Cla97C02G050635 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C02G050635
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	arabinogalactan peptide 13-like
Location	Cla97Chr02: 37735250 .. 37735429 (-)
RNA-Seq Expression	Cla97C02G050635
Synteny	Cla97C02G050635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAATCAAGTTGAAGCTCTTCCTGGTGCTGATGCTACTGGCCTTTGCTGCCACCATTGCCCAATCTGCTTCTCCTTCTGAGGCTCCTGCTCCTGCCCCTGCCTCTGATGCTTCTCTCTTTTACCCCACTTTCTTTGCTTCTCTTTCTGCTCTTCTTTTTGCCTTCTGCCTTTAA

mRNA sequence

ATGGAGGCAATCAAGTTGAAGCTCTTCCTGGTGCTGATGCTACTGGCCTTTGCTGCCACCATTGCCCAATCTGCTTCTCCTTCTGAGGCTCCTGCTCCTGCCCCTGCCTCTGATGCTTCTCTCTTTTACCCCACTTTCTTTGCTTCTCTTTCTGCTCTTCTTTTTGCCTTCTGCCTTTAA

Coding sequence (CDS)

ATGGAGGCAATCAAGTTGAAGCTCTTCCTGGTGCTGATGCTACTGGCCTTTGCTGCCACCATTGCCCAATCTGCTTCTCCTTCTGAGGCTCCTGCTCCTGCCCCTGCCTCTGATGCTTCTCTCTTTTACCCCACTTTCTTTGCTTCTCTTTCTGCTCTTCTTTTTGCCTTCTGCCTTTAA

Protein sequence

MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL

Homology

[Close]

BLAST of Cla97C02G050635 vs. NCBI nr
Match: XP_038902540.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 6.2e-16
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
          MEAIKLKLFLVL+L+AFA TIAQSA+PSEAPAPAPASDASLFYPTFFASLSALLFAF L
Sbjct: 1  MEAIKLKLFLVLLLMAFAGTIAQSATPSEAPAPAPASDASLFYPTFFASLSALLFAFFL 59

[Close]

BLAST of Cla97C02G050635 vs. NCBI nr
Match: XP_022944304.1 (arabinogalactan peptide 13-like [Cucurbita moschata] >XP_022985687.1 arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 5.8e-14
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
          MEAIKLKLFLV++L+AFAAT AQ A+PSEAPAPAPASDA LFYPTFFASLSAL+FAF L
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

[Close]

BLAST of Cla97C02G050635 vs. NCBI nr
Match: KAG6570311.1 (hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 6.4e-13
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
           MEAIKLKLFLV++L+AFAAT AQ A+PSEAPAPAPASDA LF PTFFASLSAL+FAF L
Sbjct: 83  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFNPTFFASLSALVFAFFL 141

[Close]

BLAST of Cla97C02G050635 vs. NCBI nr
Match: XP_023513159.1 (arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
          MEAIKLKL LV++L+AFAAT AQ A+PSE  APAPASDA LFYPTFFASLSAL+FAF L
Sbjct: 1  MEAIKLKLLLVMLLVAFAATTAQPAAPSE--APAPASDAPLFYPTFFASLSALVFAFFL 57

[Close]

BLAST of Cla97C02G050635 vs. NCBI nr
Match: KAG6605834.1 (Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MEAIKLKLFLVLM-LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
           MEA+KLKLFLVL+ L+AFA T+AQ+A+PSEAPAPAPASDA L Y +FFASLS L+FA+ L
Sbjct: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107

[Close]

BLAST of Cla97C02G050635 vs. ExPASy Swiss-Prot
Match: Q9STQ3 (Arabinogalactan protein 13 OS=Arabidopsis thaliana OX=3702 GN=AGP13 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.6e-06
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF 58
          MEA+K++LF+ +++ A A +  Q A+  EAPAP+P SDASL  P FFAS++ L F F
Sbjct: 1  MEAMKMRLFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGF 57

[Close]

BLAST of Cla97C02G050635 vs. ExPASy Swiss-Prot
Match: Q9LVC0 (Arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=AGP14 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFA-ATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF 58
          MEA+K+KL++V+++   A +T+ Q+ +  +APAP+P SDAS F PTFFAS++ + F F
Sbjct: 1  MEAMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGF 58

[Close]

BLAST of Cla97C02G050635 vs. ExPASy Swiss-Prot
Match: Q9LJD9 (Arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=AGP12 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.3e-04
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MEAIKLKLFLVLM--LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF 58
          ME++K+KL +VLM  ++AF+A +   A+ +EAPAP+P SDA++F P  FAS++AL   F
Sbjct: 1  MESMKMKLIVVLMVAIVAFSA-VGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGF 58

[Close]

BLAST of Cla97C02G050635 vs. ExPASy TrEMBL
Match: A0A6J1J5K6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111483668 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-14
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
          MEAIKLKLFLV++L+AFAAT AQ A+PSEAPAPAPASDA LFYPTFFASLSAL+FAF L
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

[Close]

BLAST of Cla97C02G050635 vs. ExPASy TrEMBL
Match: A0A6J1FWG8 (arabinogalactan peptide 13-like OS=Cucurbita moschata OX=3662 GN=LOC111448787 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-14
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
          MEAIKLKLFLV++L+AFAAT AQ A+PSEAPAPAPASDA LFYPTFFASLSAL+FAF L
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

[Close]

BLAST of Cla97C02G050635 vs. ExPASy TrEMBL
Match: A0A438JV44 (Arabinogalactan peptide 14 OS=Vitis vinifera OX=29760 GN=AGP14_0 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
          MEA+K+KLFL ++++  A +  Q A+ + APAPAPASDA++F PTFFASL+AL F F L
Sbjct: 1  MEAMKMKLFLAVVMMILAVSAVQPAAAATAPAPAPASDAAIFVPTFFASLTALAFGFLL 59

[Close]

BLAST of Cla97C02G050635 vs. ExPASy TrEMBL
Match: F6GUN4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00440 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAFCL 60
          MEA+K+KLFL ++++  A +  Q A+ + APAPAPASDA++F PTFFASL+AL F F L
Sbjct: 1  MEAMKMKLFLAVVMMILAVSAVQPAAAATAPAPAPASDAAIFVPTFFASLTALAFGFLL 59

[Close]

BLAST of Cla97C02G050635 vs. ExPASy TrEMBL
Match: A0A2I4G052 (arabinogalactan protein 13-like OS=Juglans regia OX=51240 GN=LOC109003553 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 30/55 (54.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLF 56
          MEA+KLKLF+ ++++  A +  Q+A+ +EAPAP+P S+A++F PTFFASL+AL F
Sbjct: 1  MEAMKLKLFVTMLMVLVAVSFVQNAAAAEAPAPSPTSEATIFIPTFFASLAALAF 55

[Close]

BLAST of Cla97C02G050635 vs. TAIR 10
Match: AT4G26320.1 (arabinogalactan protein 13 )

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-07
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF 58
          MEA+K++LF+ +++ A A +  Q A+  EAPAP+P SDASL  P FFAS++ L F F
Sbjct: 1  MEAMKMRLFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGF 57

[Close]

BLAST of Cla97C02G050635 vs. TAIR 10
Match: AT5G56540.1 (arabinogalactan protein 14 )

HSP 1 Score: 49.7 bits (117), Expect = 9.5e-07
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFA-ATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF 58
          MEA+K+KL++V+++   A +T+ Q+ +  +APAP+P SDAS F PTFFAS++ + F F
Sbjct: 1  MEAMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGF 58

[Close]

BLAST of Cla97C02G050635 vs. TAIR 10
Match: AT3G13520.1 (arabinogalactan protein 12 )

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-05
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MEAIKLKLFLVLM--LLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF 58
          ME++K+KL +VLM  ++AF+A +   A+ +EAPAP+P SDA++F P  FAS++AL   F
Sbjct: 1  MESMKMKLIVVLMVAIVAFSA-VGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGF 58

[Close]

BLAST of Cla97C02G050635 vs. TAIR 10
Match: AT1G55330.1 (arabinogalactan protein 21 )

HSP 1 Score: 42.4 bits (98), Expect = 1.5e-04
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1  MEAIKLKLFLVLMLLAFAATIAQSASPSEAPAPAPASDASLFYPTFFASLSALLFAF 58
          MEA+K+K+ + +M++A A + A +A+  EAPAP+P SDA++F P  FAS+ AL   F
Sbjct: 1  MEAMKMKMMVFIMVVAVAFS-AATAATVEAPAPSPTSDAAMFVPALFASVVALASGF 56

The following BLAST results are available for this feature:

BLAST of Cla97C02G050635 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902540.1	6.2e-16	91.53	arabinogalactan protein 13-like [Benincasa hispida]	[more]
XP_022944304.1	5.8e-14	84.75	arabinogalactan peptide 13-like [Cucurbita moschata] >XP_022985687.1 arabinogala...	[more]
KAG6570311.1	6.4e-13	83.05	hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023513159.1	1.0e-10	79.66	arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo]	[more]
KAG6605834.1	1.5e-09	73.33	Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cla97C02G050635 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STQ3	4.6e-06	50.88	Arabinogalactan protein 13 OS=Arabidopsis thaliana OX=3702 GN=AGP13 PE=1 SV=1	[more]
Q9LVC0	1.3e-05	48.28	Arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=AGP14 PE=1 SV=1	[more]
Q9LJD9	4.3e-04	49.15	Arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=AGP12 PE=1 SV=1	[more]

BLAST of Cla97C02G050635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J5K6	2.8e-14	84.75	arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111483668 PE=3...	[more]
A0A6J1FWG8	2.8e-14	84.75	arabinogalactan peptide 13-like OS=Cucurbita moschata OX=3662 GN=LOC111448787 PE...	[more]
A0A438JV44	2.1e-06	57.63	Arabinogalactan peptide 14 OS=Vitis vinifera OX=29760 GN=AGP14_0 PE=3 SV=1	[more]
F6GUN4	2.1e-06	57.63	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00440 PE=3 SV=...	[more]
A0A2I4G052	1.8e-05	54.55	arabinogalactan protein 13-like OS=Juglans regia OX=51240 GN=LOC109003553 PE=3 S...	[more]

BLAST of Cla97C02G050635 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26320.1	3.3e-07	50.88	arabinogalactan protein 13	[more]
AT5G56540.1	9.5e-07	48.28	arabinogalactan protein 14	[more]
AT3G13520.1	3.1e-05	49.15	arabinogalactan protein 12	[more]
AT1G55330.1	1.5e-04	47.37	arabinogalactan protein 21	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34114:SF4	ARABINOGALACTAN PROTEIN 21	coord: 1..58
IPR039281	Arabinogalactan protein 3/12/13/14/21	PANTHER	PTHR34114	ARABINOGALACTAN PEPTIDE 1	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G050635.1	Cla97C02G050635.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane