ClCG08G004860 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAGTCGCCCACAAAGGAACTTCCAAAGTCAAAATGTCGAGGCTCCAATTGTTGACTTCCAAATTTGAAAATTTGAGAATGAATGATGATGAATCAATTGCCGAGTTTAATGTGTGTCTACTGGATATTGCCAATGAATCTTTTGTCCTTGGAGAAAAGATCTCAGAGGAAAGGTTGGTTCAGAAGGTGCTCAGATCTTTGCAAAGAAGTTTGATATGAAAGTAAACTGTTGTAAAAGAGGATTAGGATATTGCATCGTTGAAAGTGGATGAGTTGTTTGGGTCTCTACGAACCTTTGAAATGTCCCTTGACAGGAAACCAGAGAAGAAGACTGAAAGCATTGCTCTCCAATCTGTTGGTAAGCCTCTCAAAGAAGCCACAGACAAAGAATCTAATGAATCTCTAGCTAAATCTATAGTCGTTCTCTCTCTAAACAATTCGATAAAGTACTGAAAAGTTTTGGAAAGAAATTTGGTGGAAAGTCGACTATTTAGCAAACCATTCAACGCAGTTAATAATAAGAAGGATGGCGACAAACCTGTGAGTTCCTATACTCAAAAAGAAAAGAATCTTAGGTGAAGAGAATGCGAAGGTTTTGGACATTTTCAAGCAGAATGTCCAACGTTCCTCAAGAGACAAAATAGAAGCTATGTTGTGACGTTATTAGATGATGAGACAGACTCTACTGAGTTTGAGGCAGATGTTAAAGCTCTTTTCAGTAACATCTCCTCTGACACATCGTCAGGTGATATCTGAATGCATATGTTGAAAATGAGATTGAGGATAATATTCATGTGTCTGATGATCCATTGTATTAGGCGTTGTTCACCAAATGGCATGAAGATATGAAAGTGCTGGATATTCAGAAAGAAGGAATTGAGTCCTTGTTGGCTGACAACCATCGCTTAATGTCAACCATTGCAGAACTAAAACGTGCACTAGTCCATTCTAAGGTTGAAAAGGAATCCATGGTGAAGAACATCAGGATGCTCAATTTTGGCACTAAATTGCTTGAAAACATTCTTTCTAAAGGAAAAACCGCAGGTGATCATCATGGCCTGGGGTTGAGCAATTCTAAGGAGCAATCCACATCCCAATCCTAGAGTAAGGGAAAATAAGCTGTTGAGTTTGTTAAGGCTCAGAACCCAGAAACCTTTGGTGTTGCTAAGGCCTTAACTAGTTACCGACATAGAACATCTAATAGGCACCACAAATCTCGATGGATCTGTCACTTTTGTGGCAAACTTGGTCACATAAGACCCTTCTATCATTAGCTGCTAAATATAACTAGAAGAACTACCAACTATGGTAGAAATCCCCAGTACTTTCATTCTAAAAGGCTAGAAGGAAGAAAGGTAAAAGTTGTTTGGAGAGTAAAGGAGAATCAGTCGAAATGTAACTTAGTTTTGACTTCTCTTAGATCATCTGCTCGGGATGACTGGAATTTTGACAGTGGCAGCTCTTGCCACATGATTTGTGATTGAAATTATCTAACTAATCTCATGCTAGTAAGTGCAGGTAAAGTCACTTTTGGAGATGGAGCCATCAGAAGAATCATTGGGAAGGGAAAGCTCAACGTGCAAGGACTACCTTCTCTTGAGGATGATATGTTGGTCAAAGGATTGAATCCAATCTAATTAGCATCAGTCAGCTTTGTGATAAAAAACTACAAGTAAGTTTCATGAAAGAACAATGTATTGTTACTGATGATGTTAAAACACTTGTTATGGCAGGCACTAGATCATCTGACAACTGCTATTTGTGGAATCTGGAATCTACATCCCCAGTTTGCCATTTAGCTAGGCAAGACGAAGCAGATCACTGA ATGTCAGTCGCCCACAAAGGAACTTCCAAAGTCAAAATGTCGAGGCTCCAATTGTTGACTTCCAAATTTGAAAATTTGAGAATGAATGATGATGAATCAATTGCCGAGTTTAATGTGTGTCTACTGGATATTGCCAATGAATCTTTTGTCCTTGGAGAAAAGATCTCAGAGGAAAGGAAACCAGAGAAGAAGACTGAAAGCATTGCTCTCCAATCTGTTGATGATGAGACAGACTCTACTGAGTTTGAGGCAGATGTTAAAGCTCTTTTCAGTAACATCTCCTCTGACACATCGTCAGATATGAAAGTGCTGGATATTCAGAAAGAAGGAATTGAGTCCTTGTTGGCTGACAACCATCGCTTAATGTCAACCATTGCAGAACTAAAACGTGCACTAGTCCATTCTAAGGTTGAAAAGGAATCCATGGTGAAGAACATCAGGATGCTCAATTTTGGCACTAAATTGCTTGAAAACATTCTTTCTAAAGGAAAAACCGCAGGCACTAGATCATCTGACAACTGCTATTTGTGGAATCTGGAATCTACATCCCCAGTTTGCCATTTAGCTAGGCAAGACGAAGCAGATCACTGA ATGTCAGTCGCCCACAAAGGAACTTCCAAAGTCAAAATGTCGAGGCTCCAATTGTTGACTTCCAAATTTGAAAATTTGAGAATGAATGATGATGAATCAATTGCCGAGTTTAATGTGTGTCTACTGGATATTGCCAATGAATCTTTTGTCCTTGGAGAAAAGATCTCAGAGGAAAGGAAACCAGAGAAGAAGACTGAAAGCATTGCTCTCCAATCTGTTGATGATGAGACAGACTCTACTGAGTTTGAGGCAGATGTTAAAGCTCTTTTCAGTAACATCTCCTCTGACACATCGTCAGATATGAAAGTGCTGGATATTCAGAAAGAAGGAATTGAGTCCTTGTTGGCTGACAACCATCGCTTAATGTCAACCATTGCAGAACTAAAACGTGCACTAGTCCATTCTAAGGTTGAAAAGGAATCCATGGTGAAGAACATCAGGATGCTCAATTTTGGCACTAAATTGCTTGAAAACATTCTTTCTAAAGGAAAAACCGCAGGCACTAGATCATCTGACAACTGCTATTTGTGGAATCTGGAATCTACATCCCCAGTTTGCCATTTAGCTAGGCAAGACGAAGCAGATCACTGA MSVAHKGTSKVKMSRLQLLTSKFENLRMNDDESIAEFNVCLLDIANESFVLGEKISEERKPEKKTESIALQSVDDETDSTEFEADVKALFSNISSDTSSDMKVLDIQKEGIESLLADNHRLMSTIAELKRALVHSKVEKESMVKNIRMLNFGTKLLENILSKGKTAGTRSSDNCYLWNLESTSPVCHLARQDEADH Homology
BLAST of ClCG08G004860 vs. NCBI nr
Match: XP_038896219.1 (uncharacterized protein LOC120084497 [Benincasa hispida]) HSP 1 Score: 102.8 bits (255), Expect = 3.4e-18 Identity = 78/171 (45.61%), Postives = 96/171 (56.14%), Query Frame = 0
BLAST of ClCG08G004860 vs. NCBI nr
Match: KAA0059847.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24801.1 gag-pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 101.3 bits (251), Expect = 9.8e-18 Identity = 76/237 (32.07%), Postives = 122/237 (51.48%), Query Frame = 0
BLAST of ClCG08G004860 vs. NCBI nr
Match: KAA0035264.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07573.1 gag-pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 90.5 bits (223), Expect = 1.7e-14 Identity = 67/215 (31.16%), Postives = 108/215 (50.23%), Query Frame = 0
BLAST of ClCG08G004860 vs. NCBI nr
Match: KAA0056457.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29070.1 gag-pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 89.0 bits (219), Expect = 5.0e-14 Identity = 65/198 (32.83%), Postives = 101/198 (51.01%), Query Frame = 0
BLAST of ClCG08G004860 vs. NCBI nr
Match: XP_024019486.1 (uncharacterized protein LOC112091030 [Morus notabilis]) HSP 1 Score: 87.8 bits (216), Expect = 1.1e-13 Identity = 63/175 (36.00%), Postives = 98/175 (56.00%), Query Frame = 0
BLAST of ClCG08G004860 vs. ExPASy TrEMBL
Match: A0A5D3DMG6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00490 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 4.7e-18 Identity = 76/237 (32.07%), Postives = 122/237 (51.48%), Query Frame = 0
BLAST of ClCG08G004860 vs. ExPASy TrEMBL
Match: A0A5A7SVG0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00050 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 8.4e-15 Identity = 67/215 (31.16%), Postives = 108/215 (50.23%), Query Frame = 0
BLAST of ClCG08G004860 vs. ExPASy TrEMBL
Match: A0A5D3E0N2 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001900 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 2.4e-14 Identity = 65/198 (32.83%), Postives = 101/198 (51.01%), Query Frame = 0
BLAST of ClCG08G004860 vs. ExPASy TrEMBL
Match: A0A5D3BVD8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00400 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 2.7e-13 Identity = 73/248 (29.44%), Postives = 115/248 (46.37%), Query Frame = 0
BLAST of ClCG08G004860 vs. ExPASy TrEMBL
Match: A0A5A7U4G8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001030 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 7.8e-13 Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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