ClCG10G015940 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G015940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein SRC1
Location	CG_Chr10: 30499819 .. 30500139 (+)
RNA-Seq Expression	ClCG10G015940
Synteny	ClCG10G015940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGATTCATCGAGAAAATTGGTGAGAAGCTCCACATTGGAGGAGACCACAACAAAGGGGAGCATCACGATGCTCATAAAGGCGACCATCACGATGCCCACAAAGGAGAGCATCACGATGAACACAAGAAGCACGGCAAATCGGAGGAGCACCATGGAGAAGGCCACAAGGAAGGGCTGATTGACAAGATCAAGGACAAGATCCATGGAGATCATGATGACAAAGGGGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGATGAGCACCACCACCACGACGGCGGCCATAGCAGCAGCGATAGCGACAGCGACTGA

mRNA sequence

ATGTCTGGATTCATCGAGAAAATTGGTGAGAAGCTCCACATTGGAGGAGACCACAACAAAGGGGAGCATCACGATGCTCATAAAGGCGACCATCACGATGCCCACAAAGGAGAGCATCACGATGAACACAAGAAGCACGGCAAATCGGAGGAGCACCATGGAGAAGGCCACAAGGAAGGGCTGATTGACAAGATCAAGGACAAGATCCATGGAGATCATGATGACAAAGGGGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGATGAGCACCACCACCACGACGGCGGCCATAGCAGCAGCGATAGCGACAGCGACTGA

Coding sequence (CDS)

ATGTCTGGATTCATCGAGAAAATTGGTGAGAAGCTCCACATTGGAGGAGACCACAACAAAGGGGAGCATCACGATGCTCATAAAGGCGACCATCACGATGCCCACAAAGGAGAGCATCACGATGAACACAAGAAGCACGGCAAATCGGAGGAGCACCATGGAGAAGGCCACAAGGAAGGGCTGATTGACAAGATCAAGGACAAGATCCATGGAGATCATGATGACAAAGGGGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGATGAGCACCACCACCACGACGGCGGCCATAGCAGCAGCGATAGCGACAGCGACTGA

Protein sequence

MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEGLIDKIKDKIHGDHDDKGEKKKKKEKKKKDEHHHHDGGHSSSDSDSD

Homology

[Close]

BLAST of ClCG10G015940 vs. NCBI nr
Match: XP_038903205.1 (protein SRC1 [Benincasa hispida])

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-37
Identity = 94/108 (87.04%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           MSGFIEKIGEKLHIGGDHNKGE        HHD HKGEHHDEHKKHGKSEEHHGEGHKEG
Sbjct: 1   MSGFIEKIGEKLHIGGDHNKGE--------HHDGHKGEHHDEHKKHGKSEEHHGEGHKEG 60

Query: 61  LIDKIKDKIHGDHDDKGEKKK--KKEKKKKDEHHHHDGGHSSSDSDSD 107
           LI+KIKDKIHGDHD+KGEKKK  KKEKKKK EHHHHDGGHSSSDSDSD
Sbjct: 61  LIEKIKDKIHGDHDEKGEKKKKEKKEKKKKGEHHHHDGGHSSSDSDSD 100

[Close]

BLAST of ClCG10G015940 vs. NCBI nr
Match: XP_008443295.1 (PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucumis melo var. makuwa] >TYK25548.1 zinc transporter ZIP6 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-28
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           MSGFIEKIGEKLHIGGD         HKG+HHDAHKGEHHDEHKKH K EEHHGEGHKEG
Sbjct: 1   MSGFIEKIGEKLHIGGD---------HKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEG 60

Query: 61  LIDKIKDKIH---GDHDDKGEKKKKKEKKKKDEHHHHDGGHSSSDSDSD 107
           +I+KIKDKIH   G HD+KGEKKKK++KKK +  H H GG SSSDSDSD
Sbjct: 61  IIEKIKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of ClCG10G015940 vs. NCBI nr
Match: XP_011652200.1 (protein SRC1 [Cucumis sativus] >KAE8651191.1 hypothetical protein Csa_001440 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEG-HKE 60
           MSGFIEKIGEKLHIGGDH KGEHHDAHKG+    HKGEHHDEHKKH   EEHHGEG HKE
Sbjct: 1   MSGFIEKIGEKLHIGGDH-KGEHHDAHKGE----HKGEHHDEHKKH---EEHHGEGAHKE 60

Query: 61  GLIDKIKDKIHG--DHDDKGEKKKKKEKKKKDEHHHHDGGHSSSDSDSD 107
           G++DKIKDKIHG   H++KGEKKKK++KKK +  H H+GG SSSDSDSD
Sbjct: 61  GIMDKIKDKIHGGDHHEEKGEKKKKEKKKKGEHGHKHEGGDSSSDSDSD 101

[Close]

BLAST of ClCG10G015940 vs. NCBI nr
Match: KAG6596975.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-24
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           M+G +EKIGEKLHIGGDH KGE    HKG+HH+  K EH  E KKHG+  EHHGEGHKEG
Sbjct: 1   MAGIMEKIGEKLHIGGDH-KGE----HKGEHHEKDKHEHEHE-KKHGEKSEHHGEGHKEG 60

Query: 61  LIDKIKDKIHGD-HDDKGEKKKKKEKKKKDEHHHHDGGH-SSSDSDSD 107
           L++KIKDKIHGD HDDKGEKKKKKEKKKK E  HH+GGH SSSDSDSD
Sbjct: 61  LMEKIKDKIHGDHHDDKGEKKKKKEKKKKGE--HHEGGHSSSSDSDSD 100

[Close]

BLAST of ClCG10G015940 vs. NCBI nr
Match: XP_022942109.1 (protein SRC1-like [Cucurbita moschata])

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-23
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           M+G +EKIGEKLHIGGDH KGE    HKG+HH+  K EH    KKHG+  EHHGEGHKEG
Sbjct: 1   MAGIMEKIGEKLHIGGDH-KGE----HKGEHHEKDKHEH---EKKHGEKSEHHGEGHKEG 60

Query: 61  LIDKIKDKIHGD-HDDKGEKKKKKEKKKKDEHHHHDGGH-SSSDSDSD 107
           L++KIKDKIHGD HD+KGEKKKKKEKKKK E  HH+GGH SSSDSDSD
Sbjct: 61  LMEKIKDKIHGDHHDEKGEKKKKKEKKKKGE--HHEGGHSSSSDSDSD 98

[Close]

BLAST of ClCG10G015940 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 70/104 (67.31%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           MSG I KI E LH+GG H K EH   H G+H   HKGEHH EHK   K E+HHGE HKEG
Sbjct: 1   MSGIIHKIEETLHVGG-HKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGE-HKEG 60

Query: 61  LIDKIKDKIHGDHDDKGEKKKKKEKKKKDEHHHHDGGHSSSDSD 105
           L+DKIKDKIHGD  DKGEKKKKK+KKKK+  H H G  SSSDSD
Sbjct: 61  LVDKIKDKIHGDGHDKGEKKKKKDKKKKEHGHDHHGHSSSSDSD 102

[Close]

BLAST of ClCG10G015940 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-11
Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           M+G I KIG+ LHIGG + +GEH              +  +EHKKH   +EH    HKEG
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEH--------------KKEEEHKKH--VDEHKSGEHKEG 60

Query: 61  LIDKIKDKIHG----DHDDK-----GEKKKKKEKKKKDEHHHHDGGHSSSDSDSD 107
           ++DKIKDKIHG     HD +     GEKKKKK+KK+K    HHD GH SS SDSD
Sbjct: 61  IVDKIKDKIHGGEGKSHDGEGKSHDGEKKKKKDKKEK---KHHDDGHHSSSSDSD 96

[Close]

BLAST of ClCG10G015940 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           MSGFIEKIGEKLHIGGD         HKG+HHDAHKGEHHDEHKKH K EEHHGEGHKEG
Sbjct: 1   MSGFIEKIGEKLHIGGD---------HKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEG 60

Query: 61  LIDKIKDKIH---GDHDDKGEKKKKKEKKKKDEHHHHDGGHSSSDSDSD 107
           +I+KIKDKIH   G HD+KGEKKKK++KKK +  H H GG SSSDSDSD
Sbjct: 61  IIEKIKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of ClCG10G015940 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           MSGFIEKIGEKLHIGGD         HKG+HHDAHKGEHHDEHKKH K EEHHGEGHKEG
Sbjct: 1   MSGFIEKIGEKLHIGGD---------HKGEHHDAHKGEHHDEHKKHEKKEEHHGEGHKEG 60

Query: 61  LIDKIKDKIH---GDHDDKGEKKKKKEKKKKDEHHHHDGGHSSSDSDSD 107
           +I+KIKDKIH   G HD+KGEKKKK++KKK +  H H GG SSSDSDSD
Sbjct: 61  IIEKIKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of ClCG10G015940 vs. ExPASy TrEMBL
Match: A0A6J1FQD3 (protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.7e-23
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           M+G +EKIGEKLHIGGDH KGE    HKG+HH+  K EH    KKHG+  EHHGEGHKEG
Sbjct: 1   MAGIMEKIGEKLHIGGDH-KGE----HKGEHHEKDKHEH---EKKHGEKSEHHGEGHKEG 60

Query: 61  LIDKIKDKIHGD-HDDKGEKKKKKEKKKKDEHHHHDGGH-SSSDSDSD 107
           L++KIKDKIHGD HD+KGEKKKKKEKKKK E  HH+GGH SSSDSDSD
Sbjct: 61  LMEKIKDKIHGDHHDEKGEKKKKKEKKKKGE--HHEGGHSSSSDSDSD 98

[Close]

BLAST of ClCG10G015940 vs. ExPASy TrEMBL
Match: A0A6J1J3L9 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111482367 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.2e-21
Identity = 75/108 (69.44%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHH--DAHKGEHHDEHKKHGKSEEHHGEGHK 60
           MSGFIEKIGEKLHI G+H    HH+AHKG+HH  DAHKGEHH           H GE HK
Sbjct: 1   MSGFIEKIGEKLHI-GEH----HHEAHKGEHHHKDAHKGEHH--------QHAHKGE-HK 60

Query: 61  EGLIDKIKDKIHGD--HDDKGEKKKKKEKKKKDEHHHHDGGHSSSDSD 105
            GL+ KIKDKIHGD  H DKG+KKKKK+KKKKD  HHHDGGHSSSDSD
Sbjct: 61  VGLVHKIKDKIHGDHHHHDKGDKKKKKDKKKKDHDHHHDGGHSSSDSD 94

[Close]

BLAST of ClCG10G015940 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 74/109 (67.89%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           MSG +EKIGEKLHIGGDH KGE    HKGDHH+  K EH    KKHG+  EHHGEGHKEG
Sbjct: 1   MSGIMEKIGEKLHIGGDH-KGE----HKGDHHEKDKHEH---EKKHGEKSEHHGEGHKEG 60

Query: 61  LIDKIKDKIHG---DHDDKGEKKKKKEKKKKDEHHHHDGGHSSSDSDSD 107
           L++KIKDKIHG    HD+KGEKKKKK++KKK   H   G  SSSDSDSD
Sbjct: 61  LMEKIKDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of ClCG10G015940 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-12
Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHNKGEHHDAHKGDHHDAHKGEHHDEHKKHGKSEEHHGEGHKEG 60
           M+G I KIG+ LHIGG + +GEH              +  +EHKKH   +EH    HKEG
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEH--------------KKEEEHKKH--VDEHKSGEHKEG 60

Query: 61  LIDKIKDKIHG----DHDDK-----GEKKKKKEKKKKDEHHHHDGGHSSSDSDSD 107
           ++DKIKDKIHG     HD +     GEKKKKK+KK+K    HHD GH SS SDSD
Sbjct: 61  IVDKIKDKIHGGEGKSHDGEGKSHDGEKKKKKDKKEK---KHHDDGHHSSSSDSD 96

The following BLAST results are available for this feature:

BLAST of ClCG10G015940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903205.1	2.3e-37	87.04	protein SRC1 [Benincasa hispida]	[more]
XP_008443295.1	4.3e-28	74.31	PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucu...	[more]
XP_011652200.1	1.4e-26	76.15	protein SRC1 [Cucumis sativus] >KAE8651191.1 hypothetical protein Csa_001440 [Cu...	[more]
KAG6596975.1	6.5e-24	75.00	Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022942109.1	5.5e-23	73.15	protein SRC1-like [Cucurbita moschata]	[more]

BLAST of ClCG10G015940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	1.3e-22	67.31	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]
Q9SLJ2	2.9e-11	49.57	Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1	[more]

BLAST of ClCG10G015940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UF86	2.1e-28	74.31	Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3B8E4	2.1e-28	74.31	protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1	[more]
A0A6J1FQD3	2.7e-23	73.15	protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1	[more]
A0A6J1J3L9	7.2e-21	69.44	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111482367 PE=4 SV=1	[more]
A0A6J1I7B7	1.2e-20	67.89	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1	[more]

BLAST of ClCG10G015940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54410.1	2.1e-12	49.57	dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..79
None	No IPR available	PANTHER	PTHR34941:SF4	PROTEIN SRC1	coord: 1..106
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G015940.1	ClCG10G015940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding