Cla97C02G033500 (gene) Watermelon (97103) v2.5

Overview
NameCla97C02G033500
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionCytochrom_C_asm domain-containing protein
LocationCla97Chr02: 7022219 .. 7022884 (+)
RNA-Seq ExpressionCla97C02G033500
SyntenyCla97C02G033500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGAAGAACCGCCATAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTACACCTACGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGAACTTATTGCAGGGCTGGTTATTCAGAGCCAGCAATTGGCTGCCGGATTTCGTCCCGCAACTAGAAGAAGATCGCTTCGGGGCTGCCCCAGCTCCCAACTCATCTGGAGAATGCATTGGGTCCCTGTGTTGATTTGATGATCCACTAGTTGATTCAAGATCTGGGTGATTCACCCCATTTCACTAGTGCCGAAATAGGCCGGGAATCCGAAATGACGGCATAGCACAATTCTTTTTTTCTATGAAAGCAGGAAAGTTGAGTTCCAAATTCTTCCTTATTCCATGAGATCTAGAAGCACTTCCGCAACCTTCTCTCTCTCCTCCCTATCGCTCTTTTTTTTTTACTTCTTTCAAAGGGGAATGCAGGCCTTCCTTAGAAGTTGTCGCTCGATCGAAAGGATATAACAAACACATACGAAACCTTAGCTTCGCTGACTTTCTGAGGTATAACCTTCGCCACGACATTAGTGGCTTAGCTCTTCGCGCTTCCCGCAGGCTTTTTTTATAG

mRNA sequence

ATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGAAGAACCGCCATAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTACACCTACGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGAACTTATTGCAGGGCTGGTTATTCAGAGCCAGCAATTGGCTGCCGGATTTCGTCCCGCAACTAGAAGAAGATCGCTTCGGGGCTGCCCCAGCTCCCAACTCATCTGGAGAATGCATTGGGCCTTCCTTAGAAGTTGTCGCTCGATCGAAAGGATATAACAAACACATACGAAACCTTAGCTTCGCTGACTTTCTGAGGTATAACCTTCGCCACGACATTAGTGGCTTAGCTCTTCGCGCTTCCCGCAGGCTTTTTTTATAG

Coding sequence (CDS)

ATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGAAGAACCGCCATAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTACACCTACGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGAACTTATTGCAGGGCTGGTTATTCAGAGCCAGCAATTGGCTGCCGGATTTCGTCCCGCAACTAGAAGAAGATCGCTTCGGGGCTGCCCCAGCTCCCAACTCATCTGGAGAATGCATTGGGCCTTCCTTAGAAGTTGTCGCTCGATCGAAAGGATATAACAAACACATACGAAACCTTAGCTTCGCTGACTTTCTGAGGTATAACCTTCGCCACGACATTAGTGGCTTAGCTCTTCGCGCTTCCCGCAGGCTTTTTTTATAG

Protein sequence

MPAASSGRKESLICRSLEGRTAIKRDGCGAKYSCTPTSLGSRATPPRYVMEELNLLQGWLFRASNWLPDFVPQLEEDRFGAAPAPNSSGECIGPSLEVVARSKGYNKHIRNLSFADFLRYNLRHDISGLALRASRRLFL
Homology
[Close]
BLAST of Cla97C02G033500 vs. NCBI nr
Match: GER38289.1 (cytochrome c biogenesis FN [Striga asiatica])

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-13
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 12  LICRSLEGRTAIKRDGCGAKYSCTPTSLGSRATPPRYVMEELNLLQGWLFRASNWLPDFV 71
           L+   ++ + +++R      YSC PTS  S A+PP Y+MEEL+LL  WLFRASNWL DFV
Sbjct: 528 LLFSQMKQQASVRRTYKKEMYSCAPTSFDSGASPPPYLMEELSLLLSWLFRASNWLSDFV 587

Query: 72  PQLEEDRFG 81
           PQLEED FG
Sbjct: 588 PQLEEDGFG 596

[Close]
BLAST of Cla97C02G033500 vs. NCBI nr
Match: GEU85136.1 (mediator of RNA polymerase II transcription subunit 20A [Tanacetum cinerariifolium])

HSP 1 Score: 57.8 bits (138), Expect = 8.8e-05
Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 0 

Query: 23  IKRDGCGAKYSCTPTSLGSRATPPRYVMEELNLLQGW-----LFRASNWLPDFVPQL--E 82
           ++  GCG K+SC PTSLG RATP  YV++EL+ L GW         S     FVPQL   
Sbjct: 11  VRESGCGVKHSCAPTSLGLRATPD-YVIKELSFLLGWDPPFQKVTGSTVGSKFVPQLWCR 70

Query: 83  EDRFGAAPAPNSS---GECIGPSLEVVA 101
            + + +A  P+S    G  +GP L   A
Sbjct: 71  YNHYFSAIVPHSKRLLGRPLGPKLYATA 97

[Close]
BLAST of Cla97C02G033500 vs. ExPASy TrEMBL
Match: A0A6N2LBY9 (Cytochrom_C_asm domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS169972 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 30  AKYSCTPTSLGSRATPPRYVMEELNLLQGWLFRASNWLPDFVPQLEEDRFG 81
           A YSC PT+LGSRATPPRYVMEELN L G + RASNWL DF P+LE+DRFG
Sbjct: 140 ASYSCAPTALGSRATPPRYVMEELNFLLGLVLRASNWLLDFDPKLEKDRFG 190

[Close]
BLAST of Cla97C02G033500 vs. ExPASy TrEMBL
Match: A0A6N2KW62 (Cytochrom_C_asm domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS146708 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 30  AKYSCTPTSLGSRATPPRYVMEELNLLQGWLFRASNWLPDFVPQLEEDRFG 81
           A YSC PT+LGSRATPPRYVMEELN L G + RASNWL DF P+LE+DRFG
Sbjct: 511 ASYSCAPTALGSRATPPRYVMEELNFLLGLVLRASNWLLDFDPKLEKDRFG 561

[Close]
BLAST of Cla97C02G033500 vs. ExPASy TrEMBL
Match: A0A6N2KX72 (Cytochrom_C_asm domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS87704 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 30  AKYSCTPTSLGSRATPPRYVMEELNLLQGWLFRASNWLPDFVPQLEEDRFG 81
           A YSC PT+LGSRATPPRYVMEELN L G + RASNWL DF P+LE+DRFG
Sbjct: 746 ASYSCAPTALGSRATPPRYVMEELNFLLGLVLRASNWLLDFDPKLEKDRFG 796

[Close]
BLAST of Cla97C02G033500 vs. ExPASy TrEMBL
Match: A0A6N2K5R7 (Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS28816 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 30  AKYSCTPTSLGSRATPPRYVMEELNLLQGWLFRASNWLPDFVPQLEEDRFG 81
           A YSC PT+LGSRATPPRYVMEELN L G + RASNWL DF P+LE+DRFG
Sbjct: 800 ASYSCAPTALGSRATPPRYVMEELNFLLGLVLRASNWLLDFDPKLEKDRFG 850

[Close]
BLAST of Cla97C02G033500 vs. ExPASy TrEMBL
Match: A0A6N2KI65 (Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS87796 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 30  AKYSCTPTSLGSRATPPRYVMEELNLLQGWLFRASNWLPDFVPQLEEDRFG 81
           A YSC PT+LGSRATPPRYVMEELN L G + RASNWL DF P+LE+DRFG
Sbjct: 780 ASYSCAPTALGSRATPPRYVMEELNFLLGLVLRASNWLLDFDPKLEKDRFG 830

The following BLAST results are available for this feature:
BLAST of Cla97C02G033500 vs. NCBI nr
Match NameE-valueIdentityDescription
GER38289.12.3e-1356.52cytochrome c biogenesis FN [Striga asiatica][more]
GEU85136.18.8e-0540.91mediator of RNA polymerase II transcription subunit 20A [Tanacetum cinerariifoli... [more]
BLAST of Cla97C02G033500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C02G033500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6N2LBY95.0e-1476.47Cytochrom_C_asm domain-containing protein (Fragment) OS=Salix viminalis OX=40686... [more]
A0A6N2KW625.0e-1476.47Cytochrom_C_asm domain-containing protein (Fragment) OS=Salix viminalis OX=40686... [more]
A0A6N2KX725.0e-1476.47Cytochrom_C_asm domain-containing protein (Fragment) OS=Salix viminalis OX=40686... [more]
A0A6N2K5R75.0e-1476.47Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO... [more]
A0A6N2KI655.0e-1476.47Cytochrom_C_asm domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO... [more]
BLAST of Cla97C02G033500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G033500.1Cla97C02G033500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity