ClCG09G014823 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G014823
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase
Location	CG_Chr09: 27622701 .. 27623353 (+)
RNA-Seq Expression	ClCG09G014823
Synteny	ClCG09G014823

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCAGTCGTTCAATGTTTGCAGGTTTGGAGACAATATCTGTTAGGGTCCAAGTTCGTAGTCAAGACAAACAACAGCTCGATCTGTCACTTCTTCACCCAACCGAAGTTATCGTCCAAGCAAGCCCGATGGCAGGAATGCCTTGCCGAATTTGACTTTCAGTTTGAACATAGACCCGGTAAGTCAACCAAGTGGCAAACGCCCTCAGCCAAAAAAGTGAACATGCGGCCCTGTGCTTGTTTACTCACCTGAAAGCCAATGGCCTGAATGGAACAGTCCGGAAAACCATCAAAACCCACCTGCACAACGATACAGCTGCCCAAGCCTTAATTCAGTTAGCTAGAAAAGGCAAGACTCGTCAATTTTGGGTGGAAGACAATCTCCTTTTCACCAAGGGAAATCGCCTATATGTTCCTCAATCTGGGGAGCTACGGAGACTATTAATGAAAGAGTGTCACGATACGCCGTGGGCCGGACACAACGGTGGGCAAAGAACGTACGCGCTATTGAAACAAGGTTACTACTGGCCAAGCCTCAGAGACGACGTCATGCAATTCACTAAGACCTTTCTTGTCTGTCAACAGGACAAAGTGGATAGGGCGAAACTAGCGGGTCTGCTGGAACCCCTACCAGTGCCCTCAAGGCCATAG

mRNA sequence

ATGTTGGCAGTCGTTCAATGTTTGCAGGTTTGGAGACAATATCTGTTAGGGTCCAAGTTCGTAGTCAAGACAAACAACAGCTCGATCTGTCACTTCTTCACCCAACCGAAGTTATCGTCCAAGCAAGCCCGATGGCAGGAATGCCTTGCCGAATTTGACTTTCAGTTTGAACATAGACCCGTCCGGAAAACCATCAAAACCCACCTGCACAACGATACAGCTGCCCAAGCCTTAATTCAGTTAGCTAGAAAAGGCAAGACTCGTCAATTTTGGGTGGAAGACAATCTCCTTTTCACCAAGGGAAATCGCCTATATGTTCCTCAATCTGGGGAGCTACGGAGACTATTAATGAAAGAGTGTCACGATACGCCGTGGGCCGGACACAACGGTGGGCAAAGAACGTACGCGCTATTGAAACAAGGTTACTACTGGCCAAGCCTCAGAGACGACGTCATGCAATTCACTAAGACCTTTCTTGTCTGTCAACAGGACAAAGTGGATAGGGCGAAACTAGCGGGTCTGCTGGAACCCCTACCAGTGCCCTCAAGGCCATAG

Coding sequence (CDS)

ATGTTGGCAGTCGTTCAATGTTTGCAGGTTTGGAGACAATATCTGTTAGGGTCCAAGTTCGTAGTCAAGACAAACAACAGCTCGATCTGTCACTTCTTCACCCAACCGAAGTTATCGTCCAAGCAAGCCCGATGGCAGGAATGCCTTGCCGAATTTGACTTTCAGTTTGAACATAGACCCGTCCGGAAAACCATCAAAACCCACCTGCACAACGATACAGCTGCCCAAGCCTTAATTCAGTTAGCTAGAAAAGGCAAGACTCGTCAATTTTGGGTGGAAGACAATCTCCTTTTCACCAAGGGAAATCGCCTATATGTTCCTCAATCTGGGGAGCTACGGAGACTATTAATGAAAGAGTGTCACGATACGCCGTGGGCCGGACACAACGGTGGGCAAAGAACGTACGCGCTATTGAAACAAGGTTACTACTGGCCAAGCCTCAGAGACGACGTCATGCAATTCACTAAGACCTTTCTTGTCTGTCAACAGGACAAAGTGGATAGGGCGAAACTAGCGGGTCTGCTGGAACCCCTACCAGTGCCCTCAAGGCCATAG

Protein sequence

MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHRPVRKTIKTHLHNDTAAQALIQLARKGKTRQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSLRDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP

Homology

[Close]

BLAST of ClCG09G014823 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-73
Identity = 140/216 (64.81%), Postives = 162/216 (75.00%), Query Frame = 0


Query: 1    MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHRP 60
            MLAVV CL+ WRQYLLG+KFVVKT+NSS+CHFF QPKLSSKQARWQE LAEFDFQFEH+P
Sbjct: 923  MLAVVHCLRAWRQYLLGAKFVVKTDNSSVCHFFNQPKLSSKQARWQEYLAEFDFQFEHKP 982

Query: 61   ---------------------------------VRKTIKTHLHNDTAAQALIQLARKGKT 120
                                             +R+ I+ +L ND AAQA+IQLA +G T
Sbjct: 983  GRANQAADALSRKSEXAALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGXT 1042

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
            RQF VE++L FTKGN LYVP+SG LR+LL+ ECHDT WAGH G QRTYALLK+GYYWPSL
Sbjct: 1043 RQFXVENDLXFTKGNXLYVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPSL 1102

Query: 181  RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSR 184
            RDDVMQ+TKT L+CQQDKV+R K+A LLEPLP+PSR
Sbjct: 1103 RDDVMQYTKTCLICQQDKVERNKIAXLLEPLPIPSR 1138

[Close]

BLAST of ClCG09G014823 vs. NCBI nr
Match: XP_023537907.1 (uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 2.2e-72
Identity = 132/217 (60.83%), Postives = 166/217 (76.50%), Query Frame = 0


Query: 1    MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHR- 60
            MLAVV CL+VWRQYLLGS+FVVKT+NS+ CHFF QPKL++KQARWQE LAEFDF+FEH+ 
Sbjct: 1000 MLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKA 1059

Query: 61   --------------------------------PVRKTIKTHLHNDTAAQALIQLARKGKT 120
                                             +R  IK HLH D +A+A+++LA+ GKT
Sbjct: 1060 GKSNQAADALSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHLHKDPSAKAVVELAKAGKT 1119

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
            RQFWVE +LL TKGNRLYVP++GELR+ L++ECHDT WAGH G QRTYAL+K+GY+WP++
Sbjct: 1120 RQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWPNM 1179

Query: 181  RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP 185
            RDD+MQ+TKT L+CQQDKV++AK++GLLEPLPVP+RP
Sbjct: 1180 RDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPVPTRP 1216

[Close]

BLAST of ClCG09G014823 vs. NCBI nr
Match: KAA0060055.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.6e-70
Identity = 132/217 (60.83%), Postives = 160/217 (73.73%), Query Frame = 0


Query: 1   MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHR- 60
           MLAVV CL+ WRQYLLGS FVVKT+NS+ CHFFTQPKL+SKQARWQE LAEFDF+FEH+ 
Sbjct: 1   MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 60

Query: 61  --------------------------------PVRKTIKTHLHNDTAAQALIQLARKGKT 120
                                            VR T++  L  D AAQ ++ LA+ GKT
Sbjct: 61  GSSNQAADALSRKQEHAAMCLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 120

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
           RQFWVE++LL TKGNRLYVP++G LR+ L+ ECHDT WAGH G QRTYALLK+GY+WP++
Sbjct: 121 RQFWVEEDLLVTKGNRLYVPKAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 180

Query: 181 RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP 185
           RDDVMQ+TKT L+CQQDKV++ K+AGLL+PLPVP+RP
Sbjct: 181 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRP 217

[Close]

BLAST of ClCG09G014823 vs. NCBI nr
Match: KAA0059106.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.6e-70
Identity = 132/217 (60.83%), Postives = 159/217 (73.27%), Query Frame = 0


Query: 1    MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHR- 60
            MLAVV CL+ WRQYLLGS FVVKT+NS+ CHFFTQPKL+SKQARWQE LAEFDF+FEH+ 
Sbjct: 800  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 859

Query: 61   --------------------------------PVRKTIKTHLHNDTAAQALIQLARKGKT 120
                                             VR T++  L  D AAQ ++ LA+ GKT
Sbjct: 860  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 919

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
            RQFWVED+L  TKGNRLYVP++G LR+ L+ ECHDT WAGH G QRTYALLK+GY+WP++
Sbjct: 920  RQFWVEDDLFVTKGNRLYVPRAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 979

Query: 181  RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP 185
            RDDVMQ+TKT L+CQQDKV++ K+AGLL+PLPVP+RP
Sbjct: 980  RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRP 1016

[Close]

BLAST of ClCG09G014823 vs. NCBI nr
Match: KAA0053507.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 4.7e-70
Identity = 131/217 (60.37%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 1   MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHR- 60
           MLAVV CL+ WRQYLLGS FVVKT+NS+ CHFFTQPKL+SKQARWQE LAEFDF+F+H+ 
Sbjct: 58  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFDHKK 117

Query: 61  --------------------------------PVRKTIKTHLHNDTAAQALIQLARKGKT 120
                                            VR T++  L  D AAQ ++ LA+ GKT
Sbjct: 118 GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKTGKT 177

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
           RQFWVE++LL TKGNRLYVP++G+LR+ L+ ECHDT WAGH G QRTYALLK+GY+WP++
Sbjct: 178 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 237

Query: 181 RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP 185
           RDDVMQ+TKT L+CQQDKV++ K+AGLL+PLPVP+RP
Sbjct: 238 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRP 274

[Close]

BLAST of ClCG09G014823 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 68.6 bits (166), Expect = 8.7e-11
Identity = 55/231 (23.81%), Postives = 105/231 (45.45%), Query Frame = 0


Query: 1    MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEH-- 60
            +L +++ L  +R  L G  F ++T++ S+     + + + +  RW + LA +DF  E+  
Sbjct: 937  LLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLA 996

Query: 61   ----------------------RPV-RKTIKTHLHNDTAAQALI----QLARKGKT---- 120
                                  RP+  ++ K++  +D    A++    +L +   T    
Sbjct: 997  GPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDM 1056

Query: 121  -----------------RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHD-TPWAGHN 180
                             + + +ED +++ + +RL VP   + +  +M+  HD T + GH 
Sbjct: 1057 SAFRSYQKKLELSETFRKNYSLEDEMIYYQ-DRLVVPI--KQQNAVMRLYHDHTLFGGHF 1116

[Close]

BLAST of ClCG09G014823 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 8.7e-11
Identity = 55/231 (23.81%), Postives = 105/231 (45.45%), Query Frame = 0


Query: 1    MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEH-- 60
            +L +++ L  +R  L G  F ++T++ S+     + + + +  RW + LA +DF  E+  
Sbjct: 963  LLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLA 1022

Query: 61   ----------------------RPV-RKTIKTHLHNDTAAQALI----QLARKGKT---- 120
                                  RP+  ++ K++  +D    A++    +L +   T    
Sbjct: 1023 GPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDM 1082

Query: 121  -----------------RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHD-TPWAGHN 180
                             + + +ED +++ + +RL VP   + +  +M+  HD T + GH 
Sbjct: 1083 SAFRSYQKKLELSETFRKNYSLEDEMIYYQ-DRLVVPI--KQQNAVMRLYHDHTLFGGHF 1142

[Close]

BLAST of ClCG09G014823 vs. ExPASy Swiss-Prot
Match: Q4R6I1 (Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-06
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 88  RQFWVEDNLLF-----TKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGY 147
           ++F  +D  LF      K NRL +    E +++L +ECH+     H+G  RT  L++  Y
Sbjct: 41  KKFVFKDKKLFYVGEDRKQNRLVIVSEEEKKKVL-RECHENDSGAHHGISRTLTLVESNY 100

Query: 148 YWPSLRDDVMQFTKTFLVCQQDK 166
           YW S+ +DV Q+      CQ  K
Sbjct: 101 YWTSVTNDVKQWVYACQHCQVAK 122

[Close]

BLAST of ClCG09G014823 vs. ExPASy Swiss-Prot
Match: Q8K259 (Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 100 KGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSLRDDVMQFTKTFL 159
           K NRL V    E +++L +ECH+     H+G  RT  L++ GYYW S+ +DV Q+     
Sbjct: 58  KQNRLVVVSEEEKKKVL-RECHENGPGVHHGISRTLTLVESGYYWTSVTNDVKQWVYACQ 117

Query: 160 VCQQDK 166
            CQ  K
Sbjct: 118 HCQVAK 122

[Close]

BLAST of ClCG09G014823 vs. ExPASy Swiss-Prot
Match: Q9NXP7 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 PE=1 SV=3)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 100 KGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSLRDDVMQFTKTFL 159
           K NRL +    E +++L +ECH+     H+G  RT  L++  YYW S+ +DV Q+     
Sbjct: 58  KQNRLVIVSEEEKKKVL-RECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQ 117

Query: 160 VCQQDK 166
            CQ  K
Sbjct: 118 HCQVAK 122

[Close]

BLAST of ClCG09G014823 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.7e-74
Identity = 140/216 (64.81%), Postives = 162/216 (75.00%), Query Frame = 0


Query: 1    MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHRP 60
            MLAVV CL+ WRQYLLG+KFVVKT+NSS+CHFF QPKLSSKQARWQE LAEFDFQFEH+P
Sbjct: 923  MLAVVHCLRAWRQYLLGAKFVVKTDNSSVCHFFNQPKLSSKQARWQEYLAEFDFQFEHKP 982

Query: 61   ---------------------------------VRKTIKTHLHNDTAAQALIQLARKGKT 120
                                             +R+ I+ +L ND AAQA+IQLA +G T
Sbjct: 983  GRANQAADALSRKSEXAALCMLAHLKASKLTGSIREAIRENLQNDPAAQAIIQLANEGXT 1042

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
            RQF VE++L FTKGN LYVP+SG LR+LL+ ECHDT WAGH G QRTYALLK+GYYWPSL
Sbjct: 1043 RQFXVENDLXFTKGNXLYVPRSGNLRKLLLGECHDTMWAGHAGWQRTYALLKKGYYWPSL 1102

Query: 181  RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSR 184
            RDDVMQ+TKT L+CQQDKV+R K+A LLEPLP+PSR
Sbjct: 1103 RDDVMQYTKTCLICQQDKVERNKIAXLLEPLPIPSR 1138

[Close]

BLAST of ClCG09G014823 vs. ExPASy TrEMBL
Match: A0A5A7UY33 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00110 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70
Identity = 132/217 (60.83%), Postives = 159/217 (73.27%), Query Frame = 0


Query: 1    MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHR- 60
            MLAVV CL+ WRQYLLGS FVVKT+NS+ CHFFTQPKL+SKQARWQE LAEFDF+FEH+ 
Sbjct: 800  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 859

Query: 61   --------------------------------PVRKTIKTHLHNDTAAQALIQLARKGKT 120
                                             VR T++  L  D AAQ ++ LA+ GKT
Sbjct: 860  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 919

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
            RQFWVED+L  TKGNRLYVP++G LR+ L+ ECHDT WAGH G QRTYALLK+GY+WP++
Sbjct: 920  RQFWVEDDLFVTKGNRLYVPRAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 979

Query: 181  RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP 185
            RDDVMQ+TKT L+CQQDKV++ K+AGLL+PLPVP+RP
Sbjct: 980  RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRP 1016

[Close]

BLAST of ClCG09G014823 vs. ExPASy TrEMBL
Match: A0A5A7V2E6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00180 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70
Identity = 132/217 (60.83%), Postives = 160/217 (73.73%), Query Frame = 0


Query: 1   MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHR- 60
           MLAVV CL+ WRQYLLGS FVVKT+NS+ CHFFTQPKL+SKQARWQE LAEFDF+FEH+ 
Sbjct: 1   MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 60

Query: 61  --------------------------------PVRKTIKTHLHNDTAAQALIQLARKGKT 120
                                            VR T++  L  D AAQ ++ LA+ GKT
Sbjct: 61  GSSNQAADALSRKQEHAAMCLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 120

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
           RQFWVE++LL TKGNRLYVP++G LR+ L+ ECHDT WAGH G QRTYALLK+GY+WP++
Sbjct: 121 RQFWVEEDLLVTKGNRLYVPKAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 180

Query: 181 RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP 185
           RDDVMQ+TKT L+CQQDKV++ K+AGLL+PLPVP+RP
Sbjct: 181 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRP 217

[Close]

BLAST of ClCG09G014823 vs. ExPASy TrEMBL
Match: A0A5A7UG93 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00640 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.3e-70
Identity = 131/217 (60.37%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 1   MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHR- 60
           MLAVV CL+ WRQYLLGS FVVKT+NS+ CHFFTQPKL+SKQARWQE LAEFDF+F+H+ 
Sbjct: 58  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFDHKK 117

Query: 61  --------------------------------PVRKTIKTHLHNDTAAQALIQLARKGKT 120
                                            VR T++  L  D AAQ ++ LA+ GKT
Sbjct: 118 GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKTGKT 177

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
           RQFWVE++LL TKGNRLYVP++G+LR+ L+ ECHDT WAGH G QRTYALLK+GY+WP++
Sbjct: 178 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 237

Query: 181 RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP 185
           RDDVMQ+TKT L+CQQDKV++ K+AGLL+PLPVP+RP
Sbjct: 238 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRP 274

[Close]

BLAST of ClCG09G014823 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.9e-70
Identity = 132/217 (60.83%), Postives = 160/217 (73.73%), Query Frame = 0


Query: 1    MLAVVQCLQVWRQYLLGSKFVVKTNNSSICHFFTQPKLSSKQARWQECLAEFDFQFEHR- 60
            MLAVV CL+ WRQYLLGS FVVKT+NS+ CHFFTQPKL+SKQARWQE LAEFDF+FEH+ 
Sbjct: 1005 MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 1064

Query: 61   --------------------------------PVRKTIKTHLHNDTAAQALIQLARKGKT 120
                                             VR T++  L  D AAQ ++ LA+ GKT
Sbjct: 1065 GSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 1124

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLMKECHDTPWAGHNGGQRTYALLKQGYYWPSL 180
            RQFWVE++LL TKGNRLYVP++G LR+ L+ ECHDT WAGH G QRTYALLK+GY+WP++
Sbjct: 1125 RQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1184

Query: 181  RDDVMQFTKTFLVCQQDKVDRAKLAGLLEPLPVPSRP 185
            RDDVMQ+TKT L+CQQDKV++ K+AGLL+PLPVP+RP
Sbjct: 1185 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRP 1221

The following BLAST results are available for this feature:

BLAST of ClCG09G014823 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	1.2e-73	64.81	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
XP_023537907.1	2.2e-72	60.83	uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]	[more]
KAA0060055.1	3.6e-70	60.83	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0059106.1	3.6e-70	60.83	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0053507.1	4.7e-70	60.37	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of ClCG09G014823 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	8.7e-11	23.81	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.7e-11	23.81	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q4R6I1	6.4e-06	33.73	Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN...	[more]
Q8K259	1.1e-05	39.39	Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 ...	[more]
Q9NXP7	1.9e-05	36.36	Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 P...	[more]

BLAST of ClCG09G014823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ6	5.7e-74	64.81	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7UY33	1.7e-70	60.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7V2E6	1.7e-70	60.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold16...	[more]
A0A5A7UG93	2.3e-70	60.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5D3C4R1	2.9e-70	60.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of ClCG09G014823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 1..52 e-value: 1.6E-10 score: 41.2
None	No IPR available	GENE3D	1.10.340.70		coord: 74..165 e-value: 9.2E-20 score: 72.7
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 102..183
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 111..165 e-value: 2.9E-16 score: 59.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G014823.1	ClCG09G014823.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process