ClCG08G013200 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGGCAAAGTGAATCATCTTGTTGATTTTGTAAGAACGCACTTCGCTCATTCTTGTTCCACTAAAACGTTGTTCCACCGCACGTTTTGGCCGCCGACTGCGACCCAGCTTCACGAATGCGGTGTTGTTTTCAGAACGGACAAGGGGAGCAAGAAATGCGCTGTGGACGTAGCGTTTATAGACTATGATGGCTGTCTAGAACTGCCATATACGACGGCTTTAAAACACGTGTGAGGAACTTGATAGCTTACGAGCAATGCCATGCTGGAGAAATGAGGGATGAAGTGAGCAACTTTGCTGTGTTTATGCAATACATAGTCCAAACAGAGCAAGACGTGAAATTGCTGGTTGAGGCTGGGATCATACAGAACAACTTGGGCAGTATCTAA ATGGATGGCAAAGTGAATCATCTTGTTGATTTTGTAAGAACGCACTTCGCTCATTCTTGTTCCACTAAAACGTTGTTCCACCGCACGTTTTGGCCGCCGACTGCGACCCAGCTTCACGAATGCGGTGTTGTTTTCAGAACGGACAAGGGGAGCAAGAAATGCGCTGTGGACGTAGCAACTGCCATATACGACGGCTTTAAAACACGTGTGAGGAACTTGATAGCTTACGAGCAATGCCATGCTGGAGAAATGAGGGATGAAGTGAGCAACTTTGCTGTGTTTATGCAATACATAGTCCAAACAGAGCAAGACGTGAAATTGCTGGTTGAGGCTGGGATCATACAGAACAACTTGGGCAGTATCTAA ATGGATGGCAAAGTGAATCATCTTGTTGATTTTGTAAGAACGCACTTCGCTCATTCTTGTTCCACTAAAACGTTGTTCCACCGCACGTTTTGGCCGCCGACTGCGACCCAGCTTCACGAATGCGGTGTTGTTTTCAGAACGGACAAGGGGAGCAAGAAATGCGCTGTGGACGTAGCAACTGCCATATACGACGGCTTTAAAACACGTGTGAGGAACTTGATAGCTTACGAGCAATGCCATGCTGGAGAAATGAGGGATGAAGTGAGCAACTTTGCTGTGTTTATGCAATACATAGTCCAAACAGAGCAAGACGTGAAATTGCTGGTTGAGGCTGGGATCATACAGAACAACTTGGGCAGTATCTAA MDGKVNHLVDFVRTHFAHSCSTKTLFHRTFWPPTATQLHECGVVFRTDKGSKKCAVDVATAIYDGFKTRVRNLIAYEQCHAGEMRDEVSNFAVFMQYIVQTEQDVKLLVEAGIIQNNLGSI Homology
BLAST of ClCG08G013200 vs. NCBI nr
Match: XP_023546104.1 (UPF0481 protein At3g47200-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023546105.1 UPF0481 protein At3g47200-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33 Identity = 77/124 (62.10%), Postives = 88/124 (70.97%), Query Frame = 0
BLAST of ClCG08G013200 vs. NCBI nr
Match: XP_023546101.1 (UPF0481 protein At3g47200-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546102.1 UPF0481 protein At3g47200-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546103.1 UPF0481 protein At3g47200-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33 Identity = 77/124 (62.10%), Postives = 88/124 (70.97%), Query Frame = 0
BLAST of ClCG08G013200 vs. NCBI nr
Match: XP_022961897.1 (UPF0481 protein At3g47200-like isoform X3 [Cucurbita moschata] >XP_022961898.1 UPF0481 protein At3g47200-like isoform X3 [Cucurbita moschata] >XP_022961899.1 UPF0481 protein At3g47200-like isoform X3 [Cucurbita moschata]) HSP 1 Score: 151.4 bits (381), Expect = 5.1e-33 Identity = 76/124 (61.29%), Postives = 89/124 (71.77%), Query Frame = 0
BLAST of ClCG08G013200 vs. NCBI nr
Match: XP_022961893.1 (UPF0481 protein At3g47200-like isoform X1 [Cucurbita moschata] >XP_022961894.1 UPF0481 protein At3g47200-like isoform X1 [Cucurbita moschata] >XP_022961895.1 UPF0481 protein At3g47200-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 151.4 bits (381), Expect = 5.1e-33 Identity = 76/124 (61.29%), Postives = 89/124 (71.77%), Query Frame = 0
BLAST of ClCG08G013200 vs. NCBI nr
Match: XP_022961896.1 (UPF0481 protein At3g47200-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 151.4 bits (381), Expect = 5.1e-33 Identity = 76/124 (61.29%), Postives = 89/124 (71.77%), Query Frame = 0
BLAST of ClCG08G013200 vs. ExPASy TrEMBL
Match: A0A6J1HBC3 (UPF0481 protein At3g47200-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111462529 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 2.5e-33 Identity = 76/124 (61.29%), Postives = 89/124 (71.77%), Query Frame = 0
BLAST of ClCG08G013200 vs. ExPASy TrEMBL
Match: A0A6J1HD53 (UPF0481 protein At3g47200-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462529 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 2.5e-33 Identity = 76/124 (61.29%), Postives = 89/124 (71.77%), Query Frame = 0
BLAST of ClCG08G013200 vs. ExPASy TrEMBL
Match: A0A6J1HBL7 (UPF0481 protein At3g47200-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462529 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 2.5e-33 Identity = 76/124 (61.29%), Postives = 89/124 (71.77%), Query Frame = 0
BLAST of ClCG08G013200 vs. ExPASy TrEMBL
Match: A0A6J1HD16 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111462969 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23 Identity = 65/123 (52.85%), Postives = 78/123 (63.41%), Query Frame = 0
BLAST of ClCG08G013200 vs. ExPASy TrEMBL
Match: A0A6J1HBD2 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111462535 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 5.7e-22 Identity = 60/124 (48.39%), Postives = 77/124 (62.10%), Query Frame = 0
BLAST of ClCG08G013200 vs. TAIR 10
Match: AT3G50180.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09 Identity = 30/96 (31.25%), Postives = 55/96 (57.29%), Query Frame = 0
BLAST of ClCG08G013200 vs. TAIR 10
Match: AT3G50130.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 56.6 bits (135), Expect = 1.6e-08 Identity = 31/93 (33.33%), Postives = 51/93 (54.84%), Query Frame = 0
BLAST of ClCG08G013200 vs. TAIR 10
Match: AT3G50170.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08 Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 0
BLAST of ClCG08G013200 vs. TAIR 10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07 Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = 0
BLAST of ClCG08G013200 vs. TAIR 10
Match: AT3G50140.1 (Plant protein of unknown function (DUF247) ) HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07 Identity = 29/93 (31.18%), Postives = 49/93 (52.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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