Cla97C05G093995 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C05G093995
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	MADS-box domain-containing protein
Location	Cla97Chr05: 14340258 .. 14341452 (-)
RNA-Seq Expression	Cla97C05G093995
Synteny	Cla97C05G093995

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAATGACAAAATGACCGACGCGCAATTTAACGGCAAGAAGACGACCGACGGAAATTAAAGCGTTAAAGAAGATGACTGGCGCGCAATTAAACGGTAAGAAGATGACGGCGAGAAAGTCAAAAGTAAGAAGATAAGTGGCGGGAAATTAAACGGTAACAAGGTGACCGGCGCATAACTTAAACGGTAAGAAGATGACCGGCGCGCATTCGGACAGTAACAAAAAGGGGGGAGCGCAATGAAACGGTAAAATCGCAGACCCATTTGGTTGAATTCTGTGTGACTCCCGCCGACGACTCTCTCTCTCTGTTTCTCTGTGAATTTACAAACCCATTTGGTCGAGTCGTCTGAGACTTCCGTCGACGGCAATCTCTCTCTCTCTGTTTCTCGGTGAATTCCCAAACCCATTTGGTTGAATCGTCTGAGACTTCCGTCGACGGCAATCTCTCTCTCTGTTTCTCTCTGTTTCTCTGCGTTCTTGGTTTTCTGAGATTGAAGAACAATGGGCAGAGGAATATTGAGCCTTAAACTCATTCCTAATCTCAAATCTCGCAGAACAACCTTTTTGAAGAGGAAGAAAAGCCTGATGAAGAAGGCATACGAGCTCTCCACCCTTTGCGATGCTCAAACCTGTGTTTTCATTGCTTCTGATTGTGACCCAGCCGCCCAGTTCGAAACTTGGCCTCCCAATCGAGACCAAATACACACTATGATCCGTTCCTACAAATCCCACTCTTTCCTCAAACAATCCCGCAACTCCTCTTATGATCTCAACCGATTCTTGTCCGATCGCAAAAACAAAATCGTAACAGACACGGCAAAATTGCGCCACAATGTTGATAAATTCAAGGATCACAACCTTGATTCTCTATCAGAAGATCAACTGAAGGATTTTTTGGCCACTTTGGATTCCAAAATTGGAGTTGTAGACGACATGATTCAGTTCATGGAGGCCGATTATGATTACTTGATTGAGGAAGTTATTGGCACACCATCATTTTGTCCCTTCGAAACAGAGGAATCCTGTGAATACAATGTCGAGGATTTTCAATCTCTGTTGGAGGATGAGTTTCTCGGAGCCCTGGTTCAGAACCATCCCTTTAATTTTGATTCTGAACTCATTGCATAGTTTCTCCATGAGAGTTTTCTCGCTCTCTTATTCTCTGTAAATGTATTGATTTTAGCATAATAGAAA

mRNA sequence

AAACAATGACAAAATGACCGACGCGCAATTTAACGGCAAGAAGACGACCGACGGAAATTAAAGCGTTAAAGAAGATGACTGGCGCGCAATTAAACGGTAAGAAGATGACGGCGAGAAAGTCAAAAGTAAGAAGATAAGTGGCGGGAAATTAAACGGTAACAAGGTGACCGGCGCATAACTTAAACGGTAAGAAGATGACCGGCGCGCATTCGGACAGTAACAAAAAGGGGGGAGCGCAATGAAACGGTAAAATCGCAGACCCATTTGGTTGAATTCTGTGTGACTCCCGCCGACGACTCTCTCTCTCTGTTTCTCTGTGAATTTACAAACCCATTTGGTCGAGTCGTCTGAGACTTCCGTCGACGGCAATCTCTCTCTCTCTGTTTCTCGGTGAATTCCCAAACCCATTTGGTTGAATCGTCTGAGACTTCCGTCGACGGCAATCTCTCTCTCTGTTTCTCTCTGTTTCTCTGCGTTCTTGGTTTTCTGAGATTGAAGAACAATGGGCAGAGGAATATTGAGCCTTAAACTCATTCCTAATCTCAAATCTCGCAGAACAACCTTTTTGAAGAGGAAGAAAAGCCTGATGAAGAAGGCATACGAGCTCTCCACCCTTTGCGATGCTCAAACCTGTGTTTTCATTGCTTCTGATTGTGACCCAGCCGCCCAGTTCGAAACTTGGCCTCCCAATCGAGACCAAATACACACTATGATCCGTTCCTACAAATCCCACTCTTTCCTCAAACAATCCCGCAACTCCTCTTATGATCTCAACCGATTCTTGTCCGATCGCAAAAACAAAATCGTAACAGACACGGCAAAATTGCGCCACAATGTTGATAAATTCAAGGATCACAACCTTGATTCTCTATCAGAAGATCAACTGAAGGATTTTTTGGCCACTTTGGATTCCAAAATTGGAGTTGTAGACGACATGATTCAGTTCATGGAGGCCGATTATGATTACTTGATTGAGGAAGTTATTGGCACACCATCATTTTGTCCCTTCGAAACAGAGGAATCCTGTGAATACAATGTCGAGGATTTTCAATCTCTGTTGGAGGATGAGTTTCTCGGAGCCCTGGTTCAGAACCATCCCTTTAATTTTGATTCTGAACTCATTGCATAGTTTCTCCATGAGAGTTTTCTCGCTCTCTTATTCTCTGTAAATGTATTGATTTTAGCATAATAGAAA

Coding sequence (CDS)

ATGGGCAGAGGAATATTGAGCCTTAAACTCATTCCTAATCTCAAATCTCGCAGAACAACCTTTTTGAAGAGGAAGAAAAGCCTGATGAAGAAGGCATACGAGCTCTCCACCCTTTGCGATGCTCAAACCTGTGTTTTCATTGCTTCTGATTGTGACCCAGCCGCCCAGTTCGAAACTTGGCCTCCCAATCGAGACCAAATACACACTATGATCCGTTCCTACAAATCCCACTCTTTCCTCAAACAATCCCGCAACTCCTCTTATGATCTCAACCGATTCTTGTCCGATCGCAAAAACAAAATCGTAACAGACACGGCAAAATTGCGCCACAATGTTGATAAATTCAAGGATCACAACCTTGATTCTCTATCAGAAGATCAACTGAAGGATTTTTTGGCCACTTTGGATTCCAAAATTGGAGTTGTAGACGACATGATTCAGTTCATGGAGGCCGATTATGATTACTTGATTGAGGAAGTTATTGGCACACCATCATTTTGTCCCTTCGAAACAGAGGAATCCTGTGAATACAATGTCGAGGATTTTCAATCTCTGTTGGAGGATGAGTTTCTCGGAGCCCTGGTTCAGAACCATCCCTTTAATTTTGATTCTGAACTCATTGCATAG

Protein sequence

MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETWPPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNLDSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYLIEEVIGTPSFCPFETEESCEYNVEDFQSLLEDEFLGALVQNHPFNFDSELIA

Homology

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BLAST of Cla97C05G093995 vs. NCBI nr
Match: XP_038877825.1 (agamous-like MADS-box protein MADS1 [Benincasa hispida])

HSP 1 Score: 285.0 bits (728), Expect = 5.1e-73
Identity = 158/235 (67.23%), Postives = 173/235 (73.62%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG LSLKLIPNLKSRRTTF+KRKKSLMKKAYELSTLCD QTCVFIASDCDP+  FETW
Sbjct: 1   MGRGTLSLKLIPNLKSRRTTFVKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60

Query: 61  PPNRDQIHTMIRSYKSHSFLK-QSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHN 120
           PPN DQI+ MIRSYKS SF K  SRNSSY+L +F SDRKNKI+TDT+KLRHNV+   DH+
Sbjct: 61  PPNHDQINAMIRSYKSRSFPKHSSRNSSYNLKQFFSDRKNKILTDTSKLRHNVE---DHH 120

Query: 121 LDSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYLIEEVIGTPSFCPFETEE------ 180
           LDSLSE QLK+ LATLDSKIGV D MIQFM+ADYD+LIE+  G  +  P ETEE      
Sbjct: 121 LDSLSEHQLKELLATLDSKIGVADGMIQFMDADYDHLIEQAFGMDTL-PSETEEPTTECD 180

Query: 181 ------------------------SCEYNVEDFQSLLEDEFLGALVQNHPFNFDS 205
                                     EYNVE FQSLLEDEFLG LV N+PF FDS
Sbjct: 181 ISEFLIEPDEFEYNVEGFQSPLEDEFEYNVEGFQSLLEDEFLGTLVLNNPFKFDS 231

[Close]

BLAST of Cla97C05G093995 vs. NCBI nr
Match: XP_038887166.1 (MADS-box protein SVP-like [Benincasa hispida])

HSP 1 Score: 270.8 bits (691), Expect = 9.9e-69
Identity = 145/201 (72.14%), Postives = 162/201 (80.60%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG L+LKLIPNLKSRRTTF+KRKKSLMKKAYELSTLCD QTCVFIASDCDP+  FETW
Sbjct: 1   MGRGTLNLKLIPNLKSRRTTFVKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
           PPN DQIH+MIRSYKSHSF K SRN SY+L++F S R NKI T+T+KLRHNVDKFKD +L
Sbjct: 61  PPNHDQIHSMIRSYKSHSFPKLSRN-SYNLHQFFSHRMNKIATETSKLRHNVDKFKDRHL 120

Query: 121 DSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYLIEEVIG-----TPSFCPFETEES- 180
           DSLSE QL++ LA+LDSKIGVVD MIQFMEADYD+LIEEV G     TPSF P ET+E+ 
Sbjct: 121 DSLSEHQLEELLASLDSKIGVVDGMIQFMEADYDHLIEEVSGFSSIDTPSFLPSETKETP 180

Query: 181 -------------CEYNVEDF 183
                         EYNVE+F
Sbjct: 181 ELDITEWLIGTNGLEYNVEEF 200

[Close]

BLAST of Cla97C05G093995 vs. NCBI nr
Match: XP_004145650.1 (agamous-like MADS-box protein AGL82 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 4.3e-64
Identity = 147/225 (65.33%), Postives = 164/225 (72.89%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRGILSLKLIPN KSRRTTFLKRKKSL+KKAYELSTLCD QTC+FIASDCDP+  FETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
           PPN  QIH MIRSYKSHSF K   NSSYDLNRF SDRKNKI+T+T+KL HNV       +
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKP--NSSYDLNRFFSDRKNKILTNTSKLLHNV-------V 120

Query: 121 DSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYLIEEVIG--TPSFCPFETE------ 180
           D  SE QL + L  LDSKI V +DMI+FMEADYD+LI++ IG  TP   P +TE      
Sbjct: 121 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP---PSQTEDEETTQ 180

Query: 181 -----------ESCEYNVEDFQSLLEDEFLGALVQNHP---FNFD 204
                      E  EYNVE FQSLLED+FL  LVQN+P   F+FD
Sbjct: 181 FNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFD 213

[Close]

BLAST of Cla97C05G093995 vs. NCBI nr
Match: KAE8650565.1 (hypothetical protein Csa_011366 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 4.3e-64
Identity = 147/225 (65.33%), Postives = 164/225 (72.89%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRGILSLKLIPN KSRRTTFLKRKKSL+KKAYELSTLCD QTC+FIASDCDP+  FETW
Sbjct: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
           PPN  QIH MIRSYKSHSF K   NSSYDLNRF SDRKNKI+T+T+KL HNV       +
Sbjct: 95  PPNHHQIHQMIRSYKSHSFTKP--NSSYDLNRFFSDRKNKILTNTSKLLHNV-------V 154

Query: 121 DSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYLIEEVIG--TPSFCPFETE------ 180
           D  SE QL + L  LDSKI V +DMI+FMEADYD+LI++ IG  TP   P +TE      
Sbjct: 155 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP---PSQTEDEETTQ 214

Query: 181 -----------ESCEYNVEDFQSLLEDEFLGALVQNHP---FNFD 204
                      E  EYNVE FQSLLED+FL  LVQN+P   F+FD
Sbjct: 215 FNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFD 247

[Close]

BLAST of Cla97C05G093995 vs. NCBI nr
Match: XP_022934582.1 (agamous-like MADS-box protein AGL6 [Cucurbita moschata])

HSP 1 Score: 226.1 bits (575), Expect = 2.8e-55
Identity = 128/190 (67.37%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG LSLKLI N KSRRTTF KRKKSLMKKAYELSTLCD QTCV IAS+     +FETW
Sbjct: 1   MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASE-----EFETW 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFK---- 120
           P +R Q+  MIRSYKS SF KQS  SSYDLN+F SDRKNKIVT+T+KLR  V K K    
Sbjct: 61  PSDRTQVEAMIRSYKSQSFCKQSAKSSYDLNQFFSDRKNKIVTETSKLREKVQKSKDTNS 120

Query: 121 DHNLDSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYLIEEVIGTPS-----FCPFET 180
           DH LDSLSE QLK  +ATLDSKIGV D MI+FMEADYDYLIE  +   S     F P ET
Sbjct: 121 DHCLDSLSEHQLKALMATLDSKIGVADSMIEFMEADYDYLIEGAVEISSIDKQIFSPLET 180

Query: 181 EESCEYNVED 182
           E S E N+ +
Sbjct: 181 EASPELNISE 185

[Close]

BLAST of Cla97C05G093995 vs. ExPASy Swiss-Prot
Match: Q9FIM0 (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-10
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 5   ILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFI-----ASDCDPAAQFET 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC  +TC+ +     A+D    ++ E 
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDV-VISEPEI 64

Query: 65  WPPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSD--RKNKIVTDTAKLRHNVDKFKD 124
           WP +  ++  +IR YK    +  S     ++  F++D  + N++VT     R N     +
Sbjct: 65  WPKDETKVRAIIRKYK--DTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWE 124

Query: 125 HNLDSLSEDQLKDFLATLDSKI 140
             LD  S +QL      +DSK+
Sbjct: 125 EKLDKCSREQLHGIFCAVDSKL 143

[Close]

BLAST of Cla97C05G093995 vs. ExPASy Swiss-Prot
Match: Q8RVL4 (MADS-box protein defh21 OS=Antirrhinum majus OX=4151 GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.8e-08
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG + +K I N  SR+ TF KR+  LMKK +ELS LCDAQ  + + S      ++ T 
Sbjct: 1   MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTP 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSS--YDLNRFLSDRKNKIVTDTAKLRHNVDKFKDH 120
           P +  QI  + R  K+   L +  N +  +  N  +     ++  +T  L+ N+ ++K  
Sbjct: 61  PFSMKQI--IDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGD 120

Query: 121 NLDSLSEDQLKDFLATLDSKIGVV 143
           +L ++  ++L +    LD  +  V
Sbjct: 121 DLSTVRFEELTELEKLLDQSLNKV 142

[Close]

BLAST of Cla97C05G093995 vs. ExPASy Swiss-Prot
Match: Q2QW53 (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS13 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 7.8e-08
Identity = 46/143 (32.17%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG + +K I N  SR+ TF KR+  L+KKAYELS LCDA+  + + S      +   +
Sbjct: 1   MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSS---RGRLYEY 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
             N +   T+ R  K+H+    S     ++N      +     ++AKLRH +   ++ N 
Sbjct: 61  SNNNNVKATIDRYKKAHACGSTSGAPLIEVN-----AQQYYQQESAKLRHQIQMLQNTNK 120

Query: 121 ----DSLSEDQLKDFLATLDSKI 140
               D++S   LK+ L  L+S++
Sbjct: 121 HLVGDNVSNLSLKE-LKQLESRL 134

[Close]

BLAST of Cla97C05G093995 vs. ExPASy Swiss-Prot
Match: P29383 (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-07
Identity = 54/196 (27.55%), Postives = 90/196 (45.92%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCDA+  + I S+     +F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
           P     +   +  Y+ HS+      ++ D N+   D ++K   D  KL+  V+  +    
Sbjct: 61  PSG---MARTVDKYRKHSY------ATMDPNQSAKDLQDK-YQDYLKLKSRVEILQHSQR 120

Query: 121 DSLSEDQLKDFLATLDSKIGVVD-DMIQFMEADYDYLIEEV--IGTPSFCPFETEESCEY 180
             L E+  +  +  L+     VD  + Q        +++++  + T      ET      
Sbjct: 121 HLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRR 180

Query: 181 NVEDFQSLLEDEFLGA 194
            +ED  + L   F G+
Sbjct: 181 KLEDSDAALTQSFWGS 186

[Close]

BLAST of Cla97C05G093995 vs. ExPASy Swiss-Prot
Match: F6I457 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.0e-07
Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG + +K I N  +R+ TF KR+  L+KKAYELS LCDA+  + + S     ++   +
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS-----SRGRVY 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
             + + I + I  YK  S    +  S+ ++N     +      ++AKLR  +   ++ N 
Sbjct: 61  EYSNNNIKSTIDRYKKASSDSTNGGSTMEINAQYYQQ------ESAKLRQQIQMLQNSNR 120

Query: 121 ----DSLSEDQLKDFLATLDSKI 140
               DSL+   +K+ L  L++++
Sbjct: 121 HLMGDSLASLTVKE-LKQLENRL 131

[Close]

BLAST of Cla97C05G093995 vs. ExPASy TrEMBL
Match: A0A0A0LAL9 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.1e-64
Identity = 147/225 (65.33%), Postives = 164/225 (72.89%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRGILSLKLIPN KSRRTTFLKRKKSL+KKAYELSTLCD QTC+FIASDCDP+  FETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
           PPN  QIH MIRSYKSHSF K   NSSYDLNRF SDRKNKI+T+T+KL HNV       +
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKP--NSSYDLNRFFSDRKNKILTNTSKLLHNV-------V 120

Query: 121 DSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYLIEEVIG--TPSFCPFETE------ 180
           D  SE QL + L  LDSKI V +DMI+FMEADYD+LI++ IG  TP   P +TE      
Sbjct: 121 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP---PSQTEDEETTQ 180

Query: 181 -----------ESCEYNVEDFQSLLEDEFLGALVQNHP---FNFD 204
                      E  EYNVE FQSLLED+FL  LVQN+P   F+FD
Sbjct: 181 FNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFD 213

[Close]

BLAST of Cla97C05G093995 vs. ExPASy TrEMBL
Match: A0A6J1F370 (agamous-like MADS-box protein AGL6 OS=Cucurbita moschata OX=3662 GN=LOC111441717 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.4e-55
Identity = 128/190 (67.37%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG LSLKLI N KSRRTTF KRKKSLMKKAYELSTLCD QTCV IAS+     +FETW
Sbjct: 1   MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASE-----EFETW 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFK---- 120
           P +R Q+  MIRSYKS SF KQS  SSYDLN+F SDRKNKIVT+T+KLR  V K K    
Sbjct: 61  PSDRTQVEAMIRSYKSQSFCKQSAKSSYDLNQFFSDRKNKIVTETSKLREKVQKSKDTNS 120

Query: 121 DHNLDSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYLIEEVIGTPS-----FCPFET 180
           DH LDSLSE QLK  +ATLDSKIGV D MI+FMEADYDYLIE  +   S     F P ET
Sbjct: 121 DHCLDSLSEHQLKALMATLDSKIGVADSMIEFMEADYDYLIEGAVEISSIDKQIFSPLET 180

Query: 181 EESCEYNVED 182
           E S E N+ +
Sbjct: 181 EASPELNISE 185

[Close]

BLAST of Cla97C05G093995 vs. ExPASy TrEMBL
Match: A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 94/231 (40.69%), Postives = 124/231 (53.68%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFI-----ASDCDP-- 60
           M RG LS  LI N KSR +TF +RK SLMKKAYELSTLCD +TCV I     A D DP  
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSL 60

Query: 61  -AAQFETWPPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNV 120
            + +F TWP NR ++  MI +YK+ +   Q R   +DL+ + SDRK K+VT+  K R  V
Sbjct: 61  SSVEFHTWPSNRSEVEHMIHAYKNGNCNLQKR-KCFDLSDYFSDRKRKLVTEMCKHREKV 120

Query: 121 DKFK----DHNLDSLSEDQLKDFLATLDSKIGVVDDMIQFMEAD------------YDYL 180
            K      D  LD LSE QL++F+  LDS+I     MI FM+AD            Y+ +
Sbjct: 121 GKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRMIDFMDADNENLFGMFSCEEYENV 180

Query: 181 IE------------------EVIGTPSFCPFETEESCEYNVEDFQSLLEDE 190
           ++                  + + +P+  P E E  C  N E+ + LLEDE
Sbjct: 181 VQMGGDSSTPVLSLVELESTDSLNSPNPNPDEDEIGC--NFENLEYLLEDE 228

[Close]

BLAST of Cla97C05G093995 vs. ExPASy TrEMBL
Match: A0A6J1F4C8 (agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC111442271 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 81/168 (48.21%), Postives = 103/168 (61.31%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFI-----ASDCDP-- 60
           M RG LS  LI N KSR +TF +RK SLMKKAYELSTLCD +TCV I     A D DP  
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSL 60

Query: 61  -AAQFETWPPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNV 120
            + +F TWP NR ++  MI +YK+ +   Q R   +DL+ + SDRK K+VT+  K R  V
Sbjct: 61  SSVEFHTWPSNRSEVEHMIHAYKNGNCNFQKR-KCFDLSDYFSDRKRKLVTEMCKHREKV 120

Query: 121 DKFK----DHNLDSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYDYL 157
            K      D  LD LSE QL++F+  LDS+I     M+ FM+AD + L
Sbjct: 121 GKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRMVDFMDADNENL 167

[Close]

BLAST of Cla97C05G093995 vs. ExPASy TrEMBL
Match: A0A6J1EVI5 (agamous-like MADS-box protein AGL103 OS=Cucurbita moschata OX=3662 GN=LOC111438359 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.8e-26
Identity = 74/162 (45.68%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFI----ASDCDPAAQ 60
           MGRG LS++LI N KSR+TTFLKRKKSL++KAYELSTLCD + CVF+     +D  P  +
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRACVFVYGPNHNDQSP-VE 60

Query: 61  FETWPPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFK 120
             TWPP R++++ MI SYK++   K++R  ++DL  F S+RK K+  D +KLR +V + +
Sbjct: 61  LNTWPPCREEVNNMIASYKANCLHKRAR-KAFDLLDFFSERKKKLENDMSKLRKDVLEAR 120

Query: 121 ----DHNLDSLSEDQLKDFLATLDSKIGVVDDMIQFMEADYD 155
               D  LD L+EDQL+  +  LDSK+  +   I+ +  +++
Sbjct: 121 FPKWDERLDHLTEDQLRILMVKLDSKLDTMKRRIEIVTENHE 160

[Close]

BLAST of Cla97C05G093995 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-11
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 5   ILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFI-----ASDCDPAAQFET 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC  +TC+ +     A+D    ++ E 
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDV-VISEPEI 64

Query: 65  WPPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSD--RKNKIVTDTAKLRHNVDKFKD 124
           WP +  ++  +IR YK    +  S     ++  F++D  + N++VT     R N     +
Sbjct: 65  WPKDETKVRAIIRKYK--DTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWE 124

Query: 125 HNLDSLSEDQLKDFLATLDSKI 140
             LD  S +QL      +DSK+
Sbjct: 125 EKLDKCSREQLHGIFCAVDSKL 143

[Close]

BLAST of Cla97C05G093995 vs. TAIR 10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 54/196 (27.55%), Postives = 90/196 (45.92%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCDA+  + I S+     +F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
           P     +   +  Y+ HS+      ++ D N+   D ++K   D  KL+  V+  +    
Sbjct: 61  PSG---MARTVDKYRKHSY------ATMDPNQSAKDLQDK-YQDYLKLKSRVEILQHSQR 120

Query: 121 DSLSEDQLKDFLATLDSKIGVVD-DMIQFMEADYDYLIEEV--IGTPSFCPFETEESCEY 180
             L E+  +  +  L+     VD  + Q        +++++  + T      ET      
Sbjct: 121 HLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRR 180

Query: 181 NVEDFQSLLEDEFLGA 194
            +ED  + L   F G+
Sbjct: 181 KLEDSDAALTQSFWGS 186

[Close]

BLAST of Cla97C05G093995 vs. TAIR 10
Match: AT2G03710.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 54/196 (27.55%), Postives = 90/196 (45.92%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCDA+  + I S+     +F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
           P     +   +  Y+ HS+      ++ D N+   D ++K   D  KL+  V+  +    
Sbjct: 61  PSG---MARTVDKYRKHSY------ATMDPNQSAKDLQDK-YQDYLKLKSRVEILQHSQR 120

Query: 121 DSLSEDQLKDFLATLDSKIGVVD-DMIQFMEADYDYLIEEV--IGTPSFCPFETEESCEY 180
             L E+  +  +  L+     VD  + Q        +++++  + T      ET      
Sbjct: 121 HLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRR 180

Query: 181 NVEDFQSLLEDEFLGA 194
            +ED  + L   F G+
Sbjct: 181 KLEDSDAALTQSFWGS 186

[Close]

BLAST of Cla97C05G093995 vs. TAIR 10
Match: AT2G03710.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-08
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCDA+  + I S+     +F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHNL 120
           P     +   +  Y+ HS+      ++ D N+   D ++K   D  KL+  V+  +    
Sbjct: 61  PSG---MARTVDKYRKHSY------ATMDPNQSAKDLQDK-YQDYLKLKSRVEILQHSQR 116

Query: 121 DSLSED 127
             L E+
Sbjct: 121 HLLGEE 116

[Close]

BLAST of Cla97C05G093995 vs. TAIR 10
Match: AT4G09960.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 0


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASDCDPAAQFETW 60
           MGRG + +K I N  +R+ TF KR+  L+KKAYELS LCDA+  + + S      ++   
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA-- 60

Query: 61  PPNRDQIHTMIRSYKSHSFLKQSRNSSYDLNRFLSDRKNKIVTDTAKLRHNVDKFKDHN- 120
               + I + I  YK       + ++  ++N     +      ++AKLR  +   ++ N 
Sbjct: 61  ---NNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQ------ESAKLRQQIQTIQNSNR 120

Query: 121 ------LDSLSEDQLKDFLATLDSKI 140
                 L SLS  +LK     L+  I
Sbjct: 121 NLMGDSLSSLSVKELKQVENRLEKAI 135

The following BLAST results are available for this feature:

BLAST of Cla97C05G093995 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877825.1	5.1e-73	67.23	agamous-like MADS-box protein MADS1 [Benincasa hispida]	[more]
XP_038887166.1	9.9e-69	72.14	MADS-box protein SVP-like [Benincasa hispida]	[more]
XP_004145650.1	4.3e-64	65.33	agamous-like MADS-box protein AGL82 [Cucumis sativus]	[more]
KAE8650565.1	4.3e-64	65.33	hypothetical protein Csa_011366 [Cucumis sativus]	[more]
XP_022934582.1	2.8e-55	67.37	agamous-like MADS-box protein AGL6 [Cucurbita moschata]	[more]

BLAST of Cla97C05G093995 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIM0	3.7e-10	33.10	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=...	[more]
Q8RVL4	7.8e-08	30.56	MADS-box protein defh21 OS=Antirrhinum majus OX=4151 GN=DEFH21 PE=2 SV=1	[more]
Q2QW53	7.8e-08	32.17	MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
P29383	3.0e-07	27.55	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
F6I457	5.0e-07	30.07	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=...	[more]

BLAST of Cla97C05G093995 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL9	2.1e-64	65.33	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G258140 PE...	[more]
A0A6J1F370	1.4e-55	67.37	agamous-like MADS-box protein AGL6 OS=Cucurbita moschata OX=3662 GN=LOC111441717...	[more]
A0A6J1J5U6	3.5e-27	40.69	agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ...	[more]
A0A6J1F4C8	1.3e-26	48.21	agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC11144227...	[more]
A0A6J1EVI5	3.8e-26	45.68	agamous-like MADS-box protein AGL103 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]

BLAST of Cla97C05G093995 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58890.1	2.6e-11	33.10	AGAMOUS-like 82	[more]
AT2G03710.1	2.1e-08	27.55	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.2	2.1e-08	27.55	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.3	3.6e-08	33.33	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.2	1.4e-07	29.45	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 40.64 coord: 38..59 score: 27.18 coord: 23..38 score: 65.84
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..62 e-value: 3.4E-17 score: 73.1
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..50 e-value: 2.2E-15 score: 55.9
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 18.600286
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 14..99 e-value: 2.6E-17 score: 64.7
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..83
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..178
None	No IPR available	PANTHER	PTHR11945:SF176	AGAMOUS-LIKE MADS-BOX PROTEIN AGL82	coord: 3..178
IPR033897	MADS SRF-like	CDD	cd00266	MADS_SRF_like	coord: 2..87 e-value: 3.55388E-20 score: 78.8411

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G093995.1	Cla97C05G093995.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0000987	cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding