ClCG09G014463 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G014463
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CG_Chr09: 26005213 .. 26006387 (+)
RNA-Seq Expression	ClCG09G014463
Synteny	ClCG09G014463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCACAACTTTATCTTCAGATCAAAAAATTCGATTGAGAGCGAGGTAATTGGTTTGGTCAATCATTGTAATTCAGTGAAGGAGCTCTTAGAATTTTTAGAATTTCTCTACTCAAGTAAAGAGCAAGTCCATAGAATGTTTGAAATTTGTATGCAGTTCTTTCGCGCCGAACAGAAAGCAGAGTCTGTGACCAACTACTTTATGAGACTTAAGAGAATAGCTGCCGAACTTACTTTGTTACTACCTTTCAGCCCAGATGTTAAGGTACAACAAGCTCAGCGAGAAAAGATGGCTGTTATGATCTTTCTGAATGGACTTTTACCTGAATTTGGAATGGCCAAAACACAAATTCTTTCTGACTCTAAAATCCCGTCATTAGACGAGGCTTTCAGTCGTGTTCTTCGTATTGAGAGTTCTCAATCCAGTTTATCCATTCCTCAATCCAGCAGCGCCCTTATTAGCAAGAATAATAACTCCAGGGCTCCTTGAGGGATGGATAACAACTTTCAGAGAACTAATTATGATAACTGAAAACTAGATTCTCAGGAGATTGTCTGTAACTACTGTCGTAAGCCTGGTCATTTGAAACGTGACTGTCGGAAATTGTTGTATAAGAATCAACGATCTCAGCAGGCTCAGATAGCTTCCACCAGTGATATGACAGAGAAGTCAGTTACCACTTTCACAGAGGAGTTTGCTAAATTTCAGGCTACGAAGACTCGTTGCAAGCATCATCTTCATCTAATCCTACTGCCACCATTGCTGACACAGGTAATACGAAATGTCTACTTACGTCATCTACCAAATGGGTCATAGACTCTGGTGCCACAGCTCATATGACAGGTAATTCTAGCTTATTCTCTACACCATTGTCCCCTGCCTCTTCCCCATCTGTCACTTTGACAGATGGCTCAACATCCTCTGTCCTTGGTTCTGGCACCATTAACCTTTCTCCATCTTTTTCTCTGCCCTCAGTGTTACATTTGCCTTAACTATCCTTCAATTTAATTTCTGTTAGCCAACTTACTCATGACCTTAACTGTGTTGTCTCGTTTTTTCCTGATTATTGCTTGTTTCAGGATCGTATGATGAAGAAGATTATTGGTAGAGGATATGAGTCAGGAGGCCTTTATCTTTTTGATCACCAGATACCGAAAGTTGTGGCTTGCTGA

mRNA sequence

ATGATGCACAACTTTATCTTCAGATCAAAAAATTCGATTGAGAGCGAGTTCTTTCGCGCCGAACAGAAAGCAGAGTCTGTGACCAACTACTTTATGAGACTTAAGAGAATAGCTGCCGAACTTACTTTGTTACTACCTTTCAGCCCAGATGTTAAGGTACAACAAGCTCAGCGAGAAAAGATGGCTGTTATGATCTTTCTGAATGGACTTTTACCTGAATTTGGAATGGCCAAAACACAAATTCTTTCTGACTCTAAAATCCCGTCATTAGACGAGGCTTTCAGTCGTGTTCTTCGTATTGAGAGTTCTCAATCCAATTCTCAGGAGATTGTCTGTAACTACTGTCGTAAGCCTGGTCATTTGAAACGTGACTGTCGGAAATTGTTGTATAAGAATCAACGATCTCAGCAGGCTCAGATAGCTTCCACCAGTGATATGACAGAGAAGTCAGTTACCACTTTCACAGAGGAGTTTGCTAAATTTCAGGCTACGAAGACTCGTTGCAAGCATCATCTTCATCTAATCCTACTGCCACCATTGCTGACACAGGATCGTATGATGAAGAAGATTATTGGTAGAGGATATGAGTCAGGAGGCCTTTATCTTTTTGATCACCAGATACCGAAAGTTGTGGCTTGCTGA

Coding sequence (CDS)

ATGATGCACAACTTTATCTTCAGATCAAAAAATTCGATTGAGAGCGAGTTCTTTCGCGCCGAACAGAAAGCAGAGTCTGTGACCAACTACTTTATGAGACTTAAGAGAATAGCTGCCGAACTTACTTTGTTACTACCTTTCAGCCCAGATGTTAAGGTACAACAAGCTCAGCGAGAAAAGATGGCTGTTATGATCTTTCTGAATGGACTTTTACCTGAATTTGGAATGGCCAAAACACAAATTCTTTCTGACTCTAAAATCCCGTCATTAGACGAGGCTTTCAGTCGTGTTCTTCGTATTGAGAGTTCTCAATCCAATTCTCAGGAGATTGTCTGTAACTACTGTCGTAAGCCTGGTCATTTGAAACGTGACTGTCGGAAATTGTTGTATAAGAATCAACGATCTCAGCAGGCTCAGATAGCTTCCACCAGTGATATGACAGAGAAGTCAGTTACCACTTTCACAGAGGAGTTTGCTAAATTTCAGGCTACGAAGACTCGTTGCAAGCATCATCTTCATCTAATCCTACTGCCACCATTGCTGACACAGGATCGTATGATGAAGAAGATTATTGGTAGAGGATATGAGTCAGGAGGCCTTTATCTTTTTGATCACCAGATACCGAAAGTTGTGGCTTGCTGA

Protein sequence

MMHNFIFRSKNSIESEFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDEAFSRVLRIESSQSNSQEIVCNYCRKPGHLKRDCRKLLYKNQRSQQAQIASTSDMTEKSVTTFTEEFAKFQATKTRCKHHLHLILLPPLLTQDRMMKKIIGRGYESGGLYLFDHQIPKVVAC

Homology

[Close]

BLAST of ClCG09G014463 vs. NCBI nr
Match: KAA0033068.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK03482.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 245.4 bits (625), Expect = 4.6e-61
Identity = 154/301 (51.16%), Postives = 170/301 (56.48%), Query Frame = 0


Query: 10  KNSIESE--------------FFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQ 69
           KNSIESE              FFRAEQKAESVTNYFMRLK+I A L LLLPFSPDVKVQQ
Sbjct: 31  KNSIESEIIGLVKSKYIECLRFFRAEQKAESVTNYFMRLKKITAALALLLPFSPDVKVQQ 90

Query: 70  AQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDEAFSRVLRIESSQSN--------- 129
           AQREKM V IFLNGLLPEFGM K QILSDSKIPSLD+AF+RVLRIESS +          
Sbjct: 91  AQREKMVVTIFLNGLLPEFGMTKAQILSDSKIPSLDDAFTRVLRIESSPNGVSIPQSSSA 150

Query: 130 -----------------------------SQEIVCNYCRKPGHLKRDCRKLLYKN-QRSQ 189
                                        S +IVCNYC KPGH+KRDCRKLLYKN Q+SQ
Sbjct: 151 LISKNNNPRAPRAMDGNVQRKSYDHRKPYSTKIVCNYCHKPGHIKRDCRKLLYKNSQQSQ 210

Query: 190 QAQIASTSDMTEKSVTTFTEEFAKFQ---------------------------------- 214
            AQIAST D+ E SVT   +E+ KFQ                                  
Sbjct: 211 HAQIASTCDIPEASVTISADEYTKFQNYQDPLQASSSSTPIASTVAPGNTKCLLTSSTKW 270

[Close]

BLAST of ClCG09G014463 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-57
Identity = 157/351 (44.73%), Postives = 181/351 (51.57%), Query Frame = 0


Query: 4   NFIFRSKNSIE------SEFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQ 63
           +F++  K  +        +FFRAEQKAESVT+YFMRLK+I AEL LLLPFSPDVKVQQ Q
Sbjct: 100 DFLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQ 159

Query: 64  REKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDEAFSRVLRIESSQSN----------- 123
           REKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLD+AF+RVLRIESS ++           
Sbjct: 160 REKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALF 219

Query: 124 --------------------SQEIVCNYCRKPGHLKRDCRKLLYKN-QRSQQAQIASTSD 183
                               S EIVCNYCRKPGH+KRDCRKLLYKN QRSQ AQIAST D
Sbjct: 220 SKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCD 279

Query: 184 MTEKSVTTFTEEFAKFQ------------------------------ATK---------- 214
           + E SVT   +EFAKFQ                              +TK          
Sbjct: 280 IPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAH 339

[Close]

BLAST of ClCG09G014463 vs. NCBI nr
Match: KAA0054107.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-44
Identity = 114/216 (52.78%), Postives = 137/216 (63.43%), Query Frame = 0


Query: 16  EFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQREKMAVMIFLNGLLPEFG 75
           +FF  EQKAESVTNYFMRLK+I AEL LLLPFSPDVKVQQAQREKM V+IFLNGLLPEFG
Sbjct: 7   KFFHVEQKAESVTNYFMRLKKITAELALLLPFSPDVKVQQAQREKMVVIIFLNGLLPEFG 66

Query: 76  MAKTQILSDSKIPSLDEAFSRVLRIESSQSNSQEIVCNYCRKPGHLKRDCRKLLYKNQ-- 135
           MAK QILSDSKIPSLD+AF+RVLRIESS +               + +    L+ KN   
Sbjct: 67  MAKAQILSDSKIPSLDDAFTRVLRIESSPNGV------------FIPQSSSALINKNNNP 126

Query: 136 ---RSQQAQIASTSDMTEKSVTTFTEEFAKFQATKTRCKHHLHLILLPPLLTQ------- 195
              R+    IAST  + E SVT   + +AKFQ  +   +       + P +         
Sbjct: 127 RAPRAMDGNIASTCAIPEASVTISADGYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLL 186

Query: 196 ------DRMMKKIIGRGYESGGLYLFDHQIPKVVAC 214
                 DR+ KKIIG+G+ES GLYLF+HQ+ + VAC
Sbjct: 187 ISSTKWDRVTKKIIGKGHESEGLYLFNHQVWQAVAC 210

[Close]

BLAST of ClCG09G014463 vs. NCBI nr
Match: TYK29397.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 3.9e-44
Identity = 113/216 (52.31%), Postives = 136/216 (62.96%), Query Frame = 0


Query: 16  EFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQREKMAVMIFLNGLLPEFG 75
           +FF  EQK ESVTNYFMRLK+I AEL LLLPFSPDVKVQQAQREKM V+IFLNGLLPEFG
Sbjct: 7   KFFHVEQKVESVTNYFMRLKKITAELALLLPFSPDVKVQQAQREKMVVIIFLNGLLPEFG 66

Query: 76  MAKTQILSDSKIPSLDEAFSRVLRIESSQSNSQEIVCNYCRKPGHLKRDCRKLLYKNQ-- 135
           MAK QILSDSKIPSLD+AF+RVLRIESS +               + +    L+ KN   
Sbjct: 67  MAKAQILSDSKIPSLDDAFTRVLRIESSPNGV------------FIPQSSSALINKNNNP 126

Query: 136 ---RSQQAQIASTSDMTEKSVTTFTEEFAKFQATKTRCKHHLHLILLPPLLTQ------- 195
              R+    IAST  + E SVT   + +AKFQ  +   +       + P +         
Sbjct: 127 RAPRAMDGNIASTCAIPEASVTISADGYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLL 186

Query: 196 ------DRMMKKIIGRGYESGGLYLFDHQIPKVVAC 214
                 DR+ KKIIG+G+ES GLYLF+HQ+ + VAC
Sbjct: 187 ISSTKWDRVTKKIIGKGHESEGLYLFNHQVWQAVAC 210

[Close]

BLAST of ClCG09G014463 vs. NCBI nr
Match: TYK30615.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 8.1e-42
Identity = 120/257 (46.69%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 16  EFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQREKMAVMIFLNGLLPEFG 75
           +F RAEQKAESVTNYFMRLK+I AEL LLLPFSPDV                        
Sbjct: 48  QFLRAEQKAESVTNYFMRLKKITAELALLLPFSPDV------------------------ 107

Query: 76  MAKTQILSDSKIPSLDEAFSRVLRIESS-------------------------------- 135
             K QILSDSKIPSLD AF+RVLR ESS                                
Sbjct: 108 --KAQILSDSKIPSLDNAFTRVLRFESSPNGVSIPQSSTSLISKNNNPRAPRAMDGNVHT 167

Query: 136 ------QSNSQEIVCNYCRKPGHLKRDCRKLLYKN-QRSQQAQIASTSDMTEKSVTTFTE 195
                 + +S EIVCNYCRKP H KRDCRKLLYKN Q+SQ AQIAST D+ E S+T    
Sbjct: 168 KSYDHRKPDSTEIVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIASTCDIPEASITISAN 227

Query: 196 EFAKFQ--------------------ATKTRCKHHLHLILLPPLLTQDRMMKKIIGRGYE 214
           E AK Q                       T+C       LL      DR+ KKIIG+GYE
Sbjct: 228 ECAKLQNYQDSLQASSSSTPIASTVVPGNTKC-------LLTSSTKWDRVTKKIIGKGYE 271

[Close]

BLAST of ClCG09G014463 vs. ExPASy TrEMBL
Match: A0A5A7SR90 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00970 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 2.2e-61
Identity = 154/301 (51.16%), Postives = 170/301 (56.48%), Query Frame = 0


Query: 10  KNSIESE--------------FFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQ 69
           KNSIESE              FFRAEQKAESVTNYFMRLK+I A L LLLPFSPDVKVQQ
Sbjct: 31  KNSIESEIIGLVKSKYIECLRFFRAEQKAESVTNYFMRLKKITAALALLLPFSPDVKVQQ 90

Query: 70  AQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDEAFSRVLRIESSQSN--------- 129
           AQREKM V IFLNGLLPEFGM K QILSDSKIPSLD+AF+RVLRIESS +          
Sbjct: 91  AQREKMVVTIFLNGLLPEFGMTKAQILSDSKIPSLDDAFTRVLRIESSPNGVSIPQSSSA 150

Query: 130 -----------------------------SQEIVCNYCRKPGHLKRDCRKLLYKN-QRSQ 189
                                        S +IVCNYC KPGH+KRDCRKLLYKN Q+SQ
Sbjct: 151 LISKNNNPRAPRAMDGNVQRKSYDHRKPYSTKIVCNYCHKPGHIKRDCRKLLYKNSQQSQ 210

Query: 190 QAQIASTSDMTEKSVTTFTEEFAKFQ---------------------------------- 214
            AQIAST D+ E SVT   +E+ KFQ                                  
Sbjct: 211 HAQIASTCDIPEASVTISADEYTKFQNYQDPLQASSSSTPIASTVAPGNTKCLLTSSTKW 270

[Close]

BLAST of ClCG09G014463 vs. ExPASy TrEMBL
Match: A0A5A7UHS1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00150 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 6.5e-45
Identity = 114/216 (52.78%), Postives = 137/216 (63.43%), Query Frame = 0


Query: 16  EFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQREKMAVMIFLNGLLPEFG 75
           +FF  EQKAESVTNYFMRLK+I AEL LLLPFSPDVKVQQAQREKM V+IFLNGLLPEFG
Sbjct: 7   KFFHVEQKAESVTNYFMRLKKITAELALLLPFSPDVKVQQAQREKMVVIIFLNGLLPEFG 66

Query: 76  MAKTQILSDSKIPSLDEAFSRVLRIESSQSNSQEIVCNYCRKPGHLKRDCRKLLYKNQ-- 135
           MAK QILSDSKIPSLD+AF+RVLRIESS +               + +    L+ KN   
Sbjct: 67  MAKAQILSDSKIPSLDDAFTRVLRIESSPNGV------------FIPQSSSALINKNNNP 126

Query: 136 ---RSQQAQIASTSDMTEKSVTTFTEEFAKFQATKTRCKHHLHLILLPPLLTQ------- 195
              R+    IAST  + E SVT   + +AKFQ  +   +       + P +         
Sbjct: 127 RAPRAMDGNIASTCAIPEASVTISADGYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLL 186

Query: 196 ------DRMMKKIIGRGYESGGLYLFDHQIPKVVAC 214
                 DR+ KKIIG+G+ES GLYLF+HQ+ + VAC
Sbjct: 187 ISSTKWDRVTKKIIGKGHESEGLYLFNHQVWQAVAC 210

[Close]

BLAST of ClCG09G014463 vs. ExPASy TrEMBL
Match: A0A5D3DZU1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277G00150 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44
Identity = 113/216 (52.31%), Postives = 136/216 (62.96%), Query Frame = 0


Query: 16  EFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQREKMAVMIFLNGLLPEFG 75
           +FF  EQK ESVTNYFMRLK+I AEL LLLPFSPDVKVQQAQREKM V+IFLNGLLPEFG
Sbjct: 7   KFFHVEQKVESVTNYFMRLKKITAELALLLPFSPDVKVQQAQREKMVVIIFLNGLLPEFG 66

Query: 76  MAKTQILSDSKIPSLDEAFSRVLRIESSQSNSQEIVCNYCRKPGHLKRDCRKLLYKNQ-- 135
           MAK QILSDSKIPSLD+AF+RVLRIESS +               + +    L+ KN   
Sbjct: 67  MAKAQILSDSKIPSLDDAFTRVLRIESSPNGV------------FIPQSSSALINKNNNP 126

Query: 136 ---RSQQAQIASTSDMTEKSVTTFTEEFAKFQATKTRCKHHLHLILLPPLLTQ------- 195
              R+    IAST  + E SVT   + +AKFQ  +   +       + P +         
Sbjct: 127 RAPRAMDGNIASTCAIPEASVTISADGYAKFQNYQDSLQASSSSTFVAPTVASSNTMCLL 186

Query: 196 ------DRMMKKIIGRGYESGGLYLFDHQIPKVVAC 214
                 DR+ KKIIG+G+ES GLYLF+HQ+ + VAC
Sbjct: 187 ISSTKWDRVTKKIIGKGHESEGLYLFNHQVWQAVAC 210

[Close]

BLAST of ClCG09G014463 vs. ExPASy TrEMBL
Match: A0A5D3E5M8 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00270 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.9e-42
Identity = 120/257 (46.69%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 16  EFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQREKMAVMIFLNGLLPEFG 75
           +F RAEQKAESVTNYFMRLK+I AEL LLLPFSPDV                        
Sbjct: 48  QFLRAEQKAESVTNYFMRLKKITAELALLLPFSPDV------------------------ 107

Query: 76  MAKTQILSDSKIPSLDEAFSRVLRIESS-------------------------------- 135
             K QILSDSKIPSLD AF+RVLR ESS                                
Sbjct: 108 --KAQILSDSKIPSLDNAFTRVLRFESSPNGVSIPQSSTSLISKNNNPRAPRAMDGNVHT 167

Query: 136 ------QSNSQEIVCNYCRKPGHLKRDCRKLLYKN-QRSQQAQIASTSDMTEKSVTTFTE 195
                 + +S EIVCNYCRKP H KRDCRKLLYKN Q+SQ AQIAST D+ E S+T    
Sbjct: 168 KSYDHRKPDSTEIVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIASTCDIPEASITISAN 227

Query: 196 EFAKFQ--------------------ATKTRCKHHLHLILLPPLLTQDRMMKKIIGRGYE 214
           E AK Q                       T+C       LL      DR+ KKIIG+GYE
Sbjct: 228 ECAKLQNYQDSLQASSSSTPIASTVVPGNTKC-------LLTSSTKWDRVTKKIIGKGYE 271

[Close]

BLAST of ClCG09G014463 vs. ExPASy TrEMBL
Match: A0A5A7T406 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 3.3e-41
Identity = 119/257 (46.30%), Postives = 132/257 (51.36%), Query Frame = 0


Query: 16  EFFRAEQKAESVTNYFMRLKRIAAELTLLLPFSPDVKVQQAQREKMAVMIFLNGLLPEFG 75
           +F RAEQKAESVTNYFMRLK+I AEL LLLPFSPDV                        
Sbjct: 48  QFLRAEQKAESVTNYFMRLKKITAELALLLPFSPDV------------------------ 107

Query: 76  MAKTQILSDSKIPSLDEAFSRVLRIESS-------------------------------- 135
             K QILSDSKIPSLD AF+RVL  ESS                                
Sbjct: 108 --KAQILSDSKIPSLDNAFTRVLCFESSPNGVSIPQSSTSLISKNNNPRAPRAMDGNVHT 167

Query: 136 ------QSNSQEIVCNYCRKPGHLKRDCRKLLYKN-QRSQQAQIASTSDMTEKSVTTFTE 195
                 + +S EIVCNYCRKP H KRDCRKLLYKN Q+SQ AQIAST D+ E S+T    
Sbjct: 168 KSYDHRKPDSTEIVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIASTCDIPEASITISAN 227

Query: 196 EFAKFQ--------------------ATKTRCKHHLHLILLPPLLTQDRMMKKIIGRGYE 214
           E AK Q                       T+C       LL      DR+ KKIIG+GYE
Sbjct: 228 ECAKLQNYQDSLQASSSSTPIASTVVPGNTKC-------LLTSSTKWDRVTKKIIGKGYE 271

The following BLAST results are available for this feature:

BLAST of ClCG09G014463 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033068.1	4.6e-61	51.16	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK03482.1 gag-pol polyprotein [...	[more]
XP_031744753.1	1.1e-57	44.73	uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]	[more]
KAA0054107.1	1.3e-44	52.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK29397.1	3.9e-44	52.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK30615.1	8.1e-42	46.69	Copia protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG09G014463 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG09G014463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR90	2.2e-61	51.16	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G...	[more]
A0A5A7UHS1	6.5e-45	52.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DZU1	1.9e-44	52.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E5M8	3.9e-42	46.69	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G0027...	[more]
A0A5A7T406	3.3e-41	46.30	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 ...	[more]

BLAST of ClCG09G014463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 111..127 e-value: 0.0034 score: 26.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 111..127 e-value: 1.0E-4 score: 22.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 112..127 score: 9.042855
None	No IPR available	GENE3D	4.10.60.10		coord: 96..141 e-value: 5.1E-7 score: 31.5
None	No IPR available	PANTHER	PTHR34222:SF15	SUBFAMILY NOT NAMED	coord: 12..145
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 12..145
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 102..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G014463.1	ClCG09G014463.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding