ClCG08G004670 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G004670
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSerine/threonine-protein kinase VRK1-like
LocationCG_Chr08: 14777053 .. 14779571 (+)
RNA-Seq ExpressionClCG08G004670
SyntenyClCG08G004670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAGTTGCATCAACATTTTGGAGATGAAACAAAACTATACCAAAAATTTTGGAGATGAAGCAAAGTTGCACCAATATTTTGGAGATGAAGCGAAACTGCACCAGCATTTTAGAGATGGAGCAAAGTTGCACTATCATTGTGGAGATAGAAGGAAGTTGCACCAACATTGTGGAGATGGAGCGAAGCTGCACCAACATTTAGAAGATGGAGCGAAGATGCACCAACATTCTAGAGATAGAAGGAAGCTGCACCAGCATTGTGGAGATGAAGCAAAACTGCACCAACATTATAGAGATAGAACGAAGTTGCACCATCATTTTGGAGATATAACGAATTTGTTGTTGGGTTTTATGCCCTAAACCTCGTAGATTATAAATCTAATTATTTGACCGTCATTAAATCATTAATAAAAGTTAATTCAATAAGCGTTATTGATTTTTTTTTTTTTTGTTTATTTTGTCTTAATAACCATAAATCCAATAAACTAACATCCTAGGTTGTTTTATGAATCTTGAACTATCTATGGGGACATACGGAGATCAATGTTCAAGATACAGTCTAAAGGGTCTACAGTATAGGGATAAGACTGTGTACCTTATCCTGATGACACTATGGATATGACCCACTTTGTATTTGATACAAACGCAATGATCTAACGCATTCGTGTAGGTGACATGCGAGTGGGGGTATCCTATGCAATGCGTTTGCATAATACTGGACCACGAAATAGTAATCACTAGATGTAACTCCGTCTACTAGTTAGGTTTCTATTTAAATAGGATAACCTAGGCAACTTAATCTTAATCCTGAGTATATTATGAACTCCTATCCACGAGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCCATTTACTGACTTAATATGCCTACCATCTTGAGGACAAGACCAAGTGGGAAGCTAGGGACATAATTATACAAGATGGAATTCACTCATTCTCATCTTTAGGGTAAATAGATAAGTGTTCCCTTAAGTGGTGTCTCCGGAACTTGAACAAAGGTTCCTACACTCTCACTGGCCCAAGAGGGGTTTTTGTTTAATGGTTGGACCATAAATAGGTTGTTCAATAGAGGAGCACTGATACTTAAGAATTTAGAAGTAACCCATGTGTAAAATGATAATTTGACCCAACTGGTGTCACGAATACTTGTGAATGACTAATTTGTTGTTATTGGTCTATATCCATGGACACAGAAATATATCTATAGTGAGAAGAGTGCAGTTGTGGGTCTTTAGTAGAGTGTACCCATAGTTAACGAATATTGATTAATGTGGTTAATGAATTTAGCCGATTATTCTCATATTGTTGGAGCTTTTGATCTATAGGTCCATTTGGTCCCCTTCCTAGCTCGTAAAGAGTGATAAGGTATTTATGTCTTGAATGAAATTTGAAATGTTCAAATTTACTTAGGGAAATAATATAATGTAGGATGATATATCATAATATAAAATTTATTTTGAACTTTATAATATGAATTTAATTTTGGATATGATACAAAATTAATTTTTGAGAGAGTTAAATATTTGAAGAAGTTCAAATATTAATATGAATTAGATTCATATTAAAACTATAGATTAAAATTAATGTGTATTAGATGCACATTAAAACTATAAGTTATGAGATAATAATAATTGAATATGATTCAAATGTAGGTTAAATTAAATATTAGATATTTAATTTGAAAATTAATTAATTAAAGAAATAATTTTCTTAATTTATTTTAATTAAATTTGACTTAATTAAATTAAATGAATTAAAACTATATGTTATATGAGAGATGTTAATTTAAATATGATTTAAATGAAATAATTAATTAAGTTAGATTTAATTAGTTATTAATTATTAATTATTTATTTAATTTTTAAATTAAATAATTTAATTGATTAATTAATTAATTAAAAAGTTAACTCCCATATGTGGGAGTTATGCTTTATGTGGTTTAATCACACGTCTGATTGCTCTCTCAATAAAAACCTACAAAAGTAAGAGAGAGAGAGGAAGTTTTTTCTTTCGATAAAAATTATCTCTAATTTTCTCCCTTTATCAAGGATCCACAATCCTTCATCTCATCTGCCAGAGAATAGGAGAGGTTCGTGGTGGTAGTGTTTAGGGTTGACAATGAATGTAAGCTTCTATCTCTAAAGCATGCTTAACCCTATAATTAATATAGTAGGTTTTTTGTATTGTTTTTTTTTCAATGTATTAGTATTTCAAGATCTCAATTTATTTCAAATATGGTTATGTATTTGCTTCTGCTGTGTTAGGGATTTCAACCCTTTTAGCTATACCATCATTCTAGAGATGGAGCGAAGTTGAACCATCATTCTAGAGATGCAGAGAAGCTACACCAGCATTCTAGAGATGGCTTGAAGTTGCACCAACATTTTGGAGATGGAACAAAGATGCACGAGTATTTTGGAGATGGAACAAAGCTACACTGGCAGTCTAGAGATGGAATGAAACTGCACCAGCATTTTAGAGATGGCTAG

mRNA sequence

ATGGAGAAAAGTTGCATCAACATTTTGGAGATGAAACAAAACTATACCAAAAATTTTGGAGATGAAGCAAAGTTGCACCAATATTTTGGAGATGAAGCGAAACTGCACCAGCATTTTAGAGATGGAGCAAAGTTGCACTATCATTGTGGAGATAGAAGGAAGTTGCACCAACATTGTGGAGATGGAGCGAAGCTGCACCAACATTTAGAAGATGGAGCGAAGATGCACCAACATTCTAGAGATAGAAGGAAGCTGCACCAGCATTATGGCTTGAAGTTGCACCAACATTTTGGAGATGGAACAAAGATGCACGAGTATTTTGGAGATGGAACAAAGCTACACTGGCAGTCTAGAGATGGAATGAAACTGCACCAGCATTTTAGAGATGGCTAG

Coding sequence (CDS)

ATGGAGAAAAGTTGCATCAACATTTTGGAGATGAAACAAAACTATACCAAAAATTTTGGAGATGAAGCAAAGTTGCACCAATATTTTGGAGATGAAGCGAAACTGCACCAGCATTTTAGAGATGGAGCAAAGTTGCACTATCATTGTGGAGATAGAAGGAAGTTGCACCAACATTGTGGAGATGGAGCGAAGCTGCACCAACATTTAGAAGATGGAGCGAAGATGCACCAACATTCTAGAGATAGAAGGAAGCTGCACCAGCATTATGGCTTGAAGTTGCACCAACATTTTGGAGATGGAACAAAGATGCACGAGTATTTTGGAGATGGAACAAAGCTACACTGGCAGTCTAGAGATGGAATGAAACTGCACCAGCATTTTAGAGATGGCTAG

Protein sequence

MEKSCINILEMKQNYTKNFGDEAKLHQYFGDEAKLHQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMHQHSRDRRKLHQHYGLKLHQHFGDGTKMHEYFGDGTKLHWQSRDGMKLHQHFRDG
Homology
BLAST of ClCG08G004670 vs. NCBI nr
Match: XP_038887242.1 (LWamide neuropeptides-like [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 5.5e-17
Identity = 57/112 (50.89%), Postives = 69/112 (61.61%), Query Frame = 0

Query: 20  GDEAKLHQYFGDEAKLHQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMHQHS 79
           G++AK HQYFGDEAKLHQ+  D AK H + GD  KLHQ+ GD  K HQ+L D AK HQ+ 
Sbjct: 52  GEKAKPHQYFGDEAKLHQYLEDKAKPHQYLGDEVKLHQYLGDETKSHQYLGDEAKPHQYL 111

Query: 80  RDRRKLHQHYG--LKLHQHFGDGTKMHEYFGDGTKLHWQSRDGMKLHQHFRD 130
            D  K HQ+ G   K HQ+ GD  K  +Y GD  K H    D +K HQ+  D
Sbjct: 112 GDEAKPHQYLGDEEKPHQYLGDEAKSFQYLGDEAKPHQYLGDEVKPHQYLGD 163

BLAST of ClCG08G004670 vs. NCBI nr
Match: KAG0710032.1 (1-acyl-sn-glycerol-3-phosphate acyltransferase delta [Chionoecetes opilio])

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-10
Identity = 49/107 (45.79%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 26  HQYFGDEAKLHQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMHQHSRDRRKL 85
           HQ+  D    HQH RDG   H H  D    HQ   D    HQH  DG   HQH+RD    
Sbjct: 362 HQHACDGTTGHQHARDGTTGHQHTRDGTTGHQDARDCTTGHQHARDGTTGHQHARDGTTG 421

Query: 86  HQHY--GLKLHQHFGDGTKMHEYFGDGTKLHWQSRDGMKLHQHFRDG 131
           HQH   G   HQH  DGT  H++  DGT  H  +RDG   HQH RDG
Sbjct: 422 HQHARDGTTGHQHARDGTTGHQHARDGTTGHQHARDGTTGHQHARDG 468

BLAST of ClCG08G004670 vs. NCBI nr
Match: XP_029376745.1 (serine/threonine-protein kinase VRK1-like isoform X1 [Echeneis naucrates])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 0

Query: 17  KNFGDEAKLHQYFGDEAKLHQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMH 76
           +++GD  + HQ +GD  + HQ + D  + H   GD  + HQ  GD  + HQ   D  ++H
Sbjct: 445 QDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRLH 504

Query: 77  QHSRDRRKLHQHYG--LKLHQHFGDGTKMHEYFGDGTKLHWQSRDGMKLHQHFRD 130
           Q   D  +LHQ YG   + HQ +GD   +H+ +GD  + H    D  + HQ + D
Sbjct: 505 QDYGDSHRLHQDYGDSHRPHQDYGDSHHLHQDYGDSHRPHQDYGDSHRPHQDYGD 559

BLAST of ClCG08G004670 vs. NCBI nr
Match: XP_029376746.1 (serine/threonine-protein kinase VRK1-like isoform X2 [Echeneis naucrates])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0

Query: 17  KNFGDEAKLHQYFGDEAKLHQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMH 76
           +++GD  + HQ +GD  + HQ + D  + H   GD  + HQ  GD  +LHQ   D  ++H
Sbjct: 445 QDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRLHQDYGDSHRLH 504

Query: 77  QHSRDRRKLHQHYG--LKLHQHFGDGTKMHEYFGDGTKLHWQSRDGMKLHQ 126
           Q   D  + HQ YG    LHQ +GD  + H+ +GD  + H    D  + HQ
Sbjct: 505 QDYGDSHRPHQDYGDSHHLHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQ 555

BLAST of ClCG08G004670 vs. NCBI nr
Match: KAG0717318.1 (Activating signal cointegrator 1 complex subunit 3 [Chionoecetes opilio])

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-06
Identity = 37/79 (46.84%), Postives = 41/79 (51.90%), Query Frame = 0

Query: 36  HQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMHQHSRDRRKLHQHY--GLKL 95
           HQH RDG   H H  D    HQH  DG   HQH  DG   HQH+RD    HQH   G   
Sbjct: 9   HQHARDGTTGHQHARDGTTGHQHAHDGTTGHQHARDGTTGHQHARDSTTGHQHTRDGTTG 68

Query: 96  HQHFGDGTKMHEYFGDGTK 113
           HQH  DGT  H++  D T+
Sbjct: 69  HQHTRDGTTGHQHTRDSTR 87

BLAST of ClCG08G004670 vs. ExPASy TrEMBL
Match: A0A665TGK9 (Serine/threonine-protein kinase VRK1-like OS=Echeneis naucrates OX=173247 GN=LOC115055234 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.0e-08
Identity = 39/115 (33.91%), Postives = 60/115 (52.17%), Query Frame = 0

Query: 17  KNFGDEAKLHQYFGDEAKLHQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMH 76
           +++GD  + HQ +GD  + HQ + D  + H   GD  + HQ  GD  + HQ   D  ++H
Sbjct: 445 QDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRPHQDYGDSHRLH 504

Query: 77  QHSRDRRKLHQHYG--LKLHQHFGDGTKMHEYFGDGTKLHWQSRDGMKLHQHFRD 130
           Q   D  +LHQ YG   + HQ +GD   +H+ +GD  + H    D  + HQ + D
Sbjct: 505 QDYGDSHRLHQDYGDSHRPHQDYGDSHHLHQDYGDSHRPHQDYGDSHRPHQDYGD 559

BLAST of ClCG08G004670 vs. ExPASy TrEMBL
Match: A0A7E4RBQ6 (Uncharacterized protein OS=Cimex lectularius OX=79782 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 35/114 (30.70%), Postives = 47/114 (41.23%), Query Frame = 0

Query: 17  KNFGDEAKLHQYFGDEAKLHQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMH 76
           K+ G     H++ G+    H+H       H H G     H+H G  A  H H   G  +H
Sbjct: 54  KHDGKSKHEHEHHGNGDHKHEHLGKAQHKHKHHGLAAHSHKHAGHAAHSHAHKGHGDHVH 113

Query: 77  QHSRDRRKLHQHYGLKLHQHFGDGTKMHEYFGDGTKLHWQSRDGMKLHQHFRDG 131
            HS      H H+G   H H   G   H++  DG+  HW   +G   H H  DG
Sbjct: 114 GHSGKGHHSHDHFGHAEHGHKHTGLGSHKHQHDGSAHHWHKHNGDGKHHHKHDG 167

BLAST of ClCG08G004670 vs. ExPASy TrEMBL
Match: A0A210QTU8 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT15722 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.5e-04
Identity = 35/117 (29.91%), Postives = 48/117 (41.03%), Query Frame = 0

Query: 20  GDEAKLHQYFGDEAKLHQHFRDGAKLHYHCGDRRKLHQHCGDGAKLHQHLEDGAKMHQHS 79
           G + K+H   G   K+H      ++LH  CG  RK+H+ CG   +LH       K+H   
Sbjct: 270 GSKRKVHNLCGSNRKIHSLCGSSSRLHSLCGSHRKIHRLCGSNYRLHSLCGSNRKVHSPR 329

Query: 80  RDRRKLHQHYG------------LKLHQHFGDGTKMHEYFGDGTKLHWQSRDGMKLH 125
              RK+H  YG             KLH   G   K+H   G   K+H       K+H
Sbjct: 330 GSNRKIHSLYGSNRKIQSLCGSNCKLHSLCGSHRKIHSLCGSNRKVHSPRGSNRKIH 386

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887242.15.5e-1750.89LWamide neuropeptides-like [Benincasa hispida][more]
KAG0710032.12.2e-1045.791-acyl-sn-glycerol-3-phosphate acyltransferase delta [Chionoecetes opilio][more]
XP_029376745.11.0e-0733.91serine/threonine-protein kinase VRK1-like isoform X1 [Echeneis naucrates][more]
XP_029376746.11.8e-0735.14serine/threonine-protein kinase VRK1-like isoform X2 [Echeneis naucrates][more]
KAG0717318.14.4e-0646.84Activating signal cointegrator 1 complex subunit 3 [Chionoecetes opilio][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A665TGK95.0e-0833.91Serine/threonine-protein kinase VRK1-like OS=Echeneis naucrates OX=173247 GN=LOC... [more]
A0A7E4RBQ62.0e-0430.70Uncharacterized protein OS=Cimex lectularius OX=79782 PE=4 SV=1[more]
A0A210QTU87.5e-0429.91Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT15722 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G004670.1ClCG08G004670.1mRNA