Cla97C11G214230 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G214230
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionZinc finger HIT domain-containing protein 2 isoform X2
LocationCla97Chr11: 7709436 .. 7711051 (-)
RNA-Seq ExpressionCla97C11G214230
SyntenyCla97C11G214230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGACCGTGGAAATACATCCCACTCAGCCAAAGAAAGATGATGGAGAGTTGGCCGAAATGGGCACTAAATACTTTTCGAGAGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCATGAAGGTTCCAGATCCAAGTGGTAGTATCAGGACCCTTAGCTATTGTTCTCGAGAAATGACCCGGTCTGGCCCATTCCTCGAAAGAAGTTTTTACGGGATCCCTATCTACCAAAATTTTGACTTCTGGTTCCGACAATCTATGTTTTTCAGGTCCTTCTGCACTCACTTTGTGCTTATTCTTTTTTAGAAACATATTCTTTTGCGCAGCATTAGTCTTTTCAGACTGCTGTTCAAGTCTCTTTTCAGCTTCTGCCTAAAGAAAATGGTCAGATCAATCATAGAACAAGGAGGAGTTTCACAGAGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATTATTGGCTTGGTCAGCCTTTACCTGACCAACGACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTTAGCTTTCTTCAGGATTTGGCCCGAACTGCTCATTACTTTATTTCCTCTATGAGGGAAAAAGAAAAGTAATAAACCCGCAAATATTGGAAAAACTACAACTGTTGTTAACCAAGGAAAATAATTCGTAGTAAAAACAAGATACACTTGGACTAAAAAAACCCATGTTCGAAAATGAAATAAAAAAATATATATGTATATTTATTTTCGAGCACGAGTTTTTGCCATGTTGAGCTGTCTCAACTGGATCAATAGCTTTGTTTTCCACCAGAAACTAATCTTCCCTGGTCTAAGGCAACATAACAGGAACAGGATGTGAGGCTTTGCCGAATGTGATTGTTATTTTTCTATATATAGCTGAAATAAACCTTCTTTTGAGAGGGAGTAAAAGTCCAACATTTACCTTCCCGCCGAGTAAGAAAATTGGCTTCCTTTGTCTCACGCAGGAAAGCATGAACTCTAGTTAGTCTGATGCGTAGAAGCATCTTATGACAATCTTCTTCCGTTAATGCTGTAATCATATCAGCAACTATAGATCCAGAAGATTGTATCGCTACCATATCTGCATAACCTGGACTCTCATACCAGATGATAACAATCTTTAGCTGAAAGAAAGAACAAATTTCTAGGAATGTGCAGAGCTGAGACCTGCTGTTGTTGGGATAAGATCAATTTCTATCTATATAAGATATTTTCTATCTCTATAAAAAAGATAGATTATATATCAGATCACGGCTCCATGTGCCAAATATTTCCATATTGATACATATTCAATTTTTGTTCCAACAATGTGACGAAGAATGGAGACGAGAACGATACATTCATTTACCGGCGGGTTCAACTGGCCTAAGAAGTGAGATAAACACTCTTTTTAGGTTAGGAAGGAGCAAGCCTTTTAGACTATGGAAGTCAAGCCCGCAGAGCAGTCACAAAGAATAGGTTGTATTCACTGGAACAAGAATCACCTTCATCTCCTCGGAAGGGCTTATTATTGTTCGTCTACAAATATCCAAATTTTTATACCTAA

mRNA sequence

ATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGACCGTGGAAATACATCCCACTCAGCCAAAGAAAGATGATGGAGAGTTGGCCGAAATGGGCACTAAATACTTTTCGAGAGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCATGAAGGTTCCAGATCCAAGTGGTAGTATCAGGACCCTTAGCTATTGTTCTCGAGAAATGACCCGGTCTGGCCCATTCCTCGAAAGAACTGAAATAAACCTTCTTTTGAGAGGGAGTAAAAGTCCAACATTTACCTTCCCGCCGAGTAAGAAAATTGGCTTCCTTTGTCTCACGCAGGAAAGCATGAACTCTAGAGCAAGCCTTTTAGACTATGGAAGTCAAGCCCGCAGAGCAGTCACAAAGAATAGGTTGTATTCACTGGAACAAGAATCACCTTCATCTCCTCGGAAGGGCTTATTATTGTTCGTCTACAAATATCCAAATTTTTATACCTAA

Coding sequence (CDS)

ATGCCCGAAGTCGTTACCTTAACCGCAAGGAGGACCGTGGAAATACATCCCACTCAGCCAAAGAAAGATGATGGAGAGTTGGCCGAAATGGGCACTAAATACTTTTCGAGAGATCTCCTCCAAATCACTAGTATGGCTATCGAAATCGTGAGCATCAGCATGAAGGTTCCAGATCCAAGTGGTAGTATCAGGACCCTTAGCTATTGTTCTCGAGAAATGACCCGGTCTGGCCCATTCCTCGAAAGAACTGAAATAAACCTTCTTTTGAGAGGGAGTAAAAGTCCAACATTTACCTTCCCGCCGAGTAAGAAAATTGGCTTCCTTTGTCTCACGCAGGAAAGCATGAACTCTAGAGCAAGCCTTTTAGACTATGGAAGTCAAGCCCGCAGAGCAGTCACAAAGAATAGGTTGTATTCACTGGAACAAGAATCACCTTCATCTCCTCGGAAGGGCTTATTATTGTTCGTCTACAAATATCCAAATTTTTATACCTAA

Protein sequence

MPEVVTLTARRTVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISMKVPDPSGSIRTLSYCSREMTRSGPFLERTEINLLLRGSKSPTFTFPPSKKIGFLCLTQESMNSRASLLDYGSQARRAVTKNRLYSLEQESPSSPRKGLLLFVYKYPNFYT
Homology
[Close]
BLAST of Cla97C11G214230 vs. NCBI nr
Match: GGX41185.1 (hypothetical protein GCM10010297_69120 [Streptomyces malachitofuscus] >GHA79121.1 hypothetical protein GCM10010345_94920 [Streptomyces canarius])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 13 VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM 55
          +EIH  QPKKDDGELAEMGTKYF+RDLLQIT MAIEIVSI M
Sbjct: 1  MEIHAAQPKKDDGELAEMGTKYFARDLLQITGMAIEIVSIGM 42

[Close]
BLAST of Cla97C11G214230 vs. NCBI nr
Match: PWA71870.1 (hypothetical protein CTI12_AA234240 [Artemisia annua])

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-08
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 12 TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIV 51
          TVEIH TQPK+DDGEL EM TKYFSRDLLQIT MAIEIV
Sbjct: 3  TVEIHATQPKEDDGELTEMCTKYFSRDLLQITGMAIEIV 41

[Close]
BLAST of Cla97C11G214230 vs. NCBI nr
Match: CAN82922.1 (hypothetical protein VITISV_033139 [Vitis vinifera])

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-08
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 13  VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEI 50
           VEIH TQPKKDDGEL EMGTKYF RDLLQIT MAIEI
Sbjct: 344 VEIHATQPKKDDGELPEMGTKYFLRDLLQITGMAIEI 380

[Close]
BLAST of Cla97C11G214230 vs. NCBI nr
Match: PHU07186.1 (Ribulose bisphosphate carboxylase large chain [Capsicum chinense])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 12 TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISMKVPDPSGSIRTLSYCSR 71
          T+EIH  QPKKDDGEL EM TKYFSRDLLQI  MAI+IV+I++ V +   +  TL Y ++
Sbjct: 3  TMEIHAAQPKKDDGELNEMYTKYFSRDLLQINGMAIKIVTINI-VKEYKLTYYTLEYQTK 62

Query: 72 E 73
          +
Sbjct: 63 D 62

[Close]
BLAST of Cla97C11G214230 vs. NCBI nr
Match: GEU86977.1 (zinc finger HIT domain-containing protein 2 isoform X2 [Tanacetum cinerariifolium])

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-06
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 20  PKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM 55
           PK+DDGEL EM TKYFSRDLLQIT MAIEIVSISM
Sbjct: 137 PKEDDGELTEMRTKYFSRDLLQITGMAIEIVSISM 171

[Close]
BLAST of Cla97C11G214230 vs. ExPASy TrEMBL
Match: F6HXM6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g08340 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-10
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 12  TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM 55
           TVEIH TQPKKDDGEL EMGTKYFSRDLLQI  MAIEIVSI+M
Sbjct: 67  TVEIHATQPKKDDGELPEMGTKYFSRDLLQIIGMAIEIVSINM 109

[Close]
BLAST of Cla97C11G214230 vs. ExPASy TrEMBL
Match: A0A2U1NEI7 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA234240 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 12 TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIV 51
          TVEIH TQPK+DDGEL EM TKYFSRDLLQIT MAIEIV
Sbjct: 3  TVEIHATQPKEDDGELTEMCTKYFSRDLLQITGMAIEIV 41

[Close]
BLAST of Cla97C11G214230 vs. ExPASy TrEMBL
Match: A5B6Y9 (ATPase_AAA_core domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_033139 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-08
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 13  VEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEI 50
           VEIH TQPKKDDGEL EMGTKYF RDLLQIT MAIEI
Sbjct: 344 VEIHATQPKKDDGELPEMGTKYFLRDLLQITGMAIEI 380

[Close]
BLAST of Cla97C11G214230 vs. ExPASy TrEMBL
Match: A0A2G3BL41 (Ribulose bisphosphate carboxylase large chain OS=Capsicum chinense OX=80379 GN=BC332_23675 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 12 TVEIHPTQPKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISMKVPDPSGSIRTLSYCSR 71
          T+EIH  QPKKDDGEL EM TKYFSRDLLQI  MAI+IV+I++ V +   +  TL Y ++
Sbjct: 3  TMEIHAAQPKKDDGELNEMYTKYFSRDLLQINGMAIKIVTINI-VKEYKLTYYTLEYQTK 62

Query: 72 E 73
          +
Sbjct: 63 D 62

[Close]
BLAST of Cla97C11G214230 vs. ExPASy TrEMBL
Match: A0A6L2NMW0 (Zinc finger HIT domain-containing protein 2 isoform X2 OS=Tanacetum cinerariifolium OX=118510 GN=Tci_058955 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 20  PKKDDGELAEMGTKYFSRDLLQITSMAIEIVSISM 55
           PK+DDGEL EM TKYFSRDLLQIT MAIEIVSISM
Sbjct: 137 PKEDDGELTEMRTKYFSRDLLQITGMAIEIVSISM 171

The following BLAST results are available for this feature:
BLAST of Cla97C11G214230 vs. NCBI nr
Match NameE-valueIdentityDescription
GGX41185.11.1e-0985.71hypothetical protein GCM10010297_69120 [Streptomyces malachitofuscus] >GHA79121.... [more]
PWA71870.13.5e-0887.18hypothetical protein CTI12_AA234240 [Artemisia annua][more]
CAN82922.17.7e-0889.19hypothetical protein VITISV_033139 [Vitis vinifera][more]
PHU07186.12.2e-0759.02Ribulose bisphosphate carboxylase large chain [Capsicum chinense][more]
GEU86977.14.2e-0688.57zinc finger HIT domain-containing protein 2 isoform X2 [Tanacetum cinerariifoliu... [more]
BLAST of Cla97C11G214230 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C11G214230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
F6HXM61.0e-1088.37Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g08340 PE=4 SV=... [more]
A0A2U1NEI71.7e-0887.18Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA234240 PE=4 SV=1[more]
A5B6Y93.7e-0889.19ATPase_AAA_core domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_0... [more]
A0A2G3BL411.1e-0759.02Ribulose bisphosphate carboxylase large chain OS=Capsicum chinense OX=80379 GN=B... [more]
A0A6L2NMW02.0e-0688.57Zinc finger HIT domain-containing protein 2 isoform X2 OS=Tanacetum cinerariifol... [more]
BLAST of Cla97C11G214230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G214230.1Cla97C11G214230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009536 plastid
cellular_component GO:0009579 thylakoid
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0016829 lyase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity