Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTTTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCATCTCCGGCGACCTCTCCGGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGCGTTCGGATCTGTGGCCGTTGTGCTATACGCCGTCCTTTTGATGATCTGAGAGCAGTCGGATTTGATTCGTTCTCCGTGTCTGTCTATCTGAGTGATTTATTGTAGCATCTTACTGAGTACATTTTTTCTTGATTTTGTATCTGTTTTTTTTTTCTCCTCTTTTTTTTCACAGTTATTATCATTATTCTTCATTATCTGA
mRNA sequence
ATGGCGATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTTTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCATCTCCGGCGACCTCTCCGGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGCGTTCGGATCTGTGGCCGTTGTGCTATACGCCTTATTATCATTATTCTTCATTATCTGA
Coding sequence (CDS)
ATGGCGATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTTTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCATCTCCGGCGACCTCTCCGGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGCGTTCGGATCTGTGGCCGTTGTGCTATACGCCTTATTATCATTATTCTTCATTATCTGA
Protein sequence
MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVLYALLSLFFII
Homology
BLAST of ClCG10G009470 vs. NCBI nr
Match:
XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])
HSP 1 Score: 161.0 bits (406), Expect = 6.9e-36
Identity = 111/126 (88.10%), Postives = 115/126 (91.27%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIRS AM+LVALLIGSAIAQSP ASP SPSKSPSKAPSASPSVKSPKSSPAAAPTPS
Sbjct: 1 MAIRSFVAMILVALLIGSAIAQSPGASP--SPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SLKSPPSPPSTSP+TSPSP TSPATSPS ISSPPADAPAPSGNGAASI FS FGSVAVVL
Sbjct: 61 SLKSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVL 120
Query: 121 YALLSL 127
Y ++ L
Sbjct: 121 YTVVLL 124
BLAST of ClCG10G009470 vs. NCBI nr
Match:
XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])
HSP 1 Score: 134.4 bits (337), Expect = 6.9e-28
Identity = 95/124 (76.61%), Postives = 104/124 (83.87%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIR M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SLKSPPSPP+ SPS SPSP SPSSISSPPADAPAPSGN AASI FS FGSVA VL
Sbjct: 61 SLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 118
Query: 121 YALL 125
YA++
Sbjct: 121 YAIV 118
BLAST of ClCG10G009470 vs. NCBI nr
Match:
KAA0061155.1 (classical arabinogalactan protein 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 134.0 bits (336), Expect = 9.1e-28
Identity = 96/124 (77.42%), Postives = 103/124 (83.06%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIRSL AM+LV+ LI SA AQ SP++SPSKAPS SPSVKSPKSSPA APTPS
Sbjct: 1 MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPALAPTPS 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SLKSPPSPPSTSPSTSPS + SPATSPSSISSPPADAPAPSGNGAASI FS GS AV L
Sbjct: 61 SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 116
Query: 121 YALL 125
YA++
Sbjct: 121 YAVV 116
BLAST of ClCG10G009470 vs. NCBI nr
Match:
KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 96/130 (73.85%), Postives = 107/130 (82.31%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIR M++VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SLKSPPSPP+ SPS SPSP SPSSISSPPADAPAPSGN AASI FS FGSVA VL
Sbjct: 61 SLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 120
Query: 121 YALLSLFFII 131
YA+ + I+
Sbjct: 121 YAIFGMDSIL 124
BLAST of ClCG10G009470 vs. NCBI nr
Match:
XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 131.7 bits (330), Expect = 4.5e-27
Identity = 93/124 (75.00%), Postives = 105/124 (84.68%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIR M++VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SL+SPPSPP+ SPS SP SP+ SPSSISSPPADAPAPSGN AASI S FGSVA VL
Sbjct: 61 SLQSPPSPPAASPSLSP----SPSPSPSSISSPPADAPAPSGNAAASISLSMFGSVAAVL 120
Query: 121 YALL 125
YA++
Sbjct: 121 YAIV 120
BLAST of ClCG10G009470 vs. ExPASy Swiss-Prot
Match:
Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)
HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 68/127 (53.54%), Postives = 81/127 (63.78%), Query Frame = 0
Query: 4 RSLAAMLLVALLIGSAIAQSPAASPS------FSPSKSPSK--APSASPSVKSPKSSPAA 63
+SL +LL ALLI SA+AQSPA +PS SP+ SP K AP+ +P V SP SPAA
Sbjct: 5 KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64
Query: 64 APTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGS 123
A TP S SPPSPP T A SPA SPS+IS P +AP P+ GA S F++FGS
Sbjct: 65 ALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGS 124
BLAST of ClCG10G009470 vs. ExPASy TrEMBL
Match:
A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 3.4e-28
Identity = 95/124 (76.61%), Postives = 104/124 (83.87%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIR M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SLKSPPSPP+ SPS SPSP SPSSISSPPADAPAPSGN AASI FS FGSVA VL
Sbjct: 61 SLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 118
Query: 121 YALL 125
YA++
Sbjct: 121 YAIV 118
BLAST of ClCG10G009470 vs. ExPASy TrEMBL
Match:
A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 4.4e-28
Identity = 96/124 (77.42%), Postives = 103/124 (83.06%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIRSL AM+LV+ LI SA AQ SP++SPSKAPS SPSVKSPKSSPA APTPS
Sbjct: 1 MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPALAPTPS 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SLKSPPSPPSTSPSTSPS + SPATSPSSISSPPADAPAPSGNGAASI FS GS AV L
Sbjct: 61 SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 116
Query: 121 YALL 125
YA++
Sbjct: 121 YAVV 116
BLAST of ClCG10G009470 vs. ExPASy TrEMBL
Match:
A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 94/124 (75.81%), Postives = 103/124 (83.06%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAI SL A++ V+ I SA AQSPAASPS SP+KSPSKAPS + SPKSSPA APTPS
Sbjct: 1 MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHN----SPKSSPAVAPTPS 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SLKSPPSPPS+SPSTSPSPA+SPA SISSPPADAPAPSGNGAASI FS FGSVAV L
Sbjct: 61 SLKSPPSPPSSSPSTSPSPASSPA----SISSPPADAPAPSGNGAASITFSVFGSVAVAL 116
Query: 121 YALL 125
YA++
Sbjct: 121 YAVV 116
BLAST of ClCG10G009470 vs. ExPASy TrEMBL
Match:
A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)
HSP 1 Score: 127.9 bits (320), Expect = 3.1e-26
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MA R M+ VA+LI SAIAQSP+ASPS SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
SLKSPPSPP+ SPS SPSP SPSSISSPPADAPAPSGN AASI S FGSVA VL
Sbjct: 61 SLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAPSGNSAASISLSMFGSVAAVL 118
Query: 121 YALL 125
+A++
Sbjct: 121 FAIV 118
BLAST of ClCG10G009470 vs. ExPASy TrEMBL
Match:
A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 7.0e-26
Identity = 96/124 (77.42%), Postives = 101/124 (81.45%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSFSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIRS M+LVALLIGSAIAQSPAASPS SP KSPSKAPSASPSVKSPKSSP AAPTP+
Sbjct: 1 MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGSVAVVL 120
S SPSTSP SPA SPSSISSPPADAPAPSG+GAASI FS FGSVAVVL
Sbjct: 61 S----------SPSTSP----SPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVL 109
Query: 121 YALL 125
YA++
Sbjct: 121 YAVV 109
BLAST of ClCG10G009470 vs. TAIR 10
Match:
AT5G64310.1 (arabinogalactan protein 1 )
HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 68/127 (53.54%), Postives = 81/127 (63.78%), Query Frame = 0
Query: 4 RSLAAMLLVALLIGSAIAQSPAASPS------FSPSKSPSK--APSASPSVKSPKSSPAA 63
+SL +LL ALLI SA+AQSPA +PS SP+ SP K AP+ +P V SP SPAA
Sbjct: 5 KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64
Query: 64 APTPSSLKSPPSPPSTSPSTSPSPATSPATSPSSISSPPADAPAPSGNGAASIPFSAFGS 123
A TP S SPPSPP T A SPA SPS+IS P +AP P+ GA S F++FGS
Sbjct: 65 ALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGS 124
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038877310.1 | 6.9e-36 | 88.10 | classical arabinogalactan protein 1 [Benincasa hispida] | [more] |
| XP_022942993.1 | 6.9e-28 | 76.61 | classical arabinogalactan protein 1-like [Cucurbita moschata] | [more] |
| KAA0061155.1 | 9.1e-28 | 77.42 | classical arabinogalactan protein 1-like [Cucumis melo var. makuwa] | [more] |
| KAG7030900.1 | 1.2e-27 | 73.85 | hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_023542663.1 | 4.5e-27 | 75.00 | classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q8LCN5 | 4.0e-10 | 53.54 | Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1FW49 | 3.4e-28 | 76.61 | classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
| A0A5A7V5Q9 | 4.4e-28 | 77.42 | Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A0A0KZB8 | 1.1e-26 | 75.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1 | [more] |
| A0A6J1JSK4 | 3.1e-26 | 74.19 | classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
| A0A6J1E9Q3 | 7.0e-26 | 77.42 | classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G64310.1 | 2.8e-11 | 53.54 | arabinogalactan protein 1 | [more] |
