ClCG11G011980 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G011980
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	La-related protein 6 isoform 1
Location	CG_Chr11: 24466379 .. 24469416 (-)
RNA-Seq Expression	ClCG11G011980
Synteny	ClCG11G011980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAAATCCCAAAAATCTCAACTCAAACCCTTCTACTTCCTTCCATTTCCTCCATTGAAGCACCCTACTCCATTTCTTCCAACCATGTCATTAGCTTCATCGCAACTCAGCTTTCTCGCCACCTCCTTCCCCTTCTCCGCTCGCAGCCCTCCACGGACCGACAACCTTCTCCATTCTTCCAATGCCGTCGTCTCTTCCAAACTCCCTCCCGCTGCCGATGATCCCAAGTAAGTTCGATCGCCCAATTTCTTCGCCATTTCGTTTCGCTTTTGAGTCAGTTTAGGTTTCTGATTCATTGATTCAATCGGTTGCTGGTTTGTGATGTGTATTAGTGGATCATTAATAAAGAGGGAAAATCAGAATCGGCTGGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGAGTTTTGACATTGGGATCAGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGCCAGGCTTTCCGTTCAGCGGCTCCTCGGTCTTCGTCCCCGAGAATCAACAATAATTCCAGGTAATATTTGGATTTGAATTTGGATTGAAGATTGGCTTCAACTTGGTTTGATTTATTTAATGAGTGAATACCTAGAAGTGTTCATGTGAAAAATTAACTAAGGAGATTAATTATATCGCAGTCTATCGATGGTGTATTTTACTATTAATTGTAAATATTTTCACCAGTTTTGTCATTTAAGATAATTTCTCAAAAATAATAAACTAACAATAGAGGCTAAAGTTAAGATTTATTGAGAGTATAGAATCTAAAGTTAAACATTTAAAAGAATAGGAACTAAAATTGAACTAGTCTCAAAGTTTAAGAACCAAAATGGTTCTTTTTATTGTGTTGGACCTTGATGTTTATAATTTGAACTTAGTTTTGACACAACTAAGATATAAGGATTTGAACCTACAACTTCAAGGAAAAGAGTATATGGCAATCATTGTTAAACTAAGTTCATGTAGGCAGCTTAGTTTCAATTTAGATTCTATACTTTTTAAGTTTTAATTTGATTCCTATGATTTGGACTTAGTTTTTACTTTGATGTATATGGTTAGGTTGAACATTACACTAGTCCCTATTATTATCCTATTAAATAATTGACTTGTTTTTTTTTTTTTTTTATTATTTATTCAATCATGAGTTATTATTTTCTGATTAATTTGTTATATTAAGTCATAAAGCTGAGTGAAAAATAAGAGAAACGAAGTCAATAGAAAAGAATTTAAGAATGGTTACCAAACTAAATAAAACAATTTAACCTAGTAAATTATAAAAAGTATTAACAAAAACAACAGATAGAATGGACATAGTTTAATTGGTATATTGTTGTACTACCAATTTTGGAGTTAGAAGTTCAATTCACTACTCCATATATTGGAATAAGAAGAGAAAAGAAAGAAAAAAAAAATTAATTGTAGAAGTCAAGTGACTAAAATAAAACATATGAAAGATTAAGATTTAAATGTTTTTCTCACCGATAAGATATTAGAGGAACTCACTCCTTGCATTCTTGTTCATAGCCCATCTTATTAATTCTTGGTGAGACTTCCACTAAAGTCAAATGTTGCGAGACAACAATGATTTTAAGATATTGAGGCCTTCATTGATAAAAAATTTTTGTTTTTAGTTATTGAATTTAATGTTTTTTCTTCTTTTTTTTACAGTTTCTATATAATTTTTTTTTTTAAGAATATTTGAATTCTTAGTCTTGAAAAATAAAATAAGTTCTTAAAAAATTACCGCCACATTTAATAATCATTTGGATTTTTGTTTTTGGTATTTGAAAATTGCTATGGTTTTCTCACAATTTCTTTACAATAATTTCATTTCTTCTTTTTTTTTTTTTAAACATTTGAATTCTTAGCCAAATTTTAAAAACAAAAATAAGTGTTTAAAGCCTATTTTTTCAATTTTCTAAACTTAGCTTGAATTTTGAAAACAAAAATGAAACAAAGAAGCCAATAGGTAGAAATAATGTTTATAAGCTTAATTTTCAAAAACCATACGATAATCAAACATGATCAACTTTTTTAGTTTTCAAACTTGACGTAGATTTTGTAAGCAATTTTAGGAACTTGATAACAAAACAAAAAAACTCATAAGCATATAAGTGGTGTTTATAAACTTAATTTTTAAAAACCAAAAACTAAGGCCCCATTTGGTAATCATTTAGTTTTTTAAAATTAAGCCTTTAGGTACTACTTCCACTTCTAAATTTCTTCCTTTGTTGTCTAGTTTTTACTAATGATTTAAAAAACCAAGCCAAATTTTGAAAACTAAACAAAATAACTTTTAAAAACTTATTTTTGTTTTTGGAATTTAGCTAAGAATTCAACCATTGTACTTAAAGAAAGATGCAAATCATTGTAGAAAATGTGGAGAAAATAGGCTTAATTTTCAAAAACCAAAAACAAACAACAAAATGGTTACCAGATAAGGCTTAAATTTGGTATAAAAAGGGACCTAAGTGCTCTACCAAATAATTGAACTCTAAAATTTTAGAGGATATTTACAAATATTTCAAACCCTTACCACCAAAAGGCACCTTTCACTATTTTCAAATGCAAAGGACTGAATTCTCATATAGCTAGATTGATTGATTTTGCAGGACAAATATCTACATAAATCCAAGAGTAGCACCTCCTTTAGTGGGTGGCTATGGGTTTGGGTATGGTGTACCATACTATGGTGGATGGGGATGGTCACCATTTTCATTCTTTGCACCTTCCCCAACTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTTTTCTCTTCATTTTGCTTGGTACTGTTGCAGCTTTTGTGAGGAAATTCTTTGGAAGAAGGGAAGAAGATGATGATTATTAATAACATCCAAGTCCTTGGATGGGATGTTGGATTCATACTTTATATTCACACTTTTGAACTTAGCTTTTTTGTGGGAGAGTTTTTCTTGGTCTTATTTTATAGGGTCAAACTTGTCACATAATGTATTTGTATAAGGGGAGATGCTATGTAATTACAAAGCTTAATGTATAAAAT

mRNA sequence

TCACAAATCCCAAAAATCTCAACTCAAACCCTTCTACTTCCTTCCATTTCCTCCATTGAAGCACCCTACTCCATTTCTTCCAACCATGTCATTAGCTTCATCGCAACTCAGCTTTCTCGCCACCTCCTTCCCCTTCTCCGCTCGCAGCCCTCCACGGACCGACAACCTTCTCCATTCTTCCAATGCCGTCGTCTCTTCCAAACTCCCTCCCGCTGCCGATGATCCCAATGGATCATTAATAAAGAGGGAAAATCAGAATCGGCTGGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGAGTTTTGACATTGGGATCAGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGCCAGGCTTTCCGTTCAGCGGCTCCTCGGTCTTCGTCCCCGAGAATCAACAATAATTCCAGGACAAATATCTACATAAATCCAAGAGTAGCACCTCCTTTAGTGGGTGGCTATGGGTTTGGGTATGGTGTACCATACTATGGTGGATGGGGATGGTCACCATTTTCATTCTTTGCACCTTCCCCAACTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTTTTCTCTTCATTTTGCTTGGTACTGTTGCAGCTTTTGTGAGGAAATTCTTTGGAAGAAGGGAAGAAGATGATGATTATTAATAACATCCAAGTCCTTGGATGGGATGTTGGATTCATACTTTATATTCACACTTTTGAACTTAGCTTTTTTGTGGGAGAGTTTTTCTTGGTCTTATTTTATAGGGTCAAACTTGTCACATAATGTATTTGTATAAGGGGAGATGCTATGTAATTACAAAGCTTAATGTATAAAAT

Coding sequence (CDS)

ATGTCATTAGCTTCATCGCAACTCAGCTTTCTCGCCACCTCCTTCCCCTTCTCCGCTCGCAGCCCTCCACGGACCGACAACCTTCTCCATTCTTCCAATGCCGTCGTCTCTTCCAAACTCCCTCCCGCTGCCGATGATCCCAATGGATCATTAATAAAGAGGGAAAATCAGAATCGGCTGGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGAGTTTTGACATTGGGATCAGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGCCAGGCTTTCCGTTCAGCGGCTCCTCGGTCTTCGTCCCCGAGAATCAACAATAATTCCAGGACAAATATCTACATAAATCCAAGAGTAGCACCTCCTTTAGTGGGTGGCTATGGGTTTGGGTATGGTGTACCATACTATGGTGGATGGGGATGGTCACCATTTTCATTCTTTGCACCTTCCCCAACTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTTTTCTCTTCATTTTGCTTGGTACTGTTGCAGCTTTTGTGAGGAAATTCTTTGGAAGAAGGGAAGAAGATGATGATTATTAA

Protein sequence

MSLASSQLSFLATSFPFSARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIKRENQNRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAFVRKFFGRREEDDDY

Homology

[Close]

BLAST of ClCG11G011980 vs. NCBI nr
Match: XP_038889537.1 (uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida])

HSP 1 Score: 331.6 bits (849), Expect = 4.4e-87
Identity = 174/194 (89.69%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MSLASSQLSFLAT--SFPFSARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIKRENQN 60
           MSLASSQLSFL+T  SF FS R+P RT+NLLHSSNA VS KLPPAADDPNG L+ R ++N
Sbjct: 1   MSLASSQLSFLSTAFSFSFSVRTPRRTNNLLHSSNAGVSCKLPPAADDPNG-LLNRGSEN 60

Query: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN 120
           RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN
Sbjct: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN 120

Query: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSP VAVGIGGGFD+LFLFILLGTVAAF
Sbjct: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAAF 180

Query: 181 VRKFFGRREEDDDY 193
           VR+FFGRRE+DDDY
Sbjct: 181 VRRFFGRREDDDDY 193

[Close]

BLAST of ClCG11G011980 vs. NCBI nr
Match: XP_038889538.1 (uncharacterized protein LOC120079434 isoform X2 [Benincasa hispida])

HSP 1 Score: 324.7 bits (831), Expect = 5.3e-85
Identity = 172/194 (88.66%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MSLASSQLSFLAT--SFPFSARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIKRENQN 60
           MSLASSQLSFL+T  SF FS R+P RT+NLLHSSNA VS KLPPAADDP GS      +N
Sbjct: 1   MSLASSQLSFLSTAFSFSFSVRTPRRTNNLLHSSNAGVSCKLPPAADDPKGS------EN 60

Query: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN 120
           RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN
Sbjct: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN 120

Query: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSP VAVGIGGGFD+LFLFILLGTVAAF
Sbjct: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAAF 180

Query: 181 VRKFFGRREEDDDY 193
           VR+FFGRRE+DDDY
Sbjct: 181 VRRFFGRREDDDDY 188

[Close]

BLAST of ClCG11G011980 vs. NCBI nr
Match: XP_008451528.1 (PREDICTED: uncharacterized protein LOC103492785 [Cucumis melo] >KAA0048618.1 La-related protein 6 isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.4e-77
Identity = 161/193 (83.42%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MSLASSQLSFLATSFPFSARSPPRTDN--LLHSSNAVVSSKLPPAADDPNGSLIKRENQN 60
           MSL SSQLSFL+T+F FS  SPPR  N  LL+SS+AVVS KLPPA+DDP G      N+N
Sbjct: 1   MSLPSSQLSFLSTAFSFSF-SPPRAHNLRLLYSSSAVVSCKLPPASDDPKG------NEN 60

Query: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN 120
           R+AKLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYIN
Sbjct: 61  RVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYIN 120

Query: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGG DVLF FILLG+VAAF
Sbjct: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAF 180

Query: 181 VRKFFGRREEDDD 192
           VRK  GRRE DDD
Sbjct: 181 VRKILGRREADDD 186

[Close]

BLAST of ClCG11G011980 vs. NCBI nr
Match: XP_022969609.1 (uncharacterized protein LOC111468585 [Cucurbita maxima])

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-75
Identity = 158/193 (81.87%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MSLASSQLSFLATSFPF-SARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIKRENQNR 60
           MSLASSQLSFL+T+  F SA +P R++N+LHS + +++SKLPP AD+PNG  ++R N+NR
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADNPNG--LERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFDVL LFI LGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRKFFGRREEDDD 192
           VR+F G REEDDD
Sbjct: 181 VRRFLGGREEDDD 189

[Close]

BLAST of ClCG11G011980 vs. NCBI nr
Match: XP_023536753.1 (uncharacterized protein LOC111798034 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.6 bits (745), Expect = 5.0e-75
Identity = 157/193 (81.35%), Postives = 174/193 (90.16%), Query Frame = 0


Query: 1   MSLASSQLSFLATSFPF-SARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIKRENQNR 60
           MSLASSQLSFL+T+  F SA +P R++N+LHS + +++SKLPP ADDPNG  ++R N+NR
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNG--LERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFDVL LFI LGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRKFFGRREEDDD 192
           VR+F G R EDDD
Sbjct: 181 VRRFLGGRGEDDD 189

[Close]

BLAST of ClCG11G011980 vs. ExPASy TrEMBL
Match: A0A5A7U097 (La-related protein 6 isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00020 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 161/193 (83.42%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MSLASSQLSFLATSFPFSARSPPRTDN--LLHSSNAVVSSKLPPAADDPNGSLIKRENQN 60
           MSL SSQLSFL+T+F FS  SPPR  N  LL+SS+AVVS KLPPA+DDP G      N+N
Sbjct: 1   MSLPSSQLSFLSTAFSFSF-SPPRAHNLRLLYSSSAVVSCKLPPASDDPKG------NEN 60

Query: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN 120
           R+AKLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYIN
Sbjct: 61  RVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYIN 120

Query: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGG DVLF FILLG+VAAF
Sbjct: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAF 180

Query: 181 VRKFFGRREEDDD 192
           VRK  GRRE DDD
Sbjct: 181 VRKILGRREADDD 186

[Close]

BLAST of ClCG11G011980 vs. ExPASy TrEMBL
Match: A0A1S3BRQ8 (uncharacterized protein LOC103492785 OS=Cucumis melo OX=3656 GN=LOC103492785 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 161/193 (83.42%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MSLASSQLSFLATSFPFSARSPPRTDN--LLHSSNAVVSSKLPPAADDPNGSLIKRENQN 60
           MSL SSQLSFL+T+F FS  SPPR  N  LL+SS+AVVS KLPPA+DDP G      N+N
Sbjct: 1   MSLPSSQLSFLSTAFSFSF-SPPRAHNLRLLYSSSAVVSCKLPPASDDPKG------NEN 60

Query: 61  RLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYIN 120
           R+AKLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYIN
Sbjct: 61  RVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYIN 120

Query: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGG DVLF FILLG+VAAF
Sbjct: 121 PRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAAF 180

Query: 181 VRKFFGRREEDDD 192
           VRK  GRRE DDD
Sbjct: 181 VRKILGRREADDD 186

[Close]

BLAST of ClCG11G011980 vs. ExPASy TrEMBL
Match: A0A6J1I348 (uncharacterized protein LOC111468585 OS=Cucurbita maxima OX=3661 GN=LOC111468585 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.9e-76
Identity = 158/193 (81.87%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MSLASSQLSFLATSFPF-SARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIKRENQNR 60
           MSLASSQLSFL+T+  F SA +P R++N+LHS + +++SKLPP AD+PNG  ++R N+NR
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADNPNG--LERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFDVL LFI LGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRKFFGRREEDDD 192
           VR+F G REEDDD
Sbjct: 181 VRRFLGGREEDDD 189

[Close]

BLAST of ClCG11G011980 vs. ExPASy TrEMBL
Match: A0A6J1FDE3 (uncharacterized protein LOC111444353 OS=Cucurbita moschata OX=3662 GN=LOC111444353 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.4e-75
Identity = 157/193 (81.35%), Postives = 174/193 (90.16%), Query Frame = 0


Query: 1   MSLASSQLSFLATSFPF-SARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIKRENQNR 60
           MSLASSQLSFL+T+  F SA +P R++N+LHS + +++SKLPP ADDPNG  ++R N+NR
Sbjct: 1   MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNG--LERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFDVL LFI LGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRKFFGRREEDDD 192
           VR+F G R EDDD
Sbjct: 181 VRRFLGGRGEDDD 189

[Close]

BLAST of ClCG11G011980 vs. ExPASy TrEMBL
Match: A0A6J1DIH1 (uncharacterized protein LOC111020818 OS=Momordica charantia OX=3673 GN=LOC111020818 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.5e-74
Identity = 157/197 (79.70%), Postives = 168/197 (85.28%), Query Frame = 0


Query: 1   MSLASSQLSF----LATSFPFSARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIK--R 60
           M+LASSQ SF    L+ +   +AR P R   LLHSSNA VSSKLPP ADDP+G   K   
Sbjct: 1   MALASSQQSFLTNVLSAAAAAAARCPRRMRKLLHSSNAAVSSKLPP-ADDPDGFSFKSGS 60

Query: 61  ENQNRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTN 120
            N+NRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTN
Sbjct: 61  GNENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTN 120

Query: 121 IYINPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGT 180
           IYINP VAPPLVGGYGFGYGVPYYGGWGWSPFSFFAP P+VAVGIGGGFD+LFLFI LG+
Sbjct: 121 IYINPPVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPGPSVAVGIGGGFDLLFLFIFLGS 180

Query: 181 VAAFVRKFFGRREEDDD 192
           VAA VR+FFG RE+DDD
Sbjct: 181 VAAVVRRFFGTREDDDD 196

[Close]

BLAST of ClCG11G011980 vs. TAIR 10
Match: AT5G57345.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 194.9 bits (494), Expect = 5.9e-50
Identity = 108/190 (56.84%), Postives = 135/190 (71.05%), Query Frame = 0


Query: 2   SLASSQLSFLATSFPFSARSPPRTDNLLHSSNAVVSSKLPPAADDPNGSLIKRENQNRLA 61
           ++ASS+ SFL+ +F F     P+++  L   N++         DD   S   R+N+N+LA
Sbjct: 5   AIASSRQSFLSNNFSFQHSFKPKSNVNLTRPNSICCKS--SHHDDETDS--SRKNENQLA 64

Query: 62  KLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRV 121
           KLAI TLA GVL LGSV DA AAK+GGR+GGQAFRS+APR   PRINN SRTNIY+NP+V
Sbjct: 65  KLAIATLAVGVLALGSVGDAFAAKSGGRIGGQAFRSSAPR-PPPRINNRSRTNIYVNPQV 124

Query: 122 APPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAFVRK 181
           APPL+GGYG+G     YGG+GWSPFSFFAP P VAVG+GGGFD+L LF+  G  +A  R 
Sbjct: 125 APPLIGGYGYG-----YGGYGWSPFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVARN 184

Query: 182 FFGRREEDDD 192
           FF  R ++DD
Sbjct: 185 FFRSRNDEDD 184

[Close]

BLAST of ClCG11G011980 vs. TAIR 10
Match: AT1G54520.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 3.8e-04
Identity = 47/135 (34.81%), Postives = 60/135 (44.44%), Query Frame = 0


Query: 60  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 119
           L K AI  +  G+L     + A AA +GGR+GG +F      SS  R +++S +  Y  P
Sbjct: 83  LKKPAIAAVLLGLLLFYDPNSALAA-SGGRIGGNSF------SSRSRSSSSSSSQSYSVP 142

Query: 120 RVAPPLVGGYGFGYG---VPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVA 179
           R + P      F Y     PYYG    SPF      P V  G GG     F  IL+G  A
Sbjct: 143 RTSNP-----SFSYSARTAPYYGP---SPFGGGFVGPAVGFGFGGFSS--FSLILVGFAA 200

Query: 180 -AFVRKFFGRREEDD 191
              V  F   R +DD
Sbjct: 203 FVLVSGFLSDRSQDD 200

The following BLAST results are available for this feature:

BLAST of ClCG11G011980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889537.1	4.4e-87	89.69	uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida]	[more]
XP_038889538.1	5.3e-85	88.66	uncharacterized protein LOC120079434 isoform X2 [Benincasa hispida]	[more]
XP_008451528.1	2.4e-77	83.42	PREDICTED: uncharacterized protein LOC103492785 [Cucumis melo] >KAA0048618.1 La-...	[more]
XP_022969609.1	1.0e-75	81.87	uncharacterized protein LOC111468585 [Cucurbita maxima]	[more]
XP_023536753.1	5.0e-75	81.35	uncharacterized protein LOC111798034 [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG11G011980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G011980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U097	1.2e-77	83.42	La-related protein 6 isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BRQ8	1.2e-77	83.42	uncharacterized protein LOC103492785 OS=Cucumis melo OX=3656 GN=LOC103492785 PE=...	[more]
A0A6J1I348	4.9e-76	81.87	uncharacterized protein LOC111468585 OS=Cucurbita maxima OX=3661 GN=LOC111468585...	[more]
A0A6J1FDE3	2.4e-75	81.35	uncharacterized protein LOC111444353 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A6J1DIH1	3.5e-74	79.70	uncharacterized protein LOC111020818 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of ClCG11G011980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57345.1	5.9e-50	56.84	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G54520.1	3.8e-04	34.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..110
None	No IPR available	PANTHER	PTHR37768:SF2	OS06G0694800 PROTEIN	coord: 1..191
None	No IPR available	PANTHER	PTHR37768	OS06G0694800 PROTEIN	coord: 1..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G011980.1	ClCG11G011980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071470	cellular response to osmotic stress
biological_process	GO:0034599	cellular response to oxidative stress
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane