ClCG11G006160 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G006160
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA replication complex GINS protein PSF3-like
Location	CG_Chr11: 6700118 .. 6702490 (-)
RNA-Seq Expression	ClCG11G006160
Synteny	ClCG11G006160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTTATTATGATATTGATGACATTCTAGCAGAGGAAGAGGTCAATATCTTTACTTTTTACCTGATAAAGTCTCATAAACTTGCAATCTCAATATTCAGTCTTTGTGTGCCCTCTTGACAGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTGAGTTCCAGCGATTAGTAGGAGATATGTTATGGATGCTGAATGACAAACTTATGTTTTCCTATTTGGTGTAATTTCAGGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGGTAGCAATAGCCATTACATTCAAGCTCTACAACCAATAATTTCAATAGACCTGTAGTGTTCTAGATTTTTTGGGAGCTTGAGAGAAGGAGGATTTTATTTACTATGGCTCCACTTACTCCCTAAAAACTGCCCTGCCTAGACACTGAATTTTGATTCTTTTTCCTCTAATATAAAAATAATGTTATTTATTTGCGATTGTGTTAATTTGTTTTTTCATCTGCTAATTATTTACGAGCATTAACTTCTGAACTGAAATCTGAAGACTACTGTAATTAGCAAGATTTGATGAGGTCATTTTTAAAGTTAATGATGTTATTCTCATGAATGACATTACATGGGAGACAAATGATGTTAATGGCCTTACCTTCCAGTTTCATTAATTAAAACGAAAGTAATGGCTATTTCTCCTTGTTCCTGTCCTGATGATCTGTCATGGCCATGAAATTGTAGTATTCCAAGCTTTTTAAGATTTGGTTTATAAGAATATCTTTTAGAATGCTCGCACTTGATCCGTAAAAGCTGACGCCGAAAGAAAATCTTTATTTGTTTGTAGTTTTCTTAAACCTTTCTGTGGCTCAATTTATTTATTTATTTATTTATTTATTTATTTCTATGTACTCACTACTTTATCACTTTAGAATTTCATGATTAATGGAATCAGTAAGACTTTGATGATGACATTTATTCTTATATATATATATATAAAGATATTTATAGTTGACTAGTGCTCTTGTTCTCTTAATAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTCTTCTATGAATTTGGATGCAAGATTGCACCTCTGTGAGTATCCTGAGATCCAACTCTTCAGGATTTATCATGAATCATAATTCTCTTATGAGAAGAAAAATTTATATTGCTGCTTTGTCCATTAATTTGATGAAGTCATACTTATGTCCATTGAAATTGAATGTGTTTGTAAGTGCCCTTTCCTTTGAAATACATTCGTACTCTAATAAGCACGACTTGTTTTCACCTTTCCCAGAAGTAGCCTTCTGAAGACATGTCACATGACATTTAACAGATCCATTTTCAAACATAACAATTAGGTTATCTAGCCATAGGACTACTTGTTTACTGCCGTCTAAATGACTTAGAAATGATCTATTTAAACTTGTAAACTAAGCATGCCGGTTGGACATCCTACTAAGGACTAAGGATCTTGCATTTAGGCTTGATATTAAGCTGGCTAGCATGTTGTCATCTCAAGTTTTGCATCTCAATGAATATCAATCTCAATTTCATTCCATTGTAGATGTAGATTGATAAATATGCACAAAGATTAAACTATCTTGTAAAAAGTACTTGTTGCCTTGGAGTGCCTGTAGGATGTCTGTTTTGTTGCGGTGTGCTCTGCCAAATTGCTGTTGGGAAGATTTGTTAAGTGTACCCAAATGCACAAGAACACAGTAGATTGATTATACCTCTCGTTTTTCTTTCACATGTCATTTAGTTTTTTTTTAGTACAAAATGTTTTGTACGAGGATTTGAACCTCCAACCTCAAGAGGAGTGTAAGAAAATTAAAGTTGAGCTATACTCATGTTGGCTTAAAGAGGATTGTTCTAACTTCTCATCACAAACTTCATCGTCAGGGTTGGCGATAGAATGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGAGTGAGATATTTGTTAGATGTTTTGTCTGTCTGTTGTTTCCATATTTAATATTTAATGCTTCTCTTCAAATTCACATCAATATAATCCCTTTTGTGCAGTGTATGAAGCAGCTCAATCCTCTATGACAGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAG

mRNA sequence

ATGACAAGTTATTATGATATTGATGACATTCTAGCAGAGGAAGAGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTCTTCTATGAATTTGGATGCAAGATTGCACCTCTGGTTGGCGATAGAATGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGATGTATGAAGCAGCTCAATCCTCTATGACAGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAG

Coding sequence (CDS)

ATGACAAGTTATTATGATATTGATGACATTCTAGCAGAGGAAGAGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTCTTCTATGAATTTGGATGCAAGATTGCACCTCTGGTTGGCGATAGAATGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGATGTATGAAGCAGCTCAATCCTCTATGACAGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAG

Protein sequence

MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRKRKSSE

Homology

[Close]

BLAST of ClCG11G006160 vs. NCBI nr
Match: XP_038885801.1 (DNA replication complex GINS protein PSF3-like [Benincasa hispida] >XP_038885802.1 DNA replication complex GINS protein PSF3-like [Benincasa hispida])

HSP 1 Score: 354.8 bits (909), Expect = 4.6e-94
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYD+DDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 5   MTSYYDLDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 64

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDR IGSWLLSTFKSR
Sbjct: 65  AVMALPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 124

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAHTAVFAASSKYL LLS EETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK
Sbjct: 125 YKEVLTKAHTAVFAASSKYLTLLSNEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 184

Query: 181 RKSSE 186
           RKSSE
Sbjct: 185 RKSSE 189

[Close]

BLAST of ClCG11G006160 vs. NCBI nr
Match: XP_008441464.1 (PREDICTED: DNA replication complex GINS protein PSF3-like [Cucumis melo] >XP_008441465.1 PREDICTED: DNA replication complex GINS protein PSF3-like [Cucumis melo])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDR IGSWLLSTFKSR
Sbjct: 61  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 121 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 180

Query: 181 RKSSE 186
           RKS+E
Sbjct: 181 RKSTE 185

[Close]

BLAST of ClCG11G006160 vs. NCBI nr
Match: KAA0055042.1 (DNA replication complex GINS protein PSF3-like [Cucumis melo var. makuwa] >TYK24435.1 DNA replication complex GINS protein PSF3-like [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 23  MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 82

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDR IGSWLLSTFKSR
Sbjct: 83  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 142

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 143 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 202

Query: 181 RKSSE 186
           RKS+E
Sbjct: 203 RKSTE 207

[Close]

BLAST of ClCG11G006160 vs. NCBI nr
Match: XP_004138422.1 (DNA replication complex GINS protein PSF3 isoform X1 [Cucumis sativus] >KGN45788.1 hypothetical protein Csa_005301 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 1.5e-92
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 5   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 64

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDR IGSWLLST KSR
Sbjct: 65  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTLKSR 124

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 125 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 184

Query: 181 RKSSE 186
           RKS+E
Sbjct: 185 RKSTE 189

[Close]

BLAST of ClCG11G006160 vs. NCBI nr
Match: XP_022134062.1 (DNA replication complex GINS protein PSF3-like [Momordica charantia])

HSP 1 Score: 344.4 bits (882), Expect = 6.3e-91
Identity = 172/185 (92.97%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MT+YYDIDDILAEEELVSVVFQK VNGVGIDPSSETDSVESGSKVELPFWL QELHLRQV
Sbjct: 1   MTNYYDIDDILAEEELVSVVFQKGVNGVGIDPSSETDSVESGSKVELPFWLGQELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
             MGLP+CFNQRTRLEIQADAAFVDLRSRCP+FYEFGCKIAPLVGDR IGSWLLSTFK R
Sbjct: 61  VAMGLPACFNQRTRLEIQADAAFVDLRSRCPYFYEFGCKIAPLVGDRTIGSWLLSTFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+A+FAASSKYLALLSKEET+MYEAAQSSMTAFKKWRMGGPRFQKASFL RK
Sbjct: 121 YKEVLTKAHSAIFAASSKYLALLSKEETEMYEAAQSSMTAFKKWRMGGPRFQKASFLGRK 180

Query: 181 RKSSE 186
           RKSSE
Sbjct: 181 RKSSE 185

[Close]

BLAST of ClCG11G006160 vs. ExPASy Swiss-Prot
Match: Q0UPV4 (DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=PSF3 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.8e-17
Identity = 53/172 (30.81%), Postives = 85/172 (49.42%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQ- 60
           M+SYY +D IL + + V   F+  V G+G    + +  ++ GSKVELP WL + L L Q 
Sbjct: 1   MSSYYSVDAILTDAQKVPCTFELTVPGLGFLEGNMSGDMKQGSKVELPLWLGEMLALSQS 60

Query: 61  -----VAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLL 120
                +  +  PS  + R    ++AD   VDLR+  P FY+ G +I  L  +  +   L 
Sbjct: 61  LNTSSLVTLDPPSALSPRVLNALKADPRTVDLRALAPHFYDLGARILELFEEEKMIEVLS 120

Query: 121 STFKSRYKEVLTKAHT--AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKW 165
            TFK+R   +  +AH         + ++  L + E +++ AA  S  A + W
Sbjct: 121 DTFKARAAVIADQAHNPRGALGEGADFMRGLDENERQLFRAAHDSAKAARTW 172

[Close]

BLAST of ClCG11G006160 vs. ExPASy Swiss-Prot
Match: Q4WQ54 (DNA replication complex GINS protein psf3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=psf3 PE=3 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-15
Identity = 47/170 (27.65%), Postives = 83/170 (48.82%), Query Frame = 0


Query: 3   SYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHL----- 62
           SYYD+D IL + + +   F+  V G+GI   +  + +++G++++LP WL   L +     
Sbjct: 2   SYYDVDSILTDSQKLPCTFELEVPGLGILEGNPGEDIKAGTRIDLPLWLGVMLSIGARLG 61

Query: 63  -RQVAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLST 122
             ++  + LPS  + R    ++AD   VDLRS  P FY    ++  L  +  +   L++T
Sbjct: 62  TSRLVTLDLPSALSDRVVNALKADPRTVDLRSLAPHFYSLSERVLDLFEEEEMVDVLINT 121

Query: 123 FKSRYKEVLTKAHT--AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKW 165
           FK R  E+   AH         + +L  L + E +++  A  S    + W
Sbjct: 122 FKKRAAEIADHAHNPKGALGEGADFLRGLDETERQLFRVAHDSARETRIW 171

[Close]

BLAST of ClCG11G006160 vs. ExPASy Swiss-Prot
Match: Q7ZT01 (DNA replication complex GINS protein PSF3 OS=Xenopus laevis OX=8355 GN=gins3 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-14
Identity = 55/191 (28.80%), Postives = 94/191 (49.21%), Query Frame = 0


Query: 3   SYYDIDDILAEEELVSVVFQKAVNGVG-IDPSSETDSVESGSKVELPFWLAQELH--LRQ 62
           ++  ++D+L  +E +    +     +G +D   ++DS+  GSK+ELP WLA+ L+   R+
Sbjct: 17  NFLSLEDLLMSQEKLPCCIESGFPRLGFLDKGGDSDSIPEGSKMELPLWLAKGLYDNKRR 76

Query: 63  VAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVG--DRMIGSWLLSTF 122
           V  + LP  + +  R    ADA  VDL    P +Y FG ++       +  I   +L TF
Sbjct: 77  VLSVELPKIYREGWRTVFSADANVVDLHKMGPHYYGFGSQLLNFDSPENPEIAKTILQTF 136

Query: 123 KSRYKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFL 182
             R++ ++  +  A    +S  +A L + E  ++ A Q  + AF+ W  G      AS L
Sbjct: 137 VGRFRRIMDSSQNAYNEDTSGLVARLDELERSLFRAGQRGLNAFQSWERGKAAQITASNL 196

Query: 183 ---SRKRKSSE 186
               +KRK +E
Sbjct: 197 VQNYKKRKFNE 207

[Close]

BLAST of ClCG11G006160 vs. ExPASy Swiss-Prot
Match: Q54EH6 (Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium discoideum OX=44689 GN=gins3 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 43/163 (26.38%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 3   SYYDIDDILAEEELVSV-VFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVA 62
           SY+DI+DILAEE+ ++   F  A N   ++  S    ++ GSKV+LP+W+A  L      
Sbjct: 2   SYFDINDILAEEQKITCNFFYDAYNLGQLEEGSRDPDMKKGSKVDLPYWMALALAKSNFV 61

Query: 63  VMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSRY 122
            + +P  +    + ++ AD   + +R   P++ + G +++   GDR +   L   F+ R+
Sbjct: 62  SVIMPPEYQDEYKNKLIADPNVISMR-LFPYYDKIGVQLSDFFGDRKLKLLLFRVFRERF 121

Query: 123 KEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKW 165
             + +++        SK L  L+ +E +++     S   + KW
Sbjct: 122 LNIYSQSINLKETDISKILGNLTYQEREVFSNGYKSSNDYDKW 163

[Close]

BLAST of ClCG11G006160 vs. ExPASy Swiss-Prot
Match: Q9UTC3 (DNA replication complex GINS protein psf3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=psf3 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 4   YYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVM 63
           YYDID IL+E + V      ++ G+G     E   V +GSKVELPFWLA+ L +     +
Sbjct: 3   YYDIDSILSENQKVPCTSTVSIPGLG----HEGRMVPTGSKVELPFWLAEVLAINSFVSI 62

Query: 64  GLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 121
            +P+ F+   R  ++A+   V +R     +Y F  K+  L+ D  +    L+T +SR
Sbjct: 63  HMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLHLISDDSLVQISLNTLRSR 115

[Close]

BLAST of ClCG11G006160 vs. ExPASy TrEMBL
Match: A0A1S3B3H3 (DNA replication complex GINS protein PSF3-like OS=Cucumis melo OX=3656 GN=LOC103485572 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDR IGSWLLSTFKSR
Sbjct: 61  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 121 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 180

Query: 181 RKSSE 186
           RKS+E
Sbjct: 181 RKSTE 185

[Close]

BLAST of ClCG11G006160 vs. ExPASy TrEMBL
Match: A0A5A7UGU7 (DNA replication complex GINS protein PSF3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002360 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 23  MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 82

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDR IGSWLLSTFKSR
Sbjct: 83  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTFKSR 142

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 143 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 202

Query: 181 RKSSE 186
           RKS+E
Sbjct: 203 RKSTE 207

[Close]

BLAST of ClCG11G006160 vs. ExPASy TrEMBL
Match: A0A0A0K8J6 (Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G011640 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.2e-93
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV
Sbjct: 5   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 64

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
           AVM LPSCFNQRTRLEIQADAAFVDLRSRC FFYEFGCKIAPLVGDR IGSWLLST KSR
Sbjct: 65  AVMALPSCFNQRTRLEIQADAAFVDLRSRCQFFYEFGCKIAPLVGDRTIGSWLLSTLKSR 124

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+AVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQ+ASFLSRK
Sbjct: 125 YKEVLTKAHSAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQRASFLSRK 184

Query: 181 RKSSE 186
           RKS+E
Sbjct: 185 RKSTE 189

[Close]

BLAST of ClCG11G006160 vs. ExPASy TrEMBL
Match: A0A6J1BYI2 (DNA replication complex GINS protein PSF3-like OS=Momordica charantia OX=3673 GN=LOC111006426 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.0e-91
Identity = 172/185 (92.97%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MT+YYDIDDILAEEELVSVVFQK VNGVGIDPSSETDSVESGSKVELPFWL QELHLRQV
Sbjct: 1   MTNYYDIDDILAEEELVSVVFQKGVNGVGIDPSSETDSVESGSKVELPFWLGQELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
             MGLP+CFNQRTRLEIQADAAFVDLRSRCP+FYEFGCKIAPLVGDR IGSWLLSTFK R
Sbjct: 61  VAMGLPACFNQRTRLEIQADAAFVDLRSRCPYFYEFGCKIAPLVGDRTIGSWLLSTFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAH+A+FAASSKYLALLSKEET+MYEAAQSSMTAFKKWRMGGPRFQKASFL RK
Sbjct: 121 YKEVLTKAHSAIFAASSKYLALLSKEETEMYEAAQSSMTAFKKWRMGGPRFQKASFLGRK 180

Query: 181 RKSSE 186
           RKSSE
Sbjct: 181 RKSSE 185

[Close]

BLAST of ClCG11G006160 vs. ExPASy TrEMBL
Match: A0A6J1HEE0 (DNA replication complex GINS protein PSF3-like OS=Cucurbita moschata OX=3662 GN=LOC111462725 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.6e-90
Identity = 173/185 (93.51%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           MT+YYDIDDILAEEELVSV+FQKAVNGV IDPSSETDSVESGSKVELPFWLA+ELHLRQV
Sbjct: 1   MTNYYDIDDILAEEELVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQV 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
           AVMGLP+CFNQRTRLEIQADAAFVDLRSR  +FYEFGCKIAPLVGDR IGSWLLSTFKSR
Sbjct: 61  AVMGLPACFNQRTRLEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKEVLTKAHTAVFAASSKYL LLSKEETKMYEAAQSSMTAFKKWR+GGPRFQKASFL RK
Sbjct: 121 YKEVLTKAHTAVFAASSKYLTLLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRK 180

Query: 181 RKSSE 186
           RKSSE
Sbjct: 181 RKSSE 185

[Close]

BLAST of ClCG11G006160 vs. TAIR 10
Match: AT1G19080.1 (GINS complex protein )

HSP 1 Score: 258.5 bits (659), Expect = 4.2e-69
Identity = 126/184 (68.48%), Postives = 144/184 (78.26%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           M  Y+DIDDIL EEE V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ 
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
             + LP CF+Q+TRLE+QADAA+VDLRSRCP+FYEFGCKI PLV DR +G  L + FK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKE LTK +TA    +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS L RK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKSS 185
           RK S
Sbjct: 181 RKDS 184

[Close]

BLAST of ClCG11G006160 vs. TAIR 10
Match: AT1G19080.2 (GINS complex protein )

HSP 1 Score: 258.5 bits (659), Expect = 4.2e-69
Identity = 126/184 (68.48%), Postives = 144/184 (78.26%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           M  Y+DIDDIL EEE V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ 
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
             + LP CF+Q+TRLE+QADAA+VDLRSRCP+FYEFGCKI PLV DR +G  L + FK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKE LTK +TA    +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS L RK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKSS 185
           RK S
Sbjct: 181 RKDS 184

[Close]

BLAST of ClCG11G006160 vs. TAIR 10
Match: AT3G55490.1 (GINS complex protein )

HSP 1 Score: 258.5 bits (659), Expect = 4.2e-69
Identity = 126/184 (68.48%), Postives = 144/184 (78.26%), Query Frame = 0


Query: 1   MTSYYDIDDILAEEELVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQV 60
           M  Y+DIDDIL EEE V V+F K  NGV IDPS+ET+  E GSKVELPFWLA ELHLRQ 
Sbjct: 1   MAKYFDIDDILIEEEFVPVLFHKTANGVTIDPSAETNCAEQGSKVELPFWLAHELHLRQA 60

Query: 61  AVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSR 120
             + LP CF+Q+TRLE+QADAA+VDLRSRCP+FYEFGCKI PLV DR +G  L + FK R
Sbjct: 61  VTINLPPCFDQKTRLEVQADAAYVDLRSRCPYFYEFGCKIEPLVTDRTLGILLSTAFKIR 120

Query: 121 YKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRK 180
           YKE LTK +TA    +SKYL+ L+KEET +YEAA  SMTAFKKWR GGPRFQ+AS L RK
Sbjct: 121 YKEALTKVYTAAHITASKYLSFLTKEETNLYEAAHLSMTAFKKWRTGGPRFQRASILGRK 180

Query: 181 RKSS 185
           RK S
Sbjct: 181 RKDS 184

The following BLAST results are available for this feature:

BLAST of ClCG11G006160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885801.1	4.6e-94	97.30	DNA replication complex GINS protein PSF3-like [Benincasa hispida] >XP_038885802...	[more]
XP_008441464.1	3.0e-93	96.76	PREDICTED: DNA replication complex GINS protein PSF3-like [Cucumis melo] >XP_008...	[more]
KAA0055042.1	3.0e-93	96.76	DNA replication complex GINS protein PSF3-like [Cucumis melo var. makuwa] >TYK24...	[more]
XP_004138422.1	1.5e-92	96.22	DNA replication complex GINS protein PSF3 isoform X1 [Cucumis sativus] >KGN45788...	[more]
XP_022134062.1	6.3e-91	92.97	DNA replication complex GINS protein PSF3-like [Momordica charantia]	[more]

BLAST of ClCG11G006160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0UPV4	4.8e-17	30.81	DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum (strain SN15 ...	[more]
Q4WQ54	3.4e-15	27.65	DNA replication complex GINS protein psf3 OS=Neosartorya fumigata (strain ATCC M...	[more]
Q7ZT01	2.2e-14	28.80	DNA replication complex GINS protein PSF3 OS=Xenopus laevis OX=8355 GN=gins3 PE=...	[more]
Q54EH6	1.0e-11	26.38	Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium discoideum O...	[more]
Q9UTC3	3.9e-11	34.19	DNA replication complex GINS protein psf3 OS=Schizosaccharomyces pombe (strain 9...	[more]

BLAST of ClCG11G006160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3H3	1.5e-93	96.76	DNA replication complex GINS protein PSF3-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7UGU7	1.5e-93	96.76	DNA replication complex GINS protein PSF3-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0K8J6	7.2e-93	96.22	Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G011640 PE=3 S...	[more]
A0A6J1BYI2	3.0e-91	92.97	DNA replication complex GINS protein PSF3-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1HEE0	2.6e-90	93.51	DNA replication complex GINS protein PSF3-like OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of ClCG11G006160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19080.1	4.2e-69	68.48	GINS complex protein	[more]
AT1G19080.2	4.2e-69	68.48	GINS complex protein	[more]
AT3G55490.1	4.2e-69	68.48	GINS complex protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038437	GINS complex, subunit Psf3 superfamily	GENE3D	1.20.58.2050		coord: 1..167 e-value: 4.8E-51 score: 174.9
IPR021151	GINS subunit, domain A	PFAM	PF05916	Sld5	coord: 45..148 e-value: 1.2E-7 score: 32.2
IPR010492	GINS complex, subunit Psf3	PANTHER	PTHR22768	UNCHARACTERIZED	coord: 1..184
None	No IPR available	CDD	cd11713	GINS_A_psf3	coord: 65..167 e-value: 7.21816E-30 score: 103.885
None	No IPR available	SUPERFAMILY	160059	PriA/YqbF domain	coord: 1..66
IPR036224	GINS, helical bundle-like domain superfamily	SUPERFAMILY	158573	GINS helical bundle-like	coord: 65..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G006160.2	ClCG11G006160.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902975	mitotic DNA replication initiation
cellular_component	GO:0000811	GINS complex