Cla97C11G223420 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G223420
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr11: 29261102 .. 29261374 (+)
RNA-Seq ExpressionCla97C11G223420
SyntenyCla97C11G223420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGCAGCAAAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTGTGCCAAGCACACATGAGCTTGGGAATAAGGAAGTTATCCAAGAAGGAGATGAAGATGGCTTCAATGGGGGCCATCGGTGTCGACATGCTTCTCGGCGCTCTTCCGAGAGGCCCGACGCCCCCTTCTGCCCCTAGCGAGCGAGGCAATCCTGCTCCTTTTGGTGATGGCAATCGTATCTTGGTATCTGCCCCAAGCCCTATAACAGGTCGTCACTAA

mRNA sequence

ATGATGGGCAGCAAAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTGTGCCAAGCACACATGAGCTTGGGAATAAGGAAGTTATCCAAGAAGGAGATGAAGATGGCTTCAATGGGGGCCATCGGTGTCGACATGCTTCTCGGCGCTCTTCCGAGAGGCCCGACGCCCCCTTCTGCCCCTAGCGAGCGAGGCAATCCTGCTCCTTTTGGTGATGGCAATCGTATCTTGGTATCTGCCCCAAGCCCTATAACAGGTCGTCACTAA

Coding sequence (CDS)

ATGATGGGCAGCAAAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTGTGCCAAGCACACATGAGCTTGGGAATAAGGAAGTTATCCAAGAAGGAGATGAAGATGGCTTCAATGGGGGCCATCGGTGTCGACATGCTTCTCGGCGCTCTTCCGAGAGGCCCGACGCCCCCTTCTGCCCCTAGCGAGCGAGGCAATCCTGCTCCTTTTGGTGATGGCAATCGTATCTTGGTATCTGCCCCAAGCCCTATAACAGGTCGTCACTAA

Protein sequence

MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIGVDMLLGALPRGPTPPSAPSERGNPAPFGDGNRILVSAPSPITGRH
Homology
BLAST of Cla97C11G223420 vs. NCBI nr
Match: KAA0066754.1 (hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK27901.1 hypothetical protein E5676_scaffold384G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 4.8e-28
Identity = 72/88 (81.82%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 1  MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIGVDMLLGALPRGPTPP 60
          MMGS+KFIMVALLVVA VLCQAHMSLGIRKLS KEMKM  MG     MLLGALP+GPTPP
Sbjct: 1  MMGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFGDGNRILVSAPSPITG 89
          SAPSERGNPAPF DG+R+LVSAPSP  G
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIG 88

BLAST of Cla97C11G223420 vs. NCBI nr
Match: KGN55050.1 (hypothetical protein Csa_012928 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 9.1e-27
Identity = 71/88 (80.68%), Postives = 75/88 (85.23%), Query Frame = 0

Query: 1  MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIGVDMLLGALPRGPTPP 60
          MMGSKK IMVALLVVALVL QAHMSLGIRKLS KEMKM  +G     MLLGALP+GPTPP
Sbjct: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFGDGNRILVSAPSPITG 89
          SAPSERGNPAPF DG+R+LVSAPSP  G
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIG 88

BLAST of Cla97C11G223420 vs. NCBI nr
Match: KAG6607932.1 (hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 9.7e-13
Identity = 43/74 (58.11%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 2  MGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIGVDMLLGALPRGPTPPS 61
          M +KKF M A L +A +LCQ H +L IR    K+ K+ SMG +  DMLLG+LPRGP PPS
Sbjct: 1  MCTKKFTMAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPS 60

Query: 62 APSERGNPAPFGDG 76
          APS R NPAPF  G
Sbjct: 61 APSNRENPAPFSGG 74

BLAST of Cla97C11G223420 vs. ExPASy TrEMBL
Match: A0A5A7VHE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00860 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-28
Identity = 72/88 (81.82%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 1  MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIGVDMLLGALPRGPTPP 60
          MMGS+KFIMVALLVVA VLCQAHMSLGIRKLS KEMKM  MG     MLLGALP+GPTPP
Sbjct: 1  MMGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFGDGNRILVSAPSPITG 89
          SAPSERGNPAPF DG+R+LVSAPSP  G
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIG 88

BLAST of Cla97C11G223420 vs. ExPASy TrEMBL
Match: A0A0A0KZH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.4e-27
Identity = 71/88 (80.68%), Postives = 75/88 (85.23%), Query Frame = 0

Query: 1  MMGSKKFIMVALLVVALVLCQAHMSLGIRKLSKKEMKMASMGAIGVDMLLGALPRGPTPP 60
          MMGSKK IMVALLVVALVL QAHMSLGIRKLS KEMKM  +G     MLLGALP+GPTPP
Sbjct: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFGDGNRILVSAPSPITG 89
          SAPSERGNPAPF DG+R+LVSAPSP  G
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIG 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066754.14.8e-2881.82hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK2790... [more]
KGN55050.19.1e-2780.68hypothetical protein Csa_012928 [Cucumis sativus][more]
KAG6607932.19.7e-1358.11hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VHE02.3e-2881.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZH34.4e-2780.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G223420.1Cla97C11G223420.1mRNA