Cla97C02G046440 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C02G046440
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	RING-type E3 ubiquitin transferase
Location	Cla97Chr02: 34243344 .. 34243949 (+)
RNA-Seq Expression	Cla97C02G046440
Synteny	Cla97C02G046440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCGAGCCCGCCGCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCGTGGTCAATCTCGACCATCGCAATCGTATGCATCTTCTTCCTACTGTTGAGCAACTACAGGATATTGAAACGACTGTTCCGTGGAGTGATCTCCGGTCGACCTAGGGTCGAAAACCCTACTGATCCTTCCCCGCAAATCCATGGCCATGGATTGGAGGCCTCAAGGATTCATTTGCTACCTATATCACAGTTCAAAAAGAATGAAGAATTCGAATCAACGGCAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACAATTACCGAATTGCAATCATTCGTTTCATAGTTCTTGCATCGACGCCTGGTTCCGTGATCATTCGAGTTGTCCACTCTGCAGATTGCAAATCTCGAGTTTCTCTCTCGATTTCTCTACTCCTGATTCTTCTTTGGGAATGCTGGAGACGCTTGGAAGAGAAAACGTTCTACGAGAAAGAGTACCGCATTATCAAACACTTCGTGCTCAAAATCTGCAGCACTCGGAATTGAGAAGAGATGCATCGGTTCAAGGATCAGATCAATGA

mRNA sequence

ATGTCATCGAGCCCGCCGCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCGTGGTCAATCTCGACCATCGCAATCGTATGCATCTTCTTCCTACTGTTGAGCAACTACAGGATATTGAAACGACTGTTCCGTGGAGTGATCTCCGGTCGACCTAGGGTCGAAAACCCTACTGATCCTTCCCCGCAAATCCATGGCCATGGATTGGAGGCCTCAAGGATTCATTTGCTACCTATATCACAGTTCAAAAAGAATGAAGAATTCGAATCAACGGCAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACAATTACCGAATTGCAATCATTCGTTTCATAGTTCTTGCATCGACGCCTGGTTCCGTGATCATTCGAGTTGTCCACTCTGCAGATTGCAAATCTCGAGTTTCTCTCTCGATTTCTCTACTCCTGATTCTTCTTTGGGAATGCTGGAGACGCTTGGAAGAGAAAACGTTCTACGAGAAAGAGTACCGCATTATCAAACACTTCGTGCTCAAAATCTGCAGCACTCGGAATTGAGAAGAGATGCATCGGTTCAAGGATCAGATCAATGA

Coding sequence (CDS)

ATGTCATCGAGCCCGCCGCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCGTGGTCAATCTCGACCATCGCAATCGTATGCATCTTCTTCCTACTGTTGAGCAACTACAGGATATTGAAACGACTGTTCCGTGGAGTGATCTCCGGTCGACCTAGGGTCGAAAACCCTACTGATCCTTCCCCGCAAATCCATGGCCATGGATTGGAGGCCTCAAGGATTCATTTGCTACCTATATCACAGTTCAAAAAGAATGAAGAATTCGAATCAACGGCAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACAATTACCGAATTGCAATCATTCGTTTCATAGTTCTTGCATCGACGCCTGGTTCCGTGATCATTCGAGTTGTCCACTCTGCAGATTGCAAATCTCGAGTTTCTCTCTCGATTTCTCTACTCCTGATTCTTCTTTGGGAATGCTGGAGACGCTTGGAAGAGAAAACGTTCTACGAGAAAGAGTACCGCATTATCAAACACTTCGTGCTCAAAATCTGCAGCACTCGGAATTGAGAAGAGATGCATCGGTTCAAGGATCAGATCAATGA

Protein sequence

MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFRGVISGRPRVENPTDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERVPHYQTLRAQNLQHSELRRDASVQGSDQ

Homology

[Close]

BLAST of Cla97C02G046440 vs. NCBI nr
Match: XP_031743630.1 (RING-H2 finger protein ATL52-like [Cucumis sativus] >KGN47355.1 hypothetical protein Csa_023057 [Cucumis sativus])

HSP 1 Score: 321.6 bits (823), Expect = 4.7e-84
Identity = 165/208 (79.33%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFR---GVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI +VCI FLLLSNYR+LK+L R   G+ +GRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIHGHGLE S I LLPISQFKKNEE EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPD-SSLGMLETLGRENVLRER 180
           LPNCNHSFHS CIDAWFR+HSSCPLCRLQ+    L FSTPD SS  MLETLGRENVLRER
Sbjct: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQV----LSFSTPDSSSSAMLETLGRENVLRER 180

Query: 181 VPHYQTLRAQNLQHSELRRDASVQGSDQ 202
           V HYQTLRAQ LQH E RRDAS+QG+DQ
Sbjct: 181 VAHYQTLRAQILQHPEFRRDASIQGTDQ 204

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BLAST of Cla97C02G046440 vs. NCBI nr
Match: XP_008448367.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >KAA0061954.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa] >TYK23976.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 321.2 bits (822), Expect = 6.2e-84
Identity = 164/207 (79.23%), Postives = 172/207 (83.09%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFR---GVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI IVC+ FLLLSNYR+LK+L R    + SGRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIH HGLE S I LLPISQFKK EE EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERV 180
           LPNCNHSFHSSCIDAWFRDHSSCPLCRLQ+ S    FSTPDSS  MLETLGREN+LRERV
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWS----FSTPDSSSAMLETLGRENILRERV 180

Query: 181 PHYQTLRAQNLQHSELRRDASVQGSDQ 202
            HYQTLRAQ LQH E RRD S+QGSDQ
Sbjct: 181 AHYQTLRAQILQHPEFRRDESIQGSDQ 203

[Close]

BLAST of Cla97C02G046440 vs. NCBI nr
Match: KAG6570731.1 (RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010575.1 RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311.6 bits (797), Expect = 4.9e-81
Identity = 159/203 (78.33%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 5   PPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFRGVISGRPRV---ENP 64
           PPPPSPVPDYSSWSPWSIS IAIVCI  LLLSNYRILK   R+  G+  GR  V   ENP
Sbjct: 8   PPPPSPVPDYSSWSPWSISIIAIVCIVVLLLSNYRILKRWCRVLHGLFCGRFVVQFDENP 67

Query: 65  TDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQLPNC 124
            DPSP++H HGLEAS I LLPISQFKKNEE ESTAS NTECAVCLGEFEEGELIK LPNC
Sbjct: 68  NDPSPEVHVHGLEASTIRLLPISQFKKNEEAESTASINTECAVCLGEFEEGELIKNLPNC 127

Query: 125 NHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERVPHYQ 184
           NHSFHSSCIDAW R+HSSCPLCRL +S+ S+D  TPDSS  MLETLGRE+V RERV +YQ
Sbjct: 128 NHSFHSSCIDAWLRNHSSCPLCRLHVSNLSIDCPTPDSSSAMLETLGREDVERERVSYYQ 187

Query: 185 TLRAQNLQHSELRRDASVQGSDQ 202
           TLRAQ LQ+ ELRRDASVQGSDQ
Sbjct: 188 TLRAQILQNPELRRDASVQGSDQ 210

[Close]

BLAST of Cla97C02G046440 vs. NCBI nr
Match: XP_023512261.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-80
Identity = 158/203 (77.83%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 5   PPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILK---RLFRGVISGRPRV---ENP 64
           PPPPSPVPDYSSWSPWSIS IAIVCI  LLLSNYRILK   R+F G+  GR  V   ENP
Sbjct: 8   PPPPSPVPDYSSWSPWSISIIAIVCIVVLLLSNYRILKRWCRVFHGLFCGRSVVQFDENP 67

Query: 65  TDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQLPNC 124
            DPSPQ+H HGLEAS I LLPISQFKKNEE ESTAS NTECAVCLGEFEEGELIK LPNC
Sbjct: 68  NDPSPQVHVHGLEASTIRLLPISQFKKNEEAESTASINTECAVCLGEFEEGELIKNLPNC 127

Query: 125 NHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERVPHYQ 184
           NHSFHSSCIDAW R+HSSCPLCRL +S+ S+D  TPDSS  MLETL RE+V  ERV +YQ
Sbjct: 128 NHSFHSSCIDAWLRNHSSCPLCRLHVSNLSIDCPTPDSSSAMLETLSREDVDGERVSYYQ 187

Query: 185 TLRAQNLQHSELRRDASVQGSDQ 202
           TLRAQ LQ+ +LRRDASVQGSDQ
Sbjct: 188 TLRAQILQNPDLRRDASVQGSDQ 210

[Close]

BLAST of Cla97C02G046440 vs. NCBI nr
Match: KAF3453818.1 (hypothetical protein FNV43_RR04259 [Rhamnella rubrinervis])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-38
Identity = 93/197 (47.21%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 9   SPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFRGVISGRPRV-------ENPTDP 68
           SP+P  S W+PW+I+++A V I  LLLS +RIL+  F    S R +         N  DP
Sbjct: 305 SPLPVPSHWNPWAIASVATVSIIILLLSYFRILQS-FCCNFSSRNQAGSLLLSETNLDDP 364

Query: 69  SPQIHGHGLEASRIHLLPISQFK-KNEEFESTASFNTECAVCLGEFEEGELIKQLPNCNH 128
           S Q H HGLE S IH LPI+QFK +N   +     +T+CAVCLGEF+EGE ++ LPNC H
Sbjct: 365 SLQFHSHGLEVSLIHSLPITQFKEENGGSKMGHQTSTDCAVCLGEFQEGEWLRFLPNCKH 424

Query: 129 SFHSSCIDAWFRDHSSCPLCRLQISSFSL-DFSTPDSSLGMLETLGRENVLRERVPHYQT 188
           +FH SCID WF  HS+CPLCR +++ F+  D   P S   +LETL RE+  +ER  HYQ 
Sbjct: 425 AFHISCIDTWFLSHSTCPLCRSEVNGFAFEDHEYPVSMYTLLETLRREDFFQERAAHYQF 484

Query: 189 LRAQNLQHSELRRDASV 197
           L++  L +S  R ++S+
Sbjct: 485 LQSTILNNSVARTESSL 500

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BLAST of Cla97C02G046440 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-19
Identity = 58/182 (31.87%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 5   PPPPSPVPDYSS-------WSPWSISTIAIVCIFFLLLSNYRILKRLFRGVISGRPRVEN 64
           PPPP  V   S+       +SP  I+ I ++   FLL+S Y  + +    V S R RV  
Sbjct: 36  PPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVFG 95

Query: 65  PTD---------PSPQIHGH---------------GLEASRIHLLPISQFKKNEEFESTA 124
            +           S   HGH               GL+ + I+ + + ++++ + F  T 
Sbjct: 96  SSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHT- 155

Query: 125 SFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFST 156
              T+C+VCLGEF +GE ++ LP C+H+FH  CID W + HS+CPLCR  I+  ++  ++
Sbjct: 156 ---TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLAS 213

[Close]

BLAST of Cla97C02G046440 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.5e-19
Identity = 67/199 (33.67%), Postives = 99/199 (49.75%), Query Frame = 0


Query: 1   MSSSPPPPSPV-----PDYSSWSPWSISTIAIVCIFFLLLSNYRILKRL--------FRG 60
           +S  PPPP P+        +S+   +++ I I+   FLL+S Y  + +           G
Sbjct: 13  LSFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILG 72

Query: 61  VISGRPRVENPTDP----SPQIHGHGLEASRIHLLPISQFKK----------NEEFESTA 120
             S   R  N  DP    SP++   GL+ S I  +PI +FKK           E  E   
Sbjct: 73  RFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEE 132

Query: 121 SFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQIS---SFSLD 169
             + EC+VCL EF++ E ++ +PNC+H FH  CID W +++++CPLCR ++S   SF  D
Sbjct: 133 KRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPD 192

[Close]

BLAST of Cla97C02G046440 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 61/180 (33.89%), Postives = 89/180 (49.44%), Query Frame = 0


Query: 6   PPPSPVPDYSSWSP--------------WSISTIAIVCIFFLLLSNY----RILKRLFRG 65
           PPP P P  +  SP               +I+ I I+   FLL+S Y    +      + 
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 66  VISGRPRVENPTDP----SPQIHGHGLEASRIHLLPISQFKKNEEF---ESTASFNTECA 125
            I  R R  +  +P    SP     GL+ S I  +P+ +FKK +     E  +  + EC+
Sbjct: 76  DIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECS 135

Query: 126 VCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQIS---SFSLDFSTPDSS 158
           VCL EF+E E ++ +PNC H FH  CID W + +++CPLCR  +S   SF+LD  +  SS
Sbjct: 136 VCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSS 195

[Close]

BLAST of Cla97C02G046440 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16
Identity = 57/179 (31.84%), Postives = 84/179 (46.93%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIAIVCIFFLLLSNYRILKRLF------------- 64
           PPPPS   D       SS+SP  I+ I I+    +L+S Y ++ +               
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLN 95

Query: 65  -----RGVISGRPRVENPTDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECA 124
                 G  S   R+          +G GL  S I  + + ++K  + F       ++C+
Sbjct: 96  LNHNGEGFFSSTQRIST--------NGDGLNESMIKSITVYKYKSGDGFVD----GSDCS 155

Query: 125 VCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLG 160
           VCL EFEE E ++ LP CNH+FH  CID W + HS+CPLCR    +F    + P +S+G
Sbjct: 156 VCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR----AFVTGVNNPTASVG 198

[Close]

BLAST of Cla97C02G046440 vs. ExPASy Swiss-Prot
Match: Q8LF65 (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-16
Identity = 51/127 (40.16%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 23  STIAIVCIFFLLLSNYRILK-RLFRGVISGRPRVENPTDPSPQIHGHGLEASRIHLLPIS 82
           +TI I+ I  L++S +   +  L R     R    +     P     GL  S I  LPI 
Sbjct: 4   TTILILLIVILMVSLHLYYRWYLLRSSPFNRTTAASTFFTDPSSTPGGLNPSIIKSLPIF 63

Query: 83  QFKKNEEFESTASFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCR 142
            F        TA F  EC+VCL EF++ E  + +PNC H+FH  CID WF  HSSCPLCR
Sbjct: 64  TFS-----AVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCR 123

Query: 143 LQISSFS 149
            QI  F+
Sbjct: 124 SQIEPFA 125

[Close]

BLAST of Cla97C02G046440 vs. ExPASy TrEMBL
Match: A0A0A0KCA5 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G303210 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 165/208 (79.33%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFR---GVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI +VCI FLLLSNYR+LK+L R   G+ +GRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIHGHGLE S I LLPISQFKKNEE EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPD-SSLGMLETLGRENVLRER 180
           LPNCNHSFHS CIDAWFR+HSSCPLCRLQ+    L FSTPD SS  MLETLGRENVLRER
Sbjct: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQV----LSFSTPDSSSSAMLETLGRENVLRER 180

Query: 181 VPHYQTLRAQNLQHSELRRDASVQGSDQ 202
           V HYQTLRAQ LQH E RRDAS+QG+DQ
Sbjct: 181 VAHYQTLRAQILQHPEFRRDASIQGTDQ 204

[Close]

BLAST of Cla97C02G046440 vs. ExPASy TrEMBL
Match: A0A5A7V3S2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00390 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.0e-84
Identity = 164/207 (79.23%), Postives = 172/207 (83.09%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFR---GVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI IVC+ FLLLSNYR+LK+L R    + SGRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIH HGLE S I LLPISQFKK EE EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERV 180
           LPNCNHSFHSSCIDAWFRDHSSCPLCRLQ+ S    FSTPDSS  MLETLGREN+LRERV
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWS----FSTPDSSSAMLETLGRENILRERV 180

Query: 181 PHYQTLRAQNLQHSELRRDASVQGSDQ 202
            HYQTLRAQ LQH E RRD S+QGSDQ
Sbjct: 181 AHYQTLRAQILQHPEFRRDESIQGSDQ 203

[Close]

BLAST of Cla97C02G046440 vs. ExPASy TrEMBL
Match: A0A1S3BIX6 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103490579 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.0e-84
Identity = 164/207 (79.23%), Postives = 172/207 (83.09%), Query Frame = 0


Query: 1   MSSSPPPPSPVPDYSSWSPWSISTIAIVCIFFLLLSNYRILKRLFR---GVISGRPRV-- 60
           M SSPPPPSPVPDYSSWSPWSISTI IVC+ FLLLSNYR+LK+L R    + SGRP V  
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  -ENPTDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQ 120
            ENP +PS QIH HGLE S I LLPISQFKK EE EST SFNTECAVCLGEFEEGELIK 
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERV 180
           LPNCNHSFHSSCIDAWFRDHSSCPLCRLQ+ S    FSTPDSS  MLETLGREN+LRERV
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWS----FSTPDSSSAMLETLGRENILRERV 180

Query: 181 PHYQTLRAQNLQHSELRRDASVQGSDQ 202
            HYQTLRAQ LQH E RRD S+QGSDQ
Sbjct: 181 AHYQTLRAQILQHPEFRRDESIQGSDQ 203

[Close]

BLAST of Cla97C02G046440 vs. ExPASy TrEMBL
Match: A0A6P3Z086 (RING-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107405104 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 84/180 (46.67%), Postives = 111/180 (61.67%), Query Frame = 0


Query: 15  SSWSPWSISTIAIVCIFFLLLSNYRILKRLFRGVISGRP-----RVENPTDPSPQIHGHG 74
           S W+PW I+++A +CI  +L S  RI+K     +   +       V NP DPS Q H HG
Sbjct: 14  SHWNPWVITSVATICIVIILFSYLRIIKTFCNNISRNQDGRRLLNVSNPDDPSLQFHSHG 73

Query: 75  LEASRIHLLPISQFKKNEEFES-TASFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCID 134
           L+ S +H LPI+QFKK+ + +S  A  N +CAVCLGEFEEGE ++ L NC H FH SCID
Sbjct: 74  LDFSFVHSLPITQFKKDNQGKSEMAQSNMDCAVCLGEFEEGEWLRHLTNCKHVFHISCID 133

Query: 135 AWFRDHSSCPLCRLQISSFSLDFSTPDSSLGMLETLGRENVLRERVPHYQTLRAQNLQHS 189
            W   +S+CP+CR ++    LD     S   +LETL RE+  RER  HYQ LR+  LQ+S
Sbjct: 134 TWCLTNSNCPICRSEVYGLGLDHEYSASMYTLLETLTREDFFRERAEHYQFLRSTILQNS 193

[Close]

BLAST of Cla97C02G046440 vs. ExPASy TrEMBL
Match: A0A061GXP2 (RING-type E3 ubiquitin transferase OS=Theobroma cacao OX=3641 GN=TCM_041911 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 4.7e-37
Identity = 90/186 (48.39%), Postives = 119/186 (63.98%), Query Frame = 0


Query: 18  SPWSISTIAIVCIFFLLLSNYRILKRLFRGVIS-------GRPRV--ENPTDPSP-QIHG 77
           SPW I++IAI+CI FL+   Y  LKRL     +       G+ R+  +   DP P Q   
Sbjct: 19  SPWVIASIAIICIIFLVFRYYGELKRLCCAFTAATYSRNQGQRRLLDDGDFDPPPSQNQS 78

Query: 78  HGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCI 137
           + +E++ IH LPISQ+KK  + E   S NT+CAVCLGEFEEG+L++ LPNC H+FH SCI
Sbjct: 79  NAMESTVIHSLPISQYKKENKEEPQPS-NTDCAVCLGEFEEGDLLRHLPNCTHAFHISCI 138

Query: 138 DAWFRDHSSCPLCRLQISSFSL--DFSTPDSSLGMLETLGRENVLRERVPHYQTLRAQNL 192
           D WF+ HSSCPLCR  +S   +  + S   S   MLETL RE+  ++R  HYQ LR++ L
Sbjct: 139 DTWFQSHSSCPLCRSSVSELPIRPECSVSISMFTMLETLRREDFSQDRAAHYQMLRSEVL 198

[Close]

BLAST of Cla97C02G046440 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 6.7e-20
Identity = 67/199 (33.67%), Postives = 99/199 (49.75%), Query Frame = 0


Query: 1   MSSSPPPPSPV-----PDYSSWSPWSISTIAIVCIFFLLLSNYRILKRL--------FRG 60
           +S  PPPP P+        +S+   +++ I I+   FLL+S Y  + +           G
Sbjct: 13  LSFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILG 72

Query: 61  VISGRPRVENPTDP----SPQIHGHGLEASRIHLLPISQFKK----------NEEFESTA 120
             S   R  N  DP    SP++   GL+ S I  +PI +FKK           E  E   
Sbjct: 73  RFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEE 132

Query: 121 SFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQIS---SFSLD 169
             + EC+VCL EF++ E ++ +PNC+H FH  CID W +++++CPLCR ++S   SF  D
Sbjct: 133 KRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPD 192

[Close]

BLAST of Cla97C02G046440 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-18
Identity = 61/180 (33.89%), Postives = 89/180 (49.44%), Query Frame = 0


Query: 6   PPPSPVPDYSSWSP--------------WSISTIAIVCIFFLLLSNY----RILKRLFRG 65
           PPP P P  +  SP               +I+ I I+   FLL+S Y    +      + 
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 66  VISGRPRVENPTDP----SPQIHGHGLEASRIHLLPISQFKKNEEF---ESTASFNTECA 125
            I  R R  +  +P    SP     GL+ S I  +P+ +FKK +     E  +  + EC+
Sbjct: 76  DIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECS 135

Query: 126 VCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQIS---SFSLDFSTPDSS 158
           VCL EF+E E ++ +PNC H FH  CID W + +++CPLCR  +S   SF+LD  +  SS
Sbjct: 136 VCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSS 195

[Close]

BLAST of Cla97C02G046440 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-18
Identity = 57/179 (31.84%), Postives = 84/179 (46.93%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIAIVCIFFLLLSNYRILKRLF------------- 64
           PPPPS   D       SS+SP  I+ I I+    +L+S Y ++ +               
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLN 95

Query: 65  -----RGVISGRPRVENPTDPSPQIHGHGLEASRIHLLPISQFKKNEEFESTASFNTECA 124
                 G  S   R+          +G GL  S I  + + ++K  + F       ++C+
Sbjct: 96  LNHNGEGFFSSTQRIST--------NGDGLNESMIKSITVYKYKSGDGFVD----GSDCS 155

Query: 125 VCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLG 160
           VCL EFEE E ++ LP CNH+FH  CID W + HS+CPLCR    +F    + P +S+G
Sbjct: 156 VCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR----AFVTGVNNPTASVG 198

[Close]

BLAST of Cla97C02G046440 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-17
Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 22  ISTIAIVCIFFLLLSNYRILKRLFRGVISGRPRVENPTDPSPQ----------------I 81
           +S I  +C    LL  Y + K+  R  +S  P   N ++ +P+                +
Sbjct: 60  LSVIFFICSILHLLVRYYLKKK--RSNLSSSP---NESNQNPEFSDSDTYQRQLQQLFHL 119

Query: 82  HGHGLEASRIHLLPISQFKKNEEFESTASFNTECAVCLGEFEEGELIKQLPNCNHSFHSS 141
           H  GL+ + I  LP+  +K   E + T     +CAVCL EF E + ++ LPNC+H+FH  
Sbjct: 120 HDSGLDQALIDALPVFLYK---EIKGTKE-PFDCAVCLCEFSEDDKLRLLPNCSHAFHID 179

Query: 142 CIDAWFRDHSSCPLCRLQISSFSLDFSTPDSSLG 160
           CID W   +S+CPLCR  + S    F  PD + G
Sbjct: 180 CIDTWLLSNSTCPLCRGTLFSLGHQFEYPDFNFG 204

[Close]

BLAST of Cla97C02G046440 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-17
Identity = 50/127 (39.37%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 23  STIAIVCIFFLLLSNYRILK-RLFRGVISGRPRVENPTDPSPQIHGHGLEASRIHLLPIS 82
           +TI I+ I  L++S +   +  L R     R    +     P     GL  S I  LPI 
Sbjct: 4   TTILILLIVILMVSLHLYYRWYLLRSSPFNRTTAASTFFTDPSSTPGGLNPSIIKSLPIF 63

Query: 83  QFKKNEEFESTASFNTECAVCLGEFEEGELIKQLPNCNHSFHSSCIDAWFRDHSSCPLCR 142
            F        TA F  EC+VCL EF++ E  + +PNC H+FH  CID WF  HSSCPLCR
Sbjct: 64  TFS-----AVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHSHSSCPLCR 123

Query: 143 LQISSFS 149
             I  F+
Sbjct: 124 SLIEPFA 125

The following BLAST results are available for this feature:

BLAST of Cla97C02G046440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743630.1	4.7e-84	79.33	RING-H2 finger protein ATL52-like [Cucumis sativus] >KGN47355.1 hypothetical pro...	[more]
XP_008448367.1	6.2e-84	79.23	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >KAA0061954.1 RING-H...	[more]
KAG6570731.1	4.9e-81	78.33	RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023512261.1	1.9e-80	77.83	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
KAF3453818.1	1.3e-38	47.21	hypothetical protein FNV43_RR04259 [Rhamnella rubrinervis]	[more]

BLAST of Cla97C02G046440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XLY8	3.2e-19	31.87	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9LSW9	9.5e-19	33.67	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	1.8e-17	33.89	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LF64	1.2e-16	31.84	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q8LF65	1.5e-16	40.16	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]

BLAST of Cla97C02G046440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCA5	2.3e-84	79.33	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G303210 PE...	[more]
A0A5A7V3S2	3.0e-84	79.23	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BIX6	3.0e-84	79.23	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103490579 PE=3 ...	[more]
A0A6P3Z086	1.5e-38	46.67	RING-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107405104 ...	[more]
A0A061GXP2	4.7e-37	48.39	RING-type E3 ubiquitin transferase OS=Theobroma cacao OX=3641 GN=TCM_041911 PE=3...	[more]

BLAST of Cla97C02G046440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43420.1	6.7e-20	33.67	RING/U-box superfamily protein	[more]
AT1G04360.1	1.3e-18	33.89	RING/U-box superfamily protein	[more]
AT5G17600.1	8.2e-18	31.84	RING/U-box superfamily protein	[more]
AT1G23980.1	5.3e-17	33.12	RING/U-box superfamily protein	[more]
AT4G15975.1	5.3e-17	39.37	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 2.2E-7 score: 40.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 3.2E-13 score: 49.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 12.563043
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 70..149 e-value: 4.2E-21 score: 76.0
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 14..154
None	No IPR available	PANTHER	PTHR45676:SF107	RING/U-BOX SUPERFAMILY PROTEIN	coord: 14..154
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 98..141 e-value: 1.95353E-18 score: 73.1049
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 84..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G046440.1	Cla97C02G046440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane