ClCG08G004630 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G004630
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
LocationCG_Chr08: 14683970 .. 14684569 (+)
RNA-Seq ExpressionClCG08G004630
SyntenyClCG08G004630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATGTGTTAATCAAGTGCCCACGAGCTCAGCTTATCTGGAGCAAAATTTATCAGTTGCCATCTATGGATGATGCCTACAACAACAATTTCGGAGAAAGGTGGTCAACGATCAACTCTTCTTGTCCAAAGGAAGAGCTCAATATTTTTGCAATTACATGTTGGTCCATCTGGAATGACAGAAACACCATCAATCAGGGGAAACCAGTTCCAATTTACACATCAGTAGAGTGGATACTAAAATACTACAACTCTTTTATTCACGCTTCGAAGGATGAGTACAGTGGTCGAAGTACCTTATCCCAAATTTCCCATTCAACTACCTAATGTTGGTCAAAGCCTCCTCCATGTTTCCTAAAACTGAATGTTGATGCAGCTTGGAAGGAAGACCTAACTTCAACAGGGCTGGGGGCGTCATTAAGAGATTCGAATGGCTTCCTCCTCGACGTTTTTGCCCAAGCTCTTGAACTGGACTTTGCCCCCCCCCCCCCCCCCCCCTCCGGCAGAGTTATTGGCTATTCGAGAAGCTCTTTAATGGGCTCTTCTCCAAAACTTTTCCAACTTAATCATCAAATCAAATTGTCTGCAGGCTATTAA

mRNA sequence

ATGGATCATGTGTTAATCAAGTGCCCACGAGCTCAGCTTATCTGGAGCAAAATTTATCAGTTGCCATCTATGGATGATGCCTACAACAACAATTTCGGAGAAAGGTGGTCAACGATCAACTCTTCTTGTCCAAAGGAAGAGCTCAATATTTTTGCAATTACATGTTGGTCCATCTGGAATGACAGAAACACCATCAATCAGGGGAAACCAGTTCCAATTTACACATCAGTAGAGTGGATACTAAAATACTACAACTCTTTTATTCACGCTTCGAAGGATGAGTACAGTGGTCGAACTTGGAAGGAAGACCTAACTTCAACAGGGCTGGGGGCGTCATTAAGAGATTCGAATGGCTTCCTCCTCGACGTTTTTGCCCAAGCTCTTGAACTGGACTTTGCCCCCCCCCCCCCCCCCCCCTCCGGCAGAGTTATTGGCTATTCGAGAAGCTCTTTAATGGGCTCTTCTCCAAAACTTTTCCAACTTAATCATCAAATCAAATTGTCTGCAGGCTATTAA

Coding sequence (CDS)

ATGGATCATGTGTTAATCAAGTGCCCACGAGCTCAGCTTATCTGGAGCAAAATTTATCAGTTGCCATCTATGGATGATGCCTACAACAACAATTTCGGAGAAAGGTGGTCAACGATCAACTCTTCTTGTCCAAAGGAAGAGCTCAATATTTTTGCAATTACATGTTGGTCCATCTGGAATGACAGAAACACCATCAATCAGGGGAAACCAGTTCCAATTTACACATCAGTAGAGTGGATACTAAAATACTACAACTCTTTTATTCACGCTTCGAAGGATGAGTACAGTGGTCGAACTTGGAAGGAAGACCTAACTTCAACAGGGCTGGGGGCGTCATTAAGAGATTCGAATGGCTTCCTCCTCGACGTTTTTGCCCAAGCTCTTGAACTGGACTTTGCCCCCCCCCCCCCCCCCCCCTCCGGCAGAGTTATTGGCTATTCGAGAAGCTCTTTAATGGGCTCTTCTCCAAAACTTTTCCAACTTAATCATCAAATCAAATTGTCTGCAGGCTATTAA

Protein sequence

MDHVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDRNTINQGKPVPIYTSVEWILKYYNSFIHASKDEYSGRTWKEDLTSTGLGASLRDSNGFLLDVFAQALELDFAPPPPPPSGRVIGYSRSSLMGSSPKLFQLNHQIKLSAGY
Homology
BLAST of ClCG08G004630 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-10
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 0

Query: 3    HVLIKCPRAQLIWSKIYQLPSMDDAYNN-NFGERWSTINSSCPKEELNIFAITCWSIWND 62
            H    C RA+ IW  ++   +   A +N +F E WS++      ++LN+ AIT W IWND
Sbjct: 1185 HAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWND 1244

Query: 63   RNTINQGKPV-PIYTSVEWILKYYNSFIHASKDEYSGRT 100
            RN++  GK V P+    EW+  + +S   A    YS RT
Sbjct: 1245 RNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRT 1283

BLAST of ClCG08G004630 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 54.7 bits (130), Expect = 9.2e-04
Identity = 30/119 (25.21%), Postives = 50/119 (42.02%), Query Frame = 0

Query: 3    HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDR 62
            H L  CPRA+ +W              ++  +    +++S    EL +F + CWSIW++R
Sbjct: 1105 HALFSCPRAKAVWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELELFLVLCWSIWHER 1164

Query: 63   NTINQGKPVPIYTSV-EWILKYYNSFIHASKDEYSGRTWKEDLTSTGLGASLRDSNGFL 121
            N I  G  V    +V  +   Y   F  A           + +T++G     R S+ F+
Sbjct: 1165 NAIYHGNSVRTPAAVAAYAPSYLTEFQQARAKN------AKPVTASGAATPSRPSSEFI 1217

BLAST of ClCG08G004630 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-10
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 0

Query: 3    HVLIKCPRAQLIWSKIYQLPSMDDAYNN-NFGERWSTINSSCPKEELNIFAITCWSIWND 62
            H    C RA+ IW  ++   +   A +N +F E WS++      ++LN+ AIT W IWND
Sbjct: 1185 HAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWND 1244

Query: 63   RNTINQGKPV-PIYTSVEWILKYYNSFIHASKDEYSGRT 100
            RN++  GK V P+    EW+  + +S   A    YS RT
Sbjct: 1245 RNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRT 1283

BLAST of ClCG08G004630 vs. ExPASy TrEMBL
Match: A0A2N9HK89 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39966 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 22/68 (32.35%), Postives = 33/68 (48.53%), Query Frame = 0

Query: 3    HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDR 62
            H L  CP AQ  W     L  +  +   NF + W  +    P  ++ +F+ TCW+IWN R
Sbjct: 1386 HALWVCPHAQAAWGDATDLKEIRKSNFQNFTDLWCQLGKRDPPFDMEVFSTTCWAIWNRR 1445

Query: 63   NTINQGKP 71
            N +   +P
Sbjct: 1446 NKVRLNQP 1453

BLAST of ClCG08G004630 vs. ExPASy TrEMBL
Match: A0A2N9GZG3 (Sodium/hydrogen exchanger OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32805 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 22/68 (32.35%), Postives = 33/68 (48.53%), Query Frame = 0

Query: 3   HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDR 62
           H L  CP AQ  W     L  +  +   NF + W  +    P  ++ +F+ TCW+IWN R
Sbjct: 559 HALWVCPHAQAAWGDATDLKEIRKSNFQNFTDLWCQLGKRDPPFDMEVFSTTCWAIWNRR 618

Query: 63  NTINQGKP 71
           N +   +P
Sbjct: 619 NKVRLNQP 626

BLAST of ClCG08G004630 vs. ExPASy TrEMBL
Match: A0A2N9FQ02 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16921 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 24/69 (34.78%), Postives = 34/69 (49.28%), Query Frame = 0

Query: 3    HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDR 62
            H L  CP  Q  W K   L     +   NF E W  + +  P  +L +F+ TCW+IW+ R
Sbjct: 1028 HALWVCPHVQTAWGKDTGLKGFRKSNFLNFTELWCQVRTLEPPVDLELFSTTCWAIWHRR 1087

Query: 63   NTINQGKPV 72
            N +   +PV
Sbjct: 1088 NKVRLKQPV 1096

BLAST of ClCG08G004630 vs. ExPASy TrEMBL
Match: A0A2N9EXU0 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7256 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 37/150 (24.67%), Postives = 58/150 (38.67%), Query Frame = 0

Query: 3    HVLIKCPRAQLIWSKIYQLPSMDDAYNNNFGERWSTINSSCPKEELNIFAITCWSIWNDR 62
            H L  CP    +W    +L       ++++      + +S     L  FA+TCW +WN R
Sbjct: 1410 HALWSCPVLSQVWQSSNELKDFQKTSHHSYNSLVRQVMNSASPSPLECFAMTCWLLWNKR 1469

Query: 63   NTINQGKPVPIYTSVEW-----ILKYYNSFIHASKDE---YSGRTWK------------- 122
            N      P   Y+S+ W     +L  Y S I+  K E   +    WK             
Sbjct: 1470 NKSRLQLPSEEYSSI-WSRAPTLLYEYTSVINTEKVETPQHPPVKWKPPSHQPYKANFDG 1529

Query: 123  ---EDLTSTGLGASLRDSNGFLLDVFAQAL 129
               +D    GLG  +R+  G ++   +Q L
Sbjct: 1530 AFFKDSNEGGLGVVIRNQGGQVIATLSQKL 1558

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.18.6e-1036.36uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030508852.19.2e-0425.21uncharacterized protein LOC115723496 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX304.2e-1036.36uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9HK894.0e-0532.35Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39966 PE=4 SV=1[more]
A0A2N9GZG34.0e-0532.35Sodium/hydrogen exchanger OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32805 PE=3 SV=... [more]
A0A2N9FQ021.2e-0434.78Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9EXU01.5e-0424.67Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G004630.1ClCG08G004630.1mRNA