ClCG08G005093 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G005093
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	CCHC-type domain-containing protein
Location	CG_Chr08: 16106008 .. 16106313 (+)
RNA-Seq Expression	ClCG08G005093
Synteny	ClCG08G005093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACCGAAAAGAATGAAGGAAGTTTTATACAACCAACAAGTCCACACTTAGATGCTCACTATGATCATTGGAGCATGTTGATGGAAAATTTTCTTAGATCCAAGGAATATTGGGAGTTGGTAGAACCTGGATATGTTGAACCAGCTAATGTGTCGTTGCAGACGGAAGCCCAACTAAAGAAAAATGATAAAATTAAGCTACAGGACTTGAAACTGAAAAATTATCTCTTCCAATCCATTGACCGCACAATTTTTGAAACCATTCTCAAGAAAAATACTGCCAAGAATTATGGGATGCTATGA

mRNA sequence

ATGACTACCGAAAAGAATGAAGGAAGTTTTATACAACCAACAAGTCCACACTTAGATGCTCACTATGATCATTGGAGCATGTTGATGGAAAATTTTCTTAGATCCAAGGAATATTGGGAGTTGGTAGAACCTGGATATGTTGAACCAGCTAATGTGTCGTTGCAGACGGAAGCCCAACTAAAGAAAAATGATAAAATTAAGCTACAGGACTTGAAACTGAAAAATTATCTCTTCCAATCCATTGACCGCACAATTTTTGAAACCATTCTCAAGAAAAATACTGCCAAGAATTATGGGATGCTATGA

Coding sequence (CDS)

ATGACTACCGAAAAGAATGAAGGAAGTTTTATACAACCAACAAGTCCACACTTAGATGCTCACTATGATCATTGGAGCATGTTGATGGAAAATTTTCTTAGATCCAAGGAATATTGGGAGTTGGTAGAACCTGGATATGTTGAACCAGCTAATGTGTCGTTGCAGACGGAAGCCCAACTAAAGAAAAATGATAAAATTAAGCTACAGGACTTGAAACTGAAAAATTATCTCTTCCAATCCATTGACCGCACAATTTTTGAAACCATTCTCAAGAAAAATACTGCCAAGAATTATGGGATGCTATGA

Protein sequence

MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKNYGML

Homology

[Close]

BLAST of ClCG08G005093 vs. NCBI nr
Match: KAA0033402.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 4.3e-33
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTTE NEGSFIQP  P  + H DHWSM MENFLRSKEYWELVEPGYVEPA+ SLQT AQ 
Sbjct: 1  MTTENNEGSFIQPVIPGFNGHCDHWSMFMENFLRSKEYWELVEPGYVEPASRSLQTNAQR 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAK 97
          KKN ++KL+DLK+KNYLFQ+IDRTI ETIL KN  K
Sbjct: 61 KKNYEMKLKDLKVKNYLFQAIDRTILETILNKNITK 96

[Close]

BLAST of ClCG08G005093 vs. NCBI nr
Match: KAF8404908.1 (hypothetical protein HHK36_009803 [Tetracentron sinense])

HSP 1 Score: 151.0 bits (380), Expect = 5.6e-33
Identity = 71/97 (73.20%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1   MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
           MTT   EGSFIQP  P  D HYDHWSMLMENFLRSKE+W LVEPGY+EPA+ S+QT+AQ 
Sbjct: 299 MTT---EGSFIQPAIPRFDGHYDHWSMLMENFLRSKEFWGLVEPGYIEPASESVQTDAQR 358

Query: 61  KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN 98
           KKND++KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Sbjct: 359 KKNDEMKLKDLKVKNYLFQAIDRTVLDTILKKDTAKD 392

[Close]

BLAST of ClCG08G005093 vs. NCBI nr
Match: BBG96384.1 (ADP glucose pyrophosphorylase large subunit 1 [Prunus dulcis])

HSP 1 Score: 150.2 bits (378), Expect = 9.5e-33
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTT   EGSFIQP  P  D HYDHWSMLMENFLRSKE+W LVEPGY+EPA+ S+QT+AQ 
Sbjct: 1  MTT---EGSFIQPAIPRFDGHYDHWSMLMENFLRSKEFWGLVEPGYIEPASDSVQTDAQR 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN 98
          KKND +KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Sbjct: 61 KKNDDLKLKDLKVKNYLFQAIDRTVLDTILKKDTAKD 94

[Close]

BLAST of ClCG08G005093 vs. NCBI nr
Match: RVW85339.1 (hypothetical protein CK203_045529 [Vitis vinifera])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTT   EGSFIQP  PH D HYDHW+MLMENFLRSKE+W LVEPGY+EP   S+QT+AQ 
Sbjct: 1  MTT---EGSFIQPAIPHFDGHYDHWNMLMENFLRSKEFWGLVEPGYIEPTIESVQTDAQR 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN 98
          KKND++KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Sbjct: 61 KKNDEMKLKDLKVKNYLFQAIDRTVLDTILKKDTAKD 94

[Close]

BLAST of ClCG08G005093 vs. NCBI nr
Match: PNX85109.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium pratense])

HSP 1 Score: 148.7 bits (374), Expect = 2.8e-32
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTT   EGSF+QP  P  D HYDHWSMLMENFLRSKEYWEL+EPGYVEPA+  + T+AQ 
Sbjct: 1  MTT---EGSFVQPAIPRFDGHYDHWSMLMENFLRSKEYWELIEPGYVEPASGVVLTDAQR 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN 98
          KKND++KL+DLK KNYLFQ+IDRT+ ETILKK+T+K+
Sbjct: 61 KKNDEMKLKDLKAKNYLFQAIDRTVLETILKKDTSKD 94

[Close]

BLAST of ClCG08G005093 vs. ExPASy TrEMBL
Match: A0A5A7SQE0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00540 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTTE NEGSFIQP  P  + H DHWSM MENFLRSKEYWELVEPGYVEPA+ SLQT AQ 
Sbjct: 1  MTTENNEGSFIQPVIPGFNGHCDHWSMFMENFLRSKEYWELVEPGYVEPASRSLQTNAQR 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAK 97
          KKN ++KL+DLK+KNYLFQ+IDRTI ETIL KN  K
Sbjct: 61 KKNYEMKLKDLKVKNYLFQAIDRTILETILNKNITK 96

[Close]

BLAST of ClCG08G005093 vs. ExPASy TrEMBL
Match: A0A2N9J8J5 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60817 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 72/97 (74.23%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTT   EGSFIQP  P  D HYDHWSMLMENFLRSKE+WELVEPGY EPA+ S+QT+AQ 
Sbjct: 1  MTT---EGSFIQPAIPRFDGHYDHWSMLMENFLRSKEFWELVEPGYNEPASESVQTDAQQ 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN 98
          KKND++KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Sbjct: 61 KKNDEMKLKDLKVKNYLFQAIDRTVLDTILKKDTAKD 94

[Close]

BLAST of ClCG08G005093 vs. ExPASy TrEMBL
Match: A0A4Y1QX25 (ADP glucose pyrophosphorylase large subunit 1 OS=Prunus dulcis OX=3755 GN=Prudu_005175 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.6e-33
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTT   EGSFIQP  P  D HYDHWSMLMENFLRSKE+W LVEPGY+EPA+ S+QT+AQ 
Sbjct: 1  MTT---EGSFIQPAIPRFDGHYDHWSMLMENFLRSKEFWGLVEPGYIEPASDSVQTDAQR 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN 98
          KKND +KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Sbjct: 61 KKNDDLKLKDLKVKNYLFQAIDRTVLDTILKKDTAKD 94

[Close]

BLAST of ClCG08G005093 vs. ExPASy TrEMBL
Match: A0A438HLQ7 (CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_045529 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.0e-33
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTT   EGSFIQP  PH D HYDHW+MLMENFLRSKE+W LVEPGY+EP   S+QT+AQ 
Sbjct: 1  MTT---EGSFIQPAIPHFDGHYDHWNMLMENFLRSKEFWGLVEPGYIEPTIESVQTDAQR 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN 98
          KKND++KL+DLK+KNYLFQ+IDRT+ +TILKK+TAK+
Sbjct: 61 KKNDEMKLKDLKVKNYLFQAIDRTVLDTILKKDTAKD 94

[Close]

BLAST of ClCG08G005093 vs. ExPASy TrEMBL
Match: A0A2K3M2V4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g041175 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MTTEKNEGSFIQPTSPHLDAHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQL 60
          MTT   EGSF+QP  P  D HYDHWSMLMENFLRSKEYWEL+EPGYVEPA+  + T+AQ 
Sbjct: 1  MTT---EGSFVQPAIPRFDGHYDHWSMLMENFLRSKEYWELIEPGYVEPASGVVLTDAQR 60

Query: 61 KKNDKIKLQDLKLKNYLFQSIDRTIFETILKKNTAKN 98
          KKND++KL+DLK KNYLFQ+IDRT+ ETILKK+T+K+
Sbjct: 61 KKNDEMKLKDLKAKNYLFQAIDRTVLETILKKDTSKD 94

[Close]

BLAST of ClCG08G005093 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 4.3e-07
Identity = 23/78 (29.49%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 20 AHYDHWSMLMENFLRSKEYWELVEPGYVEPANVSLQTEAQLKKNDKIKLQDLKLKNYLFQ 79
          ++YD+WS+ M+  L + + WE+VE G++EP N    ++ Q       + +D K    ++Q
Sbjct: 16 SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75

Query: 80 SIDRTIFETILKKNTAKN 98
           +D   FE +++  +AK+
Sbjct: 76 GLDEDTFEKVVEATSAKD 93

The following BLAST results are available for this feature:

BLAST of ClCG08G005093 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033402.1	4.3e-33	76.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAF8404908.1	5.6e-33	73.20	hypothetical protein HHK36_009803 [Tetracentron sinense]	[more]
BBG96384.1	9.5e-33	73.20	ADP glucose pyrophosphorylase large subunit 1 [Prunus dulcis]	[more]
RVW85339.1	1.2e-32	72.16	hypothetical protein CK203_045529 [Vitis vinifera]	[more]
PNX85109.1	2.8e-32	72.16	retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trifolium ...	[more]

BLAST of ClCG08G005093 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G005093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQE0	2.1e-33	76.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2N9J8J5	2.1e-33	74.23	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A4Y1QX25	4.6e-33	73.20	ADP glucose pyrophosphorylase large subunit 1 OS=Prunus dulcis OX=3755 GN=Prudu_...	[more]
A0A438HLQ7	6.0e-33	72.16	CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_045529 P...	[more]
A0A2K3M2V4	1.3e-32	72.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol...	[more]

BLAST of ClCG08G005093 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	4.3e-07	29.49	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 7..97
None	No IPR available	PANTHER	PTHR34222:SF47	SUBFAMILY NOT NAMED	coord: 7..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G005093.1	ClCG08G005093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding