sbjct: 121 CTICLTEFLEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPPSSVSGGDG 180

Query: 181 -GNP 184
            GNP
Sbjct: 181 DGNP 184

[Close]

BLAST of Clc01G01310 vs. NCBI nr
Match: XP_004145965.1 (RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein Csa_000591 [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 8.7e-93
Identity = 170/183 (92.90%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDT+RFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++DDD SDSRQEELP+ETKPTL+DKLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS SGGD 
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGD- 180

Query: 181 GNP 184
           GNP
Sbjct: 181 GNP 182

[Close]

BLAST of Clc01G01310 vs. NCBI nr
Match: XP_008437481.1 (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa] >TYK06025.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa])

HSP 1 Score: 349.0 bits (894), Expect = 2.5e-92
Identity = 170/183 (92.90%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++DDD +DSRQEEL +ETKPTLV+KLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGD 
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD- 180

Query: 181 GNP 184
           GNP
Sbjct: 181 GNP 182

[Close]

BLAST of Clc01G01310 vs. NCBI nr
Match: KAG7017072.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 164/181 (90.61%), Postives = 171/181 (94.48%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL DETKPTLVDKLKMAPALVFS E+KPKLAG EA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of Clc01G01310 vs. NCBI nr
Match: XP_022928967.1 (RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 166/185 (89.73%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL DETKPTLVDKLKMAPALVFS E+KPKLAG EA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 G-GNP 184
           G G+P
Sbjct: 181 GDGDP 185

[Close]

BLAST of Clc01G01310 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.9e-32
Identity = 76/161 (47.20%), Postives = 100/161 (62.11%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDP 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR     +DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDD- 76

Query: 79  SDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S ++  +LAG EAEC ICL+EF +GE I+VL 
Sbjct: 77  -HKPDPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLILHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL   SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]

BLAST of Clc01G01310 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-23
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSDSRQEELPDETKP 94
           N    + +  +++  LLC LICAL +N+ +RC LR  RR + ++DP D+      +  K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN----ANVAKG 92

Query: 95  TLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 154
                LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  IKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 155 LILHSSCPTCRRSYLP-PSPSSSVSGGD 180
           L+ HSSCPTCR+S L   +P++    GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of Clc01G01310 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-22
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSD--SRQEELPDET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR  RR ++DD  S+  +    L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQC 154
             T + K  LK  P  ++   +    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLILHSSCPTCRRSYLPPSPS 173
           I TWL+  SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of Clc01G01310 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-22
Identity = 54/132 (40.91%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELPDETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR    ++  PS++  +  P    
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---CSNLVPSEAGGDNYPVRLT 104

Query: 92  PTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
            T V +  +      S   +  L G++ EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 164
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

[Close]

BLAST of Clc01G01310 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-20
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRC-FLRRRGSADDDPSDSRQEELPDETKPT 94
           +  +   N  +++ ILLCG+IC+L L+  IRC F+R R     DP       +P   + +
Sbjct: 44  DKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPI-----SIPSTPRDS 103

Query: 95  LVDK------LKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQ 154
            V+K      LKM P + +S E+   L GV  EC ICL++F  GE++RVL  C HGFH++
Sbjct: 104 SVNKGIKKKALKMLPVVNYSPEI--NLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLR 163

Query: 155 CIQTWLILHSSCPTCR 164
           CI  WL  H +CP CR
Sbjct: 164 CIDKWLTQHMTCPKCR 172

[Close]

BLAST of Clc01G01310 vs. ExPASy TrEMBL
Match: A0A0A0KNJ7 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.2e-93
Identity = 170/183 (92.90%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDT+RFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++DDD SDSRQEELP+ETKPTL+DKLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS SGGD 
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGD- 180

Query: 181 GNP 184
           GNP
Sbjct: 181 GNP 182

[Close]

BLAST of Clc01G01310 vs. ExPASy TrEMBL
Match: A0A5D3C3S3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001240 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 170/183 (92.90%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++DDD +DSRQEEL +ETKPTLV+KLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGD 
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD- 180

Query: 181 GNP 184
           GNP
Sbjct: 181 GNP 182

[Close]

BLAST of Clc01G01310 vs. ExPASy TrEMBL
Match: A0A1S3AU49 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 170/183 (92.90%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++DDD +DSRQEEL +ETKPTLV+KLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGD 
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGD- 180

Query: 181 GNP 184
           GNP
Sbjct: 181 GNP 182

[Close]

BLAST of Clc01G01310 vs. ExPASy TrEMBL
Match: A0A6J1ELF7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.3e-89
Identity = 166/185 (89.73%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL DETKPTLVDKLKMAPALVFS E+KPKLAG EA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 G-GNP 184
           G G+P
Sbjct: 181 GDGDP 185

[Close]

BLAST of Clc01G01310 vs. ExPASy TrEMBL
Match: A0A6J1I2W6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 163/180 (90.56%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPP-PSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDT+ ++PP P PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSYRPPSPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL DETKPTLVDKLKMAPALVFSEEMKPKLAG EA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSEEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of Clc01G01310 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 6.3e-33
Identity = 76/161 (47.20%), Postives = 100/161 (62.11%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDP 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR     +DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDD- 76

Query: 79  SDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S ++  +LAG EAEC ICL+EF +GE I+VL 
Sbjct: 77  -HKPDPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLILHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL   SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]

BLAST of Clc01G01310 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 9.4e-29
Identity = 72/158 (45.57%), Postives = 89/158 (56.33%), Query Frame = 0


Query: 15  QPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSA 74
           QP  +  C    +C W+PYS+S DF ANA +++IIL C  IC L+L+ AIRC LR     
Sbjct: 10  QPELTSTCTS-HSCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLRPVLQH 69

Query: 75  DDDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEI 134
              P    +   PD             P LV+S  +   LAG EAEC ICL+EF +G+ +
Sbjct: 70  VPKPDPDLEATHPD-----------APPTLVYSPGL--NLAGNEAECIICLSEFQDGDTL 129

Query: 135 RVLAICKHGFHVQCIQTWL-ILHSSCPTCRRSYLPPSP 172
           RVL  CKHGFHV CIQ WL   HSSCPTCR +     P
Sbjct: 130 RVLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]

BLAST of Clc01G01310 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 8.2e-25
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSDSRQEELPDETKP 94
           N    + +  +++  LLC LICAL +N+ +RC LR  RR + ++DP D+      +  K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN----ANVAKG 92

Query: 95  TLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 154
                LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  IKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 155 LILHSSCPTCRRSYLP-PSPSSSVSGGD 180
           L+ HSSCPTCR+S L   +P++    GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of Clc01G01310 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-23
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSD--SRQEELPDET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR  RR ++DD  S+  +    L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQC 154
             T + K  LK  P  ++   +    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLILHSSCPTCRRSYLPPSPS 173
           I TWL+  SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of Clc01G01310 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-23
Identity = 54/132 (40.91%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELPDETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR    ++  PS++  +  P    
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---CSNLVPSEAGGDNYPVRLT 104

Query: 92  PTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
            T V +  +      S   +  L G++ EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 164
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

The following BLAST results are available for this feature:

BLAST of Clc01G01310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875287.1	2.7e-94	95.11	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_004145965.1	8.7e-93	92.90	RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein ...	[more]
XP_008437481.1	2.5e-92	92.90	PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H...	[more]
KAG7017072.1	1.3e-88	90.61	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022928967.1	1.3e-88	89.73	RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 fin...	[more]

BLAST of Clc01G01310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ6	8.9e-32	47.20	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9FLC6	1.2e-23	42.57	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	1.7e-22	43.75	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q6NQG7	2.2e-22	40.91	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9LS99	2.7e-20	40.44	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]

BLAST of Clc01G01310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNJ7	4.2e-93	92.90	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE...	[more]
A0A5D3C3S3	1.2e-92	92.90	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AU49	1.2e-92	92.90	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 ...	[more]
A0A6J1ELF7	6.3e-89	89.73	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709...	[more]
A0A6J1I2W6	1.1e-88	90.56	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 P...	[more]

BLAST of Clc01G01310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47610.1	6.3e-33	47.20	RING/U-box superfamily protein	[more]
AT4G17245.1	9.4e-29	45.57	RING/U-box superfamily protein	[more]
AT5G05280.1	8.2e-25	42.57	RING/U-box superfamily protein	[more]
AT3G10910.1	1.2e-23	43.75	RING/U-box superfamily protein	[more]
AT1G49230.1	1.6e-23	40.91	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..162 e-value: 1.2E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 120..163 e-value: 2.4E-12 score: 47.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 121..163 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 79..168 e-value: 1.6E-19 score: 71.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..92
None	No IPR available	PANTHER	PTHR46905:SF1	RING-H2 FINGER PROTEIN ATL79-LIKE	coord: 15..176
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 120..169
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 15..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G01310.1	Clc01G01310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity