ClCG09G016440 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G016440
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCYSTM domain-containing protein
LocationCG_Chr09: 32344851 .. 32346148 (+)
RNA-Seq ExpressionClCG09G016440
SyntenyClCG09G016440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTTCTTCTTCTTCTTCTTCAATACAACTAGAATCTTTCCTTTCATAAAGTCCCATTCACACATCTCTCCTCTTTTTTCTTTTTCCAAAAACATTACCAAATAGTGATAAAAGGAAGAGAGAGGGATCCCACAAAACTAATTAATACACACAGAAAAAACAAACCTGAAAAATAACCATAGTTTCTTCAGCTAATTTCTCATTAAATACCCTGTTCTTCCTCTTCTTGTCTTCCCAATTAAGCTTTTGTGTTGGATTGAAGATATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGTTTTTTTTTTTTTTTTTTTGAGTTATGTTCAGGTTGACTTGTTTCTAATTAACTTTAGTTTGATTTAGTATTTTGGGTGCTGTGGAATTTATTTGCAGGAGGGTATTATCAAGGGCCGCCGGTGATGGCACCACCGCAATACGCTGCCCCGCCACCCAAAAGACAGCCGGGGTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTTTCTTTGTTGATAAACTCTGTGTGTTGAATGGTTTTGGTTTCATATATCAAAAGTGAAGGATGATGATTTGAAAAAATTAATATCTGTGTTGTTTTATCCATGTTAAAATACGATAGAAATTAATAGTTCATTATATATATATATATATATATATATATATAAAGAATAACGTGCGAGCATCGAGATGCTTCCAATAGACCATTCTACCGTTCGATTTGGCTTCTTCACGTTCTCCTTTCTCCAGCTTGAATCATATCTAAGTGACAAACATCCTTTCAAGTTTGAACTACACATTTGGTTTGCCTTTTCTGTTTGTTACTCTATGCCTAACAAAGGTTTTAAATTTGTGTTTGCATGCAGCCTTGCAGCTCTATGTTGTTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCAATTATCTTTGTTGCCTGATATCTGAGATATTGTTGCCTTTGTAGCTGTAATTACTTCTTTGTGAGTGGTTTGATTTTGTATAAACTTGGAAACAAGATTGATTGGTGTCTAGAATAAAGCTGTGTTTTCTTGTAAAGTACAGACTTTACTCATTTGATTTCATAGTAACTTTATTTGTCATTACCTAACCAATAAATTTAGTCAGTAAATTTTACCATGCGTGGTTATTTAGGTTTTAAACTTTGAATTCCCTTCTTCGAGAACTTTGGAAGCTAGTGAATGTCTTCTTTACTTCGATAGCGTGACGGTTCCTTGTCATGTCTCGAGGCTAAGGATATGTTGAGGATTCCACATTATAAAGATGAGA

mRNA sequence

TCTTCTTCTTCTTCTTCTTCTTCAATACAACTAGAATCTTTCCTTTCATAAAGTCCCATTCACACATCTCTCCTCTTTTTTCTTTTTCCAAAAACATTACCAAATAGTGATAAAAGGAAGAGAGAGGGATCCCACAAAACTAATTAATACACACAGAAAAAACAAACCTGAAAAATAACCATAGTTTCTTCAGCTAATTTCTCATTAAATACCCTGTTCTTCCTCTTCTTGTCTTCCCAATTAAGCTTTTGTGTTGGATTGAAGATATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGAGGGTATTATCAAGGGCCGCCGGTGATGGCACCACCGCAATACGCTGCCCCGCCACCCAAAAGACAGCCGGGGTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTTTCTTTGTTGATAAACTCTCCTTGCAGCTCTATGTTGTTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCAATTATCTTTGTTGCCTGATATCTGAGATATTGTTGCCTTTGTAGCTGTAATTACTTCTTTGTGAGTGGTTTGATTTTGTATAAACTTGGAAACAAGATTGATTGGTGTCTAGAATAAAGCTGTGTTTTCTTGTAAAGTACAGACTTTACTCATTTGATTTCATAGTAACTTTATTTGTCATTACCTAACCAATAAATTTAGTCAGTAAATTTTACCATGCGTGGTTATTTAGGTTTTAAACTTTGAATTCCCTTCTTCGAGAACTTTGGAAGCTAGTGAATGTCTTCTTTACTTCGATAGCGTGACGGTTCCTTGTCATGTCTCGAGGCTAAGGATATGTTGAGGATTCCACATTATAAAGATGAGA

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGAGGGTATTATCAAGGGCCGCCGGTGATGGCACCACCGCAATACGCTGCCCCGCCACCCAAAAGACAGCCGGGGTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTTTCTTTGTTGATAAACTCTCCTTGCAGCTCTATGTTGTTGCTGTCTCCTTGATGAGTGTTGCTGTGACCCTTCAATTATCTTTGTTGCCTGATATCTGA

Protein sequence

MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVFFVDKLSLQLYVVAVSLMSVAVTLQLSLLPDI
Homology
BLAST of ClCG09G016440 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 6.1e-22
Identity = 64/88 (72.73%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA--KKLV-----FFV 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGW+    +LV     F  
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61 DKLSLQLYVVAVSLMSVAVTLQLSLLPD 82
             +LQLY  AVSLM+ AVTL LS L D
Sbjct: 61 VFAALQLYAAAVSLMNAAVTLPLSFLLD 88

BLAST of ClCG09G016440 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 54/81 (66.67%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVFFVDKLSLQL 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPP+RQP                  +LQL
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP------------------ALQL 60

Query: 61 YVVAVSLMSVAVTLQLSLLPD 82
          Y  AVSLM+ AVTL LS L D
Sbjct: 61 YAAAVSLMNAAVTLPLSFLLD 63

BLAST of ClCG09G016440 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA 47
          MSDPKYAYPYPPP GGYYQGPPVMAPPQYAAPPPKRQPGFLEG  A
Sbjct: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPGFLEGCLA 46

BLAST of ClCG09G016440 vs. NCBI nr
Match: KAB1206726.1 (hypothetical protein CJ030_MR7G013527 [Morella rubra])

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAA-PPPKRQPGFLEGWYAKKLVFFVDKLSLQ 60
          MS+PKYAYPY P QG Y   PPVMAPP YAA PPP+R+PGFLEGWY    V    +LSLQ
Sbjct: 1  MSEPKYAYPY-PAQGAYQGPPPVMAPPLYAAPPPPRREPGFLEGWY----VLEGKQLSLQ 60

Query: 61 LYVVAVSLMSVAVTLQLSLLPD 82
          LYV   S  S A T QLSLLP+
Sbjct: 61 LYVAVASWTSAAATPQLSLLPN 77

BLAST of ClCG09G016440 vs. NCBI nr
Match: KAF9609677.1 (hypothetical protein IFM89_017856 [Coptis chinensis])

HSP 1 Score: 84.0 bits (206), Expect = 6.8e-13
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA 47
          M+DPKYAYPYP P  GYYQGPPVMAPPQYAAPPP+RQPGFLEG  A
Sbjct: 1  MNDPKYAYPYPYPAQGYYQGPPVMAPPQYAAPPPRRQPGFLEGCLA 46

BLAST of ClCG09G016440 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 64/88 (72.73%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA--KKLV-----FFV 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGW+    +LV     F  
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61 DKLSLQLYVVAVSLMSVAVTLQLSLLPD 82
             +LQLY  AVSLM+ AVTL LS L D
Sbjct: 61 VFAALQLYAAAVSLMNAAVTLPLSFLLD 88

BLAST of ClCG09G016440 vs. ExPASy TrEMBL
Match: A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.3e-17
Identity = 54/81 (66.67%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYAKKLVFFVDKLSLQL 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPP+RQP                  +LQL
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP------------------ALQL 60

Query: 61 YVVAVSLMSVAVTLQLSLLPD 82
          Y  AVSLM+ AVTL LS L D
Sbjct: 61 YAAAVSLMNAAVTLPLSFLLD 63

BLAST of ClCG09G016440 vs. ExPASy TrEMBL
Match: A0A6A1V3C6 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G013527 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.6e-14
Identity = 53/82 (64.63%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAA-PPPKRQPGFLEGWYAKKLVFFVDKLSLQ 60
          MS+PKYAYPY P QG Y   PPVMAPP YAA PPP+R+PGFLEGWY    V    +LSLQ
Sbjct: 1  MSEPKYAYPY-PAQGAYQGPPPVMAPPLYAAPPPPRREPGFLEGWY----VLEGKQLSLQ 60

Query: 61 LYVVAVSLMSVAVTLQLSLLPD 82
          LYV   S  S A T QLSLLP+
Sbjct: 61 LYVAVASWTSAAATPQLSLLPN 77

BLAST of ClCG09G016440 vs. ExPASy TrEMBL
Match: A0A314Y8T5 (CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05607 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1  MSDPKYAYPYPPP-QGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA 47
          MSDPKY YPYP   QGGYYQGPPVMAPPQYAAPPP+R+PGFLEG  A
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLA 47

BLAST of ClCG09G016440 vs. ExPASy TrEMBL
Match: A0A6J5XT78 (CYSTM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS39353 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1  MSDPKYAYPYPPP-QGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWYA 47
          M+DPKY YPYP   QGGYYQGPPVMAPPQYAAPPP+R+PGFLEG  A
Sbjct: 1  MNDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREPGFLEGCLA 47

BLAST of ClCG09G016440 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-07
Identity = 33/56 (58.93%), Postives = 34/56 (60.71%), Query Frame = 0

Query: 1  MSDPKYAYPYPPPQGGYYQG--PPVMAPPQY--------AAPPPKRQPGFLEGWYA 47
          MSDPKYAYPYP P G Y QG  PPV  PPQY          PPP R+ GFLEG  A
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLA 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031406.16.1e-2272.73cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v... [more]
KGN43811.11.7e-1666.67hypothetical protein Csa_017361 [Cucumis sativus][more]
KAG6571885.11.1e-1593.48hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAB1206726.11.4e-1364.63hypothetical protein CJ030_MR7G013527 [Morella rubra][more]
KAF9609677.16.8e-1384.78hypothetical protein IFM89_017856 [Coptis chinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SN043.0e-2272.73Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
A0A0A0K7L88.3e-1766.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1[more]
A0A6A1V3C66.6e-1464.63Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G013527 PE=4 SV=1[more]
A0A314Y8T52.8e-1282.98CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN... [more]
A0A6J5XT786.2e-1280.85CYSTM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3935... [more]
Match NameE-valueIdentityDescription
AT4G33660.13.5e-0758.93unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044850Cysteine-rich and transmembrane domain-containing protein WIH1/2-likePANTHERPTHR31568RCG49325, ISOFORM CRA_Acoord: 1..46
NoneNo IPR availablePANTHERPTHR31568:SF105CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-LIKEcoord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G016440.1ClCG09G016440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane