Cla97C04G078180 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G078180
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	single-stranded DNA-binding protein, mitochondrial
Location	Cla97Chr04: 25737395 .. 25739404 (+)
RNA-Seq Expression	Cla97C04G078180
Synteny	Cla97C04G078180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCGATCCGAAACTCAACTTTCATTACTATCCAAAATCGGAATCGGGGCGGTTCTACTTTCTGAAGGGTTCTACCTTTCTAGGGTTTAAGCCATTCGCTGAATTTCTGAATTTCTCCGTAGATTGTCAATTACGAAGACGATGACCTCCATGGCTGCACTGTCAAGAAGCCTCTGCCGTTCTCTCCTGACCAATTCCAAAGTTTCTCATCCCCACCACATCCTCCCCGTAGCCTATTGCACCAATAACCTTTCCTTCCGTTCGGTATCAGACATCACTGAATCCGGTATTGAATCGGACTTGGACTTGGACTCGGACTCACATTCAGTAACTAATCGACCTTCTCCCTCACCGTCCTTGTCCCAATCGTCAACCCAGACGAGAACGGTCTATAATCGACCTCTAGAAAATGGCCTTGATGCTGGCGTTTATAAGGTACGTTGGATGTATGAGTGCTTTGGGACTTTCGATTCTCGATGTTTGGTTGCTTACACTCATCTAATTGACATTTCATGTTTGCGTGAAGGCTATATTGGTGGGTCAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGGAGAACAGTGACGCTGTTATCAATTGGGACGGGCGGTATTCATAATAATCGGCGACCCTTGGCTAACGAGGAACCCAAAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCGATGTGGTCATGAAGCATGTTGTGCCAGGGTAAGCATTTCGGTCTTGATCATTTACCTGAGGTACACGGAGATAATACCATAGGAATTTGTTTGAATTCTGCCATCAATTGCTGTGAGCTTCTTAATAGCGAGCTTATGTTACAGTAGTAAAGTGGTGCGAAGCTCCACTTAATCAATTCCAATTCCAAACTGTGCCCGTTATTAACTTTGTAGTTATCTTGTTTTCTGGTTCATGTTACCCTGTTGCTCACAAAAGATTTTTTAGTAGTCTTAGTTTCCTCATTTTTTGTTGCATCTTCATATTTACAGTGTAAATTGGTCTTTTTCAGTTCAATTTTGTATTTGGAGGGGAATTTGGAGACCAAAATCTTCACTGATCCAGCCACTGGTCTTGTTCGACGAATTAGAGAAGTTGCCATTCGACGCAATGGTATTCTTTCATTCTTTAAAGGGGTTTTTTGTGGGCTTGTTTTTTGTATTCCCTTGTTTTCATTACAAAAGCAGTTTGTTTCTGTAAAAAAAATTGGTACAGTATTTATTATTTCTTACCACCCTGTTTATATGAATATAGAGCTCCTCATGCATTCGGGCTACTTACTTAAACTACTTACCATCGGTGTCATGTTTAACAAAAAAAAAAATCCGGTGAATTTTGTTCTGAACTGTGATGAAGGTACAGCCTTTTTACGATGCAAATCCCCTATCTTGGACGTGATGCTTTATTTTGACTGAAAAAAGCAAAATTATTTTTCTTGTGTGGGCTGAAAAACCTATATGGGTTCTGACTCGTTTTGAATTCTGATATTGGGTCCCTGATTTTTCCTCTCTTTTCTTGTTTCGTGTTTTTTCATGGCCTGATCCTCTGCGAACTGGAGGGATTATAAAGACTTTGCTTTCTTTTGTGGGAGTTGATATTCATGCATATTGAAATTAATGGCCCTAGGATCACATATGATCTCCGTTGATAAAGTTTGGTTGTCATGTAGGCCGCCTTGTATTTTTGGGCAAGGGAGAAGGTAATGCTCAGCAGTCCTCTCCATCAGAATTCAAAGGTGTTGGCTATTACTAAGAGATGTTGTTTGCAGTTTTATCATCTGAAGGTTCGAATCACCCACTTTTCTCCGTAAATGCTGTGATTTCACCTCAAATTAGTTGCAACAAGGCATTTTGAAAAGGATCTATTACATTGCGTTGGGATGATTCCCTTTCCCCACACCCTTTGTTAAGTGACCAATGCCTTCGATATTTATATGATTTAAATGGAATTTGAATCCGCTTTCTC

mRNA sequence

ATGGTCCGATCCGAAACTCAACTTTCATTACTATCCAAAATCGGAATCGGGGCGGTTCTACTTTCTGAAGGGTTCTACCTTTCTAGGATTGTCAATTACGAAGACGATGACCTCCATGGCTGCACTGTCAAGAAGCCTCTGCCGTTCTCTCCTGACCAATTCCAAAGTTTCTCATCCCCACCACATCCTCCCCACATCACTGAATCCGGTATTGAATCGGACTTGGACTTGGACTCGGACTCACATTCAGTAACTAATCGACCTTCTCCCTCACCGTCCTTGTCCCAATCGTCAACCCAGACGAGAACGGTCTATAATCGACCTCTAGAAAATGGCCTTGATGCTGGCGTTTATAAGGCTATATTGGTGGGTCAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGGAGAACAGTGACGCTGTTATCAATTGGGACGGGCGGTATTCATAATAATCGGCGACCCTTGGCTAACGAGGAACCCAAAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCGATGTGGTCATGAAGCATGTTGTGCCAGGGGGAATTTGGAGACCAAAATCTTCACTGATCCAGCCACTGGTCTTGTTCGACGAATTAGAGAAGTTGCCATTCGACGCAATGGCCGCCTTGTATTTTTGGGCAAGGGAGAAGGTAATGCTCAGCAGTCCTCTCCATCAGAATTCAAAGGTGTTGGCTATTACTAAGAGATGTTGTTTGCAGTTTTATCATCTGAAGGTTCGAATCACCCACTTTTCTCCGTAAATGCTGTGATTTCACCTCAAATTAGTTGCAACAAGGCATTTTGAAAAGGATCTATTACATTGCGTTGGGATGATTCCCTTTCCCCACACCCTTTGTTAAGTGACCAATGCCTTCGATATTTATATGATTTAAATGGAATTTGAATCCGCTTTCTC

Coding sequence (CDS)

ATGGTCCGATCCGAAACTCAACTTTCATTACTATCCAAAATCGGAATCGGGGCGGTTCTACTTTCTGAAGGGTTCTACCTTTCTAGGATTGTCAATTACGAAGACGATGACCTCCATGGCTGCACTGTCAAGAAGCCTCTGCCGTTCTCTCCTGACCAATTCCAAAGTTTCTCATCCCCACCACATCCTCCCCACATCACTGAATCCGGTATTGAATCGGACTTGGACTTGGACTCGGACTCACATTCAGTAACTAATCGACCTTCTCCCTCACCGTCCTTGTCCCAATCGTCAACCCAGACGAGAACGGTCTATAATCGACCTCTAGAAAATGGCCTTGATGCTGGCGTTTATAAGGCTATATTGGTGGGTCAGGTGGGGCAAAGTCCATTGCAGAAGCAGCTGAAGAGTGGGAGAACAGTGACGCTGTTATCAATTGGGACGGGCGGTATTCATAATAATCGGCGACCCTTGGCTAACGAGGAACCCAAAGAGTATGCAAATCGGTGCGCAGTTCAATGGCATCGGGTTTCGATTTATCCTCAGAGACTGGGCGATGTGGTCATGAAGCATGTTGTGCCAGGGGGAATTTGGAGACCAAAATCTTCACTGATCCAGCCACTGGTCTTGTTCGACGAATTAGAGAAGTTGCCATTCGACGCAATGGCCGCCTTGTATTTTTGGGCAAGGGAGAAGGTAATGCTCAGCAGTCCTCTCCATCAGAATTCAAAGGTGTTGGCTATTACTAAGAGATGTTGTTTGCAGTTTTATCATCTGAAGGTTCGAATCACCCACTTTTCTCCGTAA

Protein sequence

MVRSETQLSLLSKIGIGAVLLSEGFYLSRIVNYEDDDLHGCTVKKPLPFSPDQFQSFSSPPHPPHITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDVVMKHVVPGGIWRPKSSLIQPLVLFDELEKLPFDAMAALYFWAREKVMLSSPLHQNSKVLAITKRCCLQFYHLKVRITHFSP

Homology

[Close]

BLAST of Cla97C04G078180 vs. NCBI nr
Match: XP_023519718.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519719.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519720.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-56
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           I ES I+SD+DL   SHSV+NRPS SPS SQSS+QTRT+YNRPLENGLDAG+YKAILVGQ
Sbjct: 45  IGESSIDSDMDL--GSHSVSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQ 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
           VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVSIYPQRLG
Sbjct: 105 VGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           DVVMKHVVPG I
Sbjct: 165 DVVMKHVVPGSI 174

[Close]

BLAST of Cla97C04G078180 vs. NCBI nr
Match: XP_023000724.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000725.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000726.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-56
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           I ES I+SD+DL   SHSV+NRPS SPS SQSS+QTRT+YNRPLENGLDAG+YKAILVGQ
Sbjct: 45  IGESSIDSDMDL--GSHSVSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQ 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
           VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVSIYPQRLG
Sbjct: 105 VGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           DVVMKHVVPG I
Sbjct: 165 DVVMKHVVPGSI 174

[Close]

BLAST of Cla97C04G078180 vs. NCBI nr
Match: XP_038895598.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038895599.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 4.3e-56
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           ITES IES  DLDSDSHSVTN PS SPS SQSSTQ+RT+YNRPLENGLDAGVYKAILVGQ
Sbjct: 45  ITESSIES--DLDSDSHSVTNPPSLSPSSSQSSTQSRTIYNRPLENGLDAGVYKAILVGQ 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
           VGQSPLQK+LKSG TVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVS+YPQRLG
Sbjct: 105 VGQSPLQKRLKSGITVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           ++VMKHVVPG I
Sbjct: 165 NIVMKHVVPGSI 174

[Close]

BLAST of Cla97C04G078180 vs. NCBI nr
Match: XP_022137580.1 (single-stranded DNA-binding protein, mitochondrial [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 5.6e-56
Identity = 112/132 (84.85%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           I +S I+S  D+DSDSHSVTNRPS SPS SQSSTQTR +YNRPLENGLDAG+YKAILVGQ
Sbjct: 45  IGDSSIDS--DMDSDSHSVTNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYKAILVGQ 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
            GQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVS+YPQRLG
Sbjct: 105 AGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           ++VMKHVVPG I
Sbjct: 165 EIVMKHVVPGSI 174

[Close]

BLAST of Cla97C04G078180 vs. NCBI nr
Match: XP_038893715.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893716.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893717.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893718.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 2.8e-55
Identity = 114/132 (86.36%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           ITES IES  +LDSDSHSVTN PS SPS SQSST +RT+YNRPLENGLDAGVYKAILVGQ
Sbjct: 45  ITESSIES--NLDSDSHSVTNPPSLSPSSSQSSTLSRTIYNRPLENGLDAGVYKAILVGQ 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
           VGQSPLQK+LKSG TVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVS+YPQRLG
Sbjct: 105 VGQSPLQKRLKSGITVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           D+VMKHVVPG I
Sbjct: 165 DIVMKHVVPGSI 174

[Close]

BLAST of Cla97C04G078180 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 68  ESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVG 127
           + G+E D +      +VT RP   P               P +     GV++AI+ G+VG
Sbjct: 38  DEGVEEDFE-----ENVTERPELQPHGVD-----------PRKGWGFRGVHRAIICGKVG 97

Query: 128 QSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDV 187
           Q+PLQK L++GRTVT+ ++GTGG+ + R   A  +PK        QWHR++++ + LG  
Sbjct: 98  QAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNEVLGSY 138

Query: 188 VMK 191
            ++
Sbjct: 158 AVQ 138

[Close]

BLAST of Cla97C04G078180 vs. ExPASy Swiss-Prot
Match: P09381 (Single-stranded DNA-binding protein 1-B, mitochondrial OS=Xenopus laevis OX=8355 GN=ssbp1-b PE=1 SV=4)

HSP 1 Score: 46.6 bits (109), Expect = 5.1e-04
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 113 LDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANE--EPKEYANRC 172
           L+  + K  L+G+VGQ P+ +Q      VT+ S+ T  +    R   NE  +P    N+ 
Sbjct: 26  LERSMNKVQLLGRVGQDPVMRQADGKNPVTIFSLATNELW---RSGENEVFQPAGDVNQ- 85

Query: 173 AVQWHRVSIYPQRLGDVVMKHVVPG 196
              WHRVS++   L DV  +HV  G
Sbjct: 86  KTTWHRVSVFRPGLRDVAYQHVKKG 106

[Close]

BLAST of Cla97C04G078180 vs. ExPASy Swiss-Prot
Match: P09380 (Single-stranded DNA-binding protein 1-A, mitochondrial OS=Xenopus laevis OX=8355 GN=ssbp1-a PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 8.8e-04
Identity = 23/83 (27.71%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 113 LDAGVYKAILVGQVGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAV 172
           L+  + K  L+G+VGQ P+ +Q +    VT+ S+ T  +  +          +   +   
Sbjct: 24  LERSINKVQLLGRVGQDPVMRQAEGKNPVTIFSLATNELWRSGESETFHTAGDVNQK--T 83

Query: 173 QWHRVSIYPQRLGDVVMKHVVPG 196
            WHR+S++   L DV  +HV  G
Sbjct: 84  TWHRISVFRPGLRDVAYQHVKKG 104

[Close]

BLAST of Cla97C04G078180 vs. ExPASy TrEMBL
Match: A0A6J1KGM8 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495086 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 7.1e-57
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           I ES I+SD+DL   SHSV+NRPS SPS SQSS+QTRT+YNRPLENGLDAG+YKAILVGQ
Sbjct: 45  IGESSIDSDMDL--GSHSVSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQ 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
           VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVSIYPQRLG
Sbjct: 105 VGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           DVVMKHVVPG I
Sbjct: 165 DVVMKHVVPGSI 174

[Close]

BLAST of Cla97C04G078180 vs. ExPASy TrEMBL
Match: A0A6J1C717 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008995 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.7e-56
Identity = 112/132 (84.85%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           I +S I+S  D+DSDSHSVTNRPS SPS SQSSTQTR +YNRPLENGLDAG+YKAILVGQ
Sbjct: 45  IGDSSIDS--DMDSDSHSVTNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYKAILVGQ 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
            GQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVS+YPQRLG
Sbjct: 105 AGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           ++VMKHVVPG I
Sbjct: 165 EIVMKHVVPGSI 174

[Close]

BLAST of Cla97C04G078180 vs. ExPASy TrEMBL
Match: A0A0A0LTL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.3e-55
Identity = 112/132 (84.85%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           ITESGIESDL  + DS+SVTN+PS SPS SQS TQ R VYNRPLENGLDAG+YKAILVG+
Sbjct: 45  ITESGIESDLYTELDSNSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGK 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
           VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVSIYP RLG
Sbjct: 105 VGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLG 164

Query: 186 DVVMKHVVPGGI 198
           ++VMKHVVPG I
Sbjct: 165 NIVMKHVVPGSI 176

[Close]

BLAST of Cla97C04G078180 vs. ExPASy TrEMBL
Match: A0A5D3BKT6 (Single-stranded DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001780 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           ITESGIESDL  + DS+SVTN+PS SPS SQS TQ+R VY+RPLENGLDAG++KAILVG+
Sbjct: 45  ITESGIESDLYSELDSNSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGK 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
           VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVSIYPQRLG
Sbjct: 105 VGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           ++VMKH VPG I
Sbjct: 165 NIVMKHAVPGSI 176

[Close]

BLAST of Cla97C04G078180 vs. ExPASy TrEMBL
Match: A0A1S3C3D2 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495996 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 110/132 (83.33%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 66  ITESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQ 125
           ITESGIESDL  + DS+SVTN+PS SPS SQS TQ+R VY+RPLENGLDAG++KAILVG+
Sbjct: 45  ITESGIESDLYSELDSNSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGK 104

Query: 126 VGQSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLG 185
           VGQSPLQKQLKSGRTVTLLS+GTGGI NNRRPLANEEP+EYANRCAVQWHRVSIYPQRLG
Sbjct: 105 VGQSPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLG 164

Query: 186 DVVMKHVVPGGI 198
           ++VMKH VPG I
Sbjct: 165 NIVMKHAVPGSI 176

[Close]

BLAST of Cla97C04G078180 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-39
Identity = 79/129 (61.24%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 69  SGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVGQ 128
           + I S  D D D       P  S  +S+ S + R +  RPLENGLD+G++KAILVGQVGQ
Sbjct: 32  NNITSPEDSDFDELESPIEPKASDPVSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQ 91

Query: 129 SPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDVV 188
            PLQK+LKSGRTVTL S+GTGGI NNRRPL NE+P+EYA+R AVQWHRVS+YP+RL D+V
Sbjct: 92  LPLQKKLKSGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLV 151

Query: 189 MKHVVPGGI 198
           +K+V PG +
Sbjct: 152 LKNVEPGTV 160

[Close]

BLAST of Cla97C04G078180 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-12
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 68  ESGIESDLDLDSDSHSVTNRPSPSPSLSQSSTQTRTVYNRPLENGLDAGVYKAILVGQVG 127
           + G+E D +      +VT RP   P               P +     GV++AI+ G+VG
Sbjct: 38  DEGVEEDFE-----ENVTERPELQPHGVD-----------PRKGWGFRGVHRAIICGKVG 97

Query: 128 QSPLQKQLKSGRTVTLLSIGTGGIHNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDV 187
           Q+PLQK L++GRTVT+ ++GTGG+ + R   A  +PK        QWHR++++ + LG  
Sbjct: 98  QAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNEVLGSY 138

Query: 188 VMK 191
            ++
Sbjct: 158 AVQ 138

The following BLAST results are available for this feature:

BLAST of Cla97C04G078180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519718.1	1.5e-56	87.12	single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. p...	[more]
XP_023000724.1	1.5e-56	87.12	single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000...	[more]
XP_038895598.1	4.3e-56	87.12	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]
XP_022137580.1	5.6e-56	84.85	single-stranded DNA-binding protein, mitochondrial [Momordica charantia]	[more]
XP_038893715.1	2.8e-55	86.36	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]

BLAST of Cla97C04G078180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	5.7e-11	33.33	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P09381	5.1e-04	34.12	Single-stranded DNA-binding protein 1-B, mitochondrial OS=Xenopus laevis OX=8355...	[more]
P09380	8.8e-04	27.71	Single-stranded DNA-binding protein 1-A, mitochondrial OS=Xenopus laevis OX=8355...	[more]

BLAST of Cla97C04G078180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGM8	7.1e-57	87.12	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1C717	2.7e-56	84.85	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]
A0A0A0LTL6	2.3e-55	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1	[more]
A0A5D3BKT6	1.5e-54	83.33	Single-stranded DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C3D2	1.5e-54	83.33	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Cla97C04G078180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18580.1	1.7e-39	61.24	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G11060.1	4.0e-12	33.33	mitochondrially targeted single-stranded DNA binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 110..197 e-value: 1.6E-9 score: 39.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..102
None	No IPR available	PANTHER	PTHR10302:SF16	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 69..196
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 119..195 e-value: 9.2E-10 score: 38.5
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 69..196
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 116..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G078180.2	Cla97C04G078180.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003697	single-stranded DNA binding