ClCG10G008630 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G008630
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
LocationCG_Chr10: 18868473 .. 18869130 (-)
RNA-Seq ExpressionClCG10G008630
SyntenyClCG10G008630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACAGAAGAAAATGATCAATATAGATGGAGTTCAAACGAAAAAACATGTTTGGACTAAAGAAAAGGATGGCAAGTTGATCGAGTGTCTAATGGAGTTAGCAAATCTAAGCCAATGGCATTGCGATAATGGAACATTTAGATTAGGCTATCTACAAAAAGTAAGCAAATGATGAAGTCAAAGTTGTCTGGATGTGAGGTGAAGGCTCAACCTCACATAGAATCAAGAGTGAAACTTTTGAAGAAGCAATATAATGCAATTGTAGAAATGTTGGGACGAAATTGTGGTGGTTTTGGTTGGAATGAAATAGAGATGTGTATTGATTGTTGCAAAGATGTTTTTGATGATTGGGTTAAGGTATGAAAATTATAATTTTTATTACATTCAATAATATACTTTTTGTAATTAATATAATATTACATAATTTTGTCAGAGAGTCACCCAATGCAAAAGGGTTACGTAACAAGTTGTTCTCATACTTAGATGAAATGGCAATAATATTTGGCAAAGACCGAGCTAATGGCCTTGGAGCTGAAGCATCAAAAGATATGGTTAAGAAAGTAGATATGGAGACAAACAATGGGACTTATTCAATGGTCACTGCTAACCGCTTTTGGTGTGGGATGACTTCACTGTGTCGCACCCACCTAAAGAGGTAA

mRNA sequence

ATACAGAAGAAAATGATCAATATAGATGGAGTTCAAACGAAAAAACATGTTTGGACTAAAGAAAAGGATGGCAAGTTGATCGAGTGTCTAATGGAAGAGTCACCCAATGCAAAAGGGTTACGTAACAAGTTGTTCTCATACTTAGATGAAATGGCAATAATATTTGGCAAAGACCGAGCTAATGGCCTTGGAGCTGAAGCATCAAAAGATATGGTTAAGAAAGTAGATATGGAGACAAACAATGGGACTTATTCAATGGTCACTGCTAACCGCTTTTGGTGTGGGATGACTTCACTGTGTCGCACCCACCTAAAGAGGTAA

Coding sequence (CDS)

ATACAGAAGAAAATGATCAATATAGATGGAGTTCAAACGAAAAAACATGTTTGGACTAAAGAAAAGGATGGCAAGTTGATCGAGTGTCTAATGGAAGAGTCACCCAATGCAAAAGGGTTACGTAACAAGTTGTTCTCATACTTAGATGAAATGGCAATAATATTTGGCAAAGACCGAGCTAATGGCCTTGGAGCTGAAGCATCAAAAGATATGGTTAAGAAAGTAGATATGGAGACAAACAATGGGACTTATTCAATGGTCACTGCTAACCGCTTTTGGTGTGGGATGACTTCACTGTGTCGCACCCACCTAAAGAGGTAA

Protein sequence

IQKKMINIDGVQTKKHVWTKEKDGKLIECLMEESPNAKGLRNKLFSYLDEMAIIFGKDRANGLGAEASKDMVKKVDMETNNGTYSMVTANRFWCGMTSLCRTHLKR
Homology
BLAST of ClCG10G008630 vs. NCBI nr
Match: XP_038886815.1 (uncharacterized protein LOC120077046 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 9.7e-12
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 31  MEESPNAKGLRNKLFSYLDEMAIIFGKDRANGLGAEASKDMVKKVDMETNNGTY 85
           ++  P+AKGLRNK F YLDEMA+IFGKDRANGL AE   DM +K+DMETNNG +
Sbjct: 65  VKSHPSAKGLRNKSFPYLDEMAMIFGKDRANGLRAEGPDDMAEKIDMETNNGMW 118

BLAST of ClCG10G008630 vs. NCBI nr
Match: CAN65842.1 (hypothetical protein VITISV_027369 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 8   IDGVQTKKHVWTKEKDGKLIECLME------ESPNAKGLRNKLFSYLDEMAIIFGKDRAN 67
           I G    K VWT  +D KL+ECL+E         +A GLR K F + D+++++FGKDRAN
Sbjct: 376 IRGRGRNKRVWTPGEDEKLVECLVELCVSGKGHKDANGLRLKPFPHFDDLSLVFGKDRAN 435

Query: 68  GLGAEASKDMVKKVD-METNNG 83
           G GA ++ D+++++D +E +NG
Sbjct: 436 GKGAMSAADILEELDQVEASNG 457

BLAST of ClCG10G008630 vs. NCBI nr
Match: XP_038895748.1 (uncharacterized protein LOC120083912 [Benincasa hispida])

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 34  SPNAKGLRNKLFSYLDEMAIIFGKDRANGLGAEASKDMVKKVDMETNNGTYSMVTANRFW 93
           +PNAKGLRNK F + +++AIIFGKDRANGL  E   DM + VD E +N        N FW
Sbjct: 11  NPNAKGLRNKSFPFYEQLAIIFGKDRANGLSVEGPADMFEAVDREMDN--------NDFW 70

Query: 94  CGMTSLCRTH 104
             M     +H
Sbjct: 71  REMDDFYVSH 72

BLAST of ClCG10G008630 vs. NCBI nr
Match: KAA0060172.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-07
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 12 QTKKHVWTKEKDGKLIECLME-----------ESPNAKGLRNKLFSYLDEMAIIFGKDRA 71
          +  +HVWTKE++G L+ECLME             P AKGL NK FSY DE+  +FG+DR 
Sbjct: 6  RASRHVWTKEEEGTLVECLMELVPMRDGNRIMSYPAAKGLLNKPFSYYDELTYVFGRDRV 65

BLAST of ClCG10G008630 vs. NCBI nr
Match: TYJ99310.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.2e-07
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 15 KHVWTKEKDGKLIECLME-------ESPNAKGLRNKLFSYLDEMAIIFGKDRANGLGAEA 72
          +HVWTKE+D  L+ECLME       +S NAKGL NK F Y DE+  +FG+DRA     E 
Sbjct: 9  RHVWTKEEDETLVECLMELVSMGGWKSDNAKGLLNKPFLYYDELTYVFGRDRATNRFVET 68

BLAST of ClCG10G008630 vs. ExPASy TrEMBL
Match: A5BND9 (DDE Tnp4 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_027369 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-08
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 8   IDGVQTKKHVWTKEKDGKLIECLME------ESPNAKGLRNKLFSYLDEMAIIFGKDRAN 67
           I G    K VWT  +D KL+ECL+E         +A GLR K F + D+++++FGKDRAN
Sbjct: 376 IRGRGRNKRVWTPGEDEKLVECLVELCVSGKGHKDANGLRLKPFPHFDDLSLVFGKDRAN 435

Query: 68  GLGAEASKDMVKKVD-METNNG 83
           G GA ++ D+++++D +E +NG
Sbjct: 436 GKGAMSAADILEELDQVEASNG 457

BLAST of ClCG10G008630 vs. ExPASy TrEMBL
Match: A0A5A7UWG2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold542G00470 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-07
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 12 QTKKHVWTKEKDGKLIECLME-----------ESPNAKGLRNKLFSYLDEMAIIFGKDRA 71
          +  +HVWTKE++G L+ECLME             P AKGL NK FSY DE+  +FG+DR 
Sbjct: 6  RASRHVWTKEEEGTLVECLMELVPMRDGNRIMSYPAAKGLLNKPFSYYDELTYVFGRDRV 65

BLAST of ClCG10G008630 vs. ExPASy TrEMBL
Match: A0A5D3BHP6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005230 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 15 KHVWTKEKDGKLIECLME-------ESPNAKGLRNKLFSYLDEMAIIFGKDRANGLGAEA 72
          +HVWTKE+D  L+ECLME       +S NAKGL NK F Y DE+  +FG+DRA     E 
Sbjct: 9  RHVWTKEEDETLVECLMELVSMGGWKSDNAKGLLNKPFLYYDELTYVFGRDRATNRFVET 68

BLAST of ClCG10G008630 vs. ExPASy TrEMBL
Match: A0A2N9GF48 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29069 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 15 KHVWTKEKDGKLIECLMEESPN------------AKGLRNKLFSYLDEMAIIFGKDRANG 74
          KH WT  +D KL+ECL++ + N            A GLRNK   + D++A +F KD+A G
Sbjct: 21 KHQWTTTEDAKLVECLVDMAENGAQPHNVKGHHDAAGLRNKPIPHYDDLAHVFRKDKATG 80

Query: 75 LGAEASKDMVKKVDME 79
            AE   DM + VD E
Sbjct: 81 FSAEGPSDMTQTVDRE 96

BLAST of ClCG10G008630 vs. ExPASy TrEMBL
Match: A0A162AHN3 (Myb_DNA-bind_3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009785 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.6e-06
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 26  LIECLMEESPNAKGLRNKLFSYLDEMAIIFGKDRANGLGAEASKDMVKKVDMETNNGTY 85
           + E  ++  PNAKGLRNK F + DE+A +FGKDRANG G E+  D V+++  +  +  Y
Sbjct: 118 IFEEWLKSHPNAKGLRNKSFPFYDELAQVFGKDRANGEGVESPADAVEEIANDEESNLY 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038886815.19.7e-1268.52uncharacterized protein LOC120077046 [Benincasa hispida][more]
CAN65842.11.1e-0742.68hypothetical protein VITISV_027369 [Vitis vinifera][more]
XP_038895748.12.5e-0748.57uncharacterized protein LOC120083912 [Benincasa hispida][more]
KAA0060172.13.2e-0746.48retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ99310.17.2e-0750.00retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A5BND95.4e-0842.68DDE Tnp4 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_027369 P... [more]
A0A5A7UWG21.6e-0746.48Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BHP63.5e-0750.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9GF482.9e-0640.79Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29069 PE=4 SV=1[more]
A0A162AHN36.6e-0645.76Myb_DNA-bind_3 domain-containing protein OS=Daucus carota subsp. sativus OX=7920... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 33..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G008630.1ClCG10G008630.1mRNA