ClCG06G016770 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G016770
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LIM domain-containing protein WLIM1-like
Location	CG_Chr06: 29924078 .. 29933864 (+)
RNA-Seq Expression	ClCG06G016770
Synteny	ClCG06G016770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGCATTTCTTCCCTCTTCTTCCTTCTCGCATTCCGTCTCCTGAACAATGGCGTTTTTCCTCAACAAAACCACTCTTGCCTCTCATTTCCGATCTCAATCCCAGGTTCTTTCTTCCTCAATCGCCTCTTTCTTTATCGTTCTTTCCTTCTTTCACTCAATCTTTTGAGCTTTTGGTTGATCCATAGGTGGATCCTTCGTCACTCTCGCGCCGTGGATTCCACATCGAACCAGGGACTCGTGAAAAGGCTGTAAGTATATCCAACTTCTTGAATTTTTCTACATTGTAGCGGTTTATTTCATCGTTTGGATTATTACTTCCTTGTATAGCTCACAGCAGCTCCATTAAGTTAATTGATATTTCATATGATTGTCTACTTAGTTCCTTTCGCTTTCTTGTATCGGAATCTTTCGACGCCAGTATAGATGGAACCTTTCCGAAGCTGTTCAGATCAAACTGCTTGAACTTCTGTATTCAGGCCCATGAAATTAACGGCTGCTGTTTTCTACACTAATCTGTTACCATGCCATGGCATGAAACCTTGGTTAAATTCGTTAAATTCGTTAAATTTCTTATATTGGTGAATATTACGGGTTTTCTTTGCATACGTGTTCTCAAACTCCGCTAGTATAAATTCTAGAGCGATAGGAACTGTTTTCGAAAATATGTATTCCTTGCATTTCGCGAAGGACTTTACTCTACATGTGGATTAGTTAACACGTCTACCAAATTTTTGGTTCACCTCTTGTATTTTGTTGATGCAGTTTGGTTGGTGTATATGTGATTGCAATGATTTATTGTTGCATTGAGTTTTACTATGTTGAATTTCTGGCAGTTATTAGCTGAGGACCCTTCTCTAAGCCGGTTTAGATCACACAAGAAAGATGTCTCTCGACTCAAAAGAATTGGAGATGTTCTGACAATTGTGGTGGTTGCAGGTATTAGTCCTTTTTTCTCTCATTAAATAAAAAACTTTTCTCTTTGTCCCGTGGGTTCCTAGCTCTGCTATTTGCTATTATAGCAACGTTGATGTAAATGGTGTGTGTGGATGAATCTTTTGGATGGTGTATGTCCCTATGCCATTACAAGAATGTCAAATCTTTACGAGCTTCTTAGAAGTGAAAATTGGCTTCAGGCATTTTGAATGAAAACAAGCATATGCAGTATGCTTTTTTATTTTGGTTAATTCTTATTAATACGTTAGATGAAAAGTATCTTAGGTGAACTTAGAAGGTAGAAATAATACTACTGAAATGGAGGAATGGGGTAGCAGCTTATGGTGTGTTTTTAGTAGTCTTGTCGGATGTCAGTTATCAATGACTGGAAAAGAAGGAACTTGAGATTCAAATTTAGAACAAAATGGTATTTGATTAAATAAACGCTGATGTCTAAGTTGATTGAAATTTTGGATTTTCTTATAGGAATTTGTACTGATATGTGAATTTTGGAGATAGATTTCATTTAATACTACCGTTTGTACAAATTTGCCATGATGGCCAAACCGGGTTCAGGTTCCCTAATCTTAGGATAGTAGTAACTGCCAGATTATTTTTAGTGTCGTTTAGACTTTAGTGGCATTATCCACATAAGTTCTATCTATAGACGTTGAAGGTCATACAGCTAGCTAACGACGGGTGGATTGAAAGACTAGGTAGCTATTTTTCCTGTTTTTTAAGTATTCTGATTTTACTTTGTCGTAGTCATTGGATCAAGCAGTAAGGACATGTACAGGTTACTTATTTTCTTCACAATTTTGTTTCTCTTTACAAAAATGTTTGCGTTGAATGATACTCACGAGTTTTAATAAATAGTTAGATTTTTTCATCAACAAGGATAAAAGGTTAAAATTATCAATGACCCCTTCAATTTTTTGATGTCAAGATAATAATTTGGCCATTGCACACTGTATAAAAATGGCACAATGACCTTAGCGACCATTTCATGACCTTAGGGGTTGATGTGATACTGCCTTTTGAACTTAATAAATAGAAGGATGCCAAAAATGACTGACCCTCCCTCGTAGTCCCTGCACCCTTTCCCTGTTTCTTTTCCCTTTCCTCTTCTTCATCTTCTATCTCCTTGACTTTTGGCTAATCTCAAAGTACCAAGAAATGTTGTACTTTTATTGCCTAAAAAGTAGAAGAGGAAGAATACAATAAAAATCTTCAATACATTATAACAAACAAGATAAGAATCTCGTAAAACTCTCCTTAAAAAGAAGAGCCAAAGAAAACACTCTTCCAGACAATGTTCATCTGAGCAAGTCTTCAAAAGATTCTTCTCTTCCTTTCTTCCTAGTTCCCTTAATTCTCAACAAATTGCTGAAACCTGAATAACCATAATGAATATGATCCTGGTTGCCAATGATGCCGACTGTACCCATATAACTTGGGGTAAGCACTCCTCAATAATTCTGCAGAACCTTATCAGGTTAAAAATTTACTTCCACCTGAAGTGTTCAAGAGACCAACATCCAGAGACCAAGTAATCTAATCCTCCTCCATCGAGTTTTCACCAAGAACTCACCTTAGGATGGAATGTATGTATGTATGTATACATGTAGGTGTATGTATGTATATATGTGTTTCAAGCCAATCATGAGTGTCGATTATTCTGCGAACCTCTGAATTTTATATCATATTCACCAATAAATAGGCAACTCTGTTTACAGAGTTTGATTCGGCAATATTATTACATTAATTGAAGTTGATATTAGCTTCCAGCCTCCAAATGCTAGAGCCCTCATCTCCCAAAACATTAATCTCTTTACTTATATTCAGCAAGGATGCCAACAATGCTTCTCCATCATTCTAATTCCTCCGAAAATGGCAATTCAAATTAGTTGAAAATGAACATTTTAACGGTAAGTGTTCCAACAATGAACATTTTCTTTATCATTCTAATTCCAACCATGCTTCTCTATCATGCCAACCATGCTTCTCTGTCATTCTCTATCATGATGCCACAACACATCTTTGATTTTTTTTTTTTTATTCTTTTTTTTGGCTGTTTCTATTTTCCGAGCTCTCCGATGGTCATCAGAAGTTTTTTTTCCTTCTTTGTTTAATTTCTGCAATGTTACCATTAACCATGTTATAAGAAATAAAATCATTCATTATCAAAAGGATGTACAAAAAGATGGGAGAGATGGGATATATCCTAAAGGTAAGAAAGAATAGGATTAGTTGGGTAACATTCTAGGTTAATTCGCCTTTTACCCCACTTATAAAAACTCTAAAATATGAGCTCCCCTCTTGTATGAAATACGTTATCATTCTAATAAAAGATTCACAAGTTCGATTCTTGGAAGATTATTCCTTGAGGCTACTTAGGCTACACTATATTCACACACCAAGTATCCGTGCAGCTTGGCCATTGGATTGAATCAAGAACAAAGTCGTCTTTTCCATGGAGAGACTATTGATTATAATTTTAATTTATCAGTATGTAATATGTTCAAAATAGGATGGTGCTTCCAGTTCTTCCCGAAAATATTTTGGTTGAGAGAATGTAAGACCTACAGCCTTCCCTTTGGTCGAAATCTTACAAATGTTTTGAGAATTTATCCTCGGAAGGCCATCTCTTTGTATCTCTTTCATCTCCTCTCAAATGACTTTTCTGCGTTTCTTATTCCCCCACCCCAAAAATAGATAAATCTCTTTTGACAATTTGTGGGTGAGAGAATTGAACATCTGGCCTCGAGTTTGATAGTACATATTTGACATCGGGTTGAGTGGCTCTAAAATAAATAAATCTTTGATCTTTCTCGTTATATTTTTCAGGATGTTGCTATGAAATCTATGTGAAAGCAACCATGCGAGAAGAAGCTCGGCAGGCAAAGACAACTAGCGGAAGTACATGATGGAATTTGTATCAAGTGGCCATTAAAATGTCTGGCAAAAGTCTTTTAATGCTTTCATTTGTTGCTAAATAAAGGTTTTTGAAGCACCAAGTTCTATTTGCCCAATTTCTGGTAGGTTTTAATCGTCAATAATCTTTTTTTGTACCCTTTCATTTTGTAACATCAGAGTACATTTCTATCGTTATGAGCACCTTTTATGAAGCTTACATTGCCTGCTTTTAAGCTTGAAATGGAACTTACATGGTGGGGGAAAATATGGGATTTTTAACCCTCATGAGTTTGCTTAGTAACCATCATGGATTGGTCTAATGGTAAAAAAAATAAGTCAAGAGTTCAAGTGTCATAGGTTAAATCCATGGTGACCACCTACCTAGGATGTAATATCTTACGGGGTCCCTTGACACCCAAATGTTGTAGGGTCAAGTGGGTTGTCCCGTGAGATTCGTGAGATTAGTCGAGGTGTGCGTAAGTACTCTTACTGAAGCCACCTAATTTAGAGAAATTGCAAGGAATCCATAAAATTGGATATTCACTTTTATTTTTTAAATTGCAAGTTTGGCCCCAATAGTTTGAAAAAAGTTGGTTTGTAATTAGAATTTAATTAAACTATAGTTTTTATCAAATCGTAGGGACTATTTATGAAATTTTATTAAACTATTGGAACTAAATTCTAAATTTTAATTTTTAAAATTATAGGGACTAAATTCTAACTTTCTCAAAATTGTAAGGACTAAATTTGTAATTTAACTACTCTTACTTTTATTTATCATTTATTATGTTGTTAAAAATAATTTATTTGAATTTTTATTAGTGTAGATTTATATTTAGTAATATTTTTTTTCATTTTATTAAATTCGATTAGGTTTAAATTTATAGAATTTATCTGGGTTGGAGATTCTATTTAAACATTCTGTATCAGCTTTTTTTTTCTTTTTTTTTTTTTTACCTAAATTTATTCGTTTAGCTATTTTTCTAGGGAATAAGACCCCCTTAGTTTAGCTATAAGAATTAGGACGATTTTTTCATTAAGTTTTTCCTAAACCTCAGTTTTATTTTCCATGTGGCTGAAATTGTTCGAGGAGAAAGATGATTTAACCTGAAATTGATATTAAAATTCATATTTTAAAAAAATAAATTTAAATTGATTCATGATTTGTTTACACGAGTGAGTTTTGAAACTAGTTTATTGTTATATTTTGTTTTTCAATACTACAAAATAATAATAATAATAATAAATAAATAAATAAATAAATAAATAAGCATGGTAGAGCAATGAACACGGTAATGTAATCAATATGGAGTACTGGTCCACTACATTAGCAGTAACACCCACATGAATGAAGAAAAATAAAAATAAATGGGAAATACAAGTAAGATTGGCTGGTGCTTTATTATTGACATGATTTGAAGTATAAATAATGTCCAATACCTAACTCTTGGCAAGCTAGAAAGATGCTTTTAGTTTATTTATTTGTTTGGTATTATTATTAAAATTCATGTATATACTCAGTGGATTAGGTGATTTTCCTTTTTTATAAAACTTTTTAAACAAAAGAGAAAGAGAATAATTCAAATTTAATGTAGTCTTATTCATATTGGTGAGAACAACAAGGATGGTGGGTGGGACAAATCAATTCAATTGTTATTCCAAGTCGGCTCCTAAAAAGAAGAATGAGAAAAGATGTAAAGCTAAATTCAAAAGAAAAAAAAAAAAAAAACCCATCAAAACAAACATAGCATTTAAAGTCCTCTATTTTCACTTTAAAACGTGGAAAAATTATTATAAATAGAAGAAATATCAAATTATTTATAGGTATAAAAAGATTTTACAGGTTATCAGTGATAGACTTCTATTGTTGTCTATTGTTAATAGACAATAAAAATTTTCTATATTTGTATTACTATATTTGAAAACATTCTTTAAAATGTTGTGTAAAGAAGAAAAATAGTTTATACTGTAGGACTGTTTTCAAATATAGAGAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTTACTATCTATTTGCAATAGACTTTTATCTGTGTTTATTTGTATCATGATAGACAGAGATAGTAGTCTATAGCGAATAGACTGTGATATTTTGCTATTCTTTATAAATATTTTATATGTTTTGTCATTTAAAATAATTTTCCTATATTGTAGAGTAAATGATGAAGAAAAAAAAGACTTTTATAGCCAAGAACTAAAGCAGATTATTAGTAAAAACATCTATATGATAAGTTTAAAATAAGCGAAATTAATTTCAACCAGAGATAAAGGTGCACAATCAAAAGAGATGAAAAAACACTAACAAAGAAGATAATCATGACACGATATTTTCTAAGTAAATTTTAATTTATAAAGTAAAATATCTTAATGAGAAAAAAAAACCTATAAATTGATTGAATTTTCTACTTATTTTTTTATTTTTTTGTCAAGAAACGATTCGACAAGCGAGAGAAAAGATTTAAATTCAAACCATCATAGGTTGGCCTAGTGCTGAAAAAGGAGCATAGTGTCAATAATTGGCTAAGAGGGCATGAGTTCAATCCATGATAATCACTAACCTATGATTTAATATTCTACGAGTTTCTGTAACACTCAAACGTAAGTTGGTCGGAACATTCACGAATATTAAATAATAATAAATAAAGAATAATAAAAAAAAAAAAGAGTTATAAATTCAATGGACAAGATGTTGAATTTGACACTTTGTGTTTTTGCATATAATAATTAGTTTGAAGATGCCATGTATACTCTCTAAAATTTGTTGTATATGCATTTCTTATCTGTCACACATTTGCTTACTCAAAAGACATGGAAATTTTTTTATTAAAAAATTCTCATCTTCCATCATAACTTTGATTGATTTATTCTACAGATCATCTCTCAACTTTGTAACTGAGCTGACCATTTCTCATTAAAATAAACTTGGTTCTGTTACTTCCATACATAACGTTTATACTAATTAAATTGCTTTAAAACCCAACATTTAATCCACTTCTTGGTCCATAATTCTCACTTTCTATGAGCAAATAAAAGAGATGACACGTGTAAAATGTAGAAATTAAGTTGGTCAAGATTTCAAATTTGCTTGAATCTGCCTGAGCTGTAATCTCTGACTTGGAATTTTTCATTGACTGAGAGATGAAATTTTGCTGAATTTTGAGACAACATAAAAAGGGCAAAGGAAAGATCTTCTGTTTCTTCTTTCCCTTCCCTTCTTCTCAGCTTTCATACTTCAGTTCTCTTCTTTTCTTTTCTGTTCATATTCTTCTTTGAATCCTTCAGATTTATGAAGATGGCTTTTTTAGGAACAACCCAAAAGTGCAAAGCTTGTGACAAGACTGTTTACTTGGTTGATCAACTCACTGCTGATAACAAAGTTTACCACAAAGCTTGTTTCAGATGCCACCATTGCAACAGCACTCTAAAGGTACCTCTTTTTGAATCTTCCCTTCTTCTTCTTCATCTATAAACAGATATATTTCATTCTTAAAGGTTTCTTGTGTTAAGAAATCAACCATCAAACATAAACAGAAAAACGTAGACAATAGAGAATCAGATTTACGTAGTTCTCTAACCGTGTGTTAATTATGTCCACGGACAGAGAGAGAGGAGTTTGTAGACACTAGCTAGTAGAGTTAAAGAGTTTATGTCTAGACCTTGTTATTGGTCATTTGGAATGCCAGATAACAAATTCAAGGCATTCCAACATCCAATTGATAGAGTTTGAAAGTGAGATAAAAAGGAATCTTCGTTGATTTCTGATGATTTGTCAATTATGACTATATAGACTTTGTGAAATTGAATAGAATAGATGCATGTCTGTTCAAGATATGTCTATTTCAAGATCCTATTTTCCATTCTGTCTATGACTAATGGAAGTCCCTTTGTTGGAATGCTTCTAGTATTGTAGTTTTGGCTAAAATGTTCCTGAAGTTGCTTTCATAATGAATTTGAATGGTTCCCATATCTCAAAAGGGTCTGATTTCTCGAGCATGTAATTGTATGTTTCCCGAGTCGAAATTTATCCGACAAGGACTTTTGTTAACTTAGATTTTGTGTGCGTTAAGATCATGCTTGTTGGTGTATTAGAACTCAAGAACACAGTTGTACAACCTATAGAATAGATACGGTTCAAGTACGGTTGTGCTTGTTGGTGCATTGGGATCATCATTTCTCTCTTAAGTTCAATAACACGACAGACTTAACACGAGAGAGTGGAGATTTGAACCTCCAATCTCTTGGTCCATATATCTTAACCAGTTGAACTATATTTAGGTTGGCATTATATCTATAATTTAGAAATGTTATCTCCATTATTATTATTGTTCTTATTATTTTCCTGTCATTGCAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTGTATTGCAAACCTCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTAGAAAAAAGTTTTGAAGGTAATTGGCAGTTGTTCAATATTTTTCCTCCTTTTAATGGCTTCTGCTTGTTTAGTCTATAACTTTCTTCTTTCTTTTTCTTTAGGTACTCCAAGAACCCTTAGAACAGACAGATCTACCAATCAGGTTTTTTCTTGGCTTTTTTCGTTTTTCGAAGTTTGTCTGTTAAAATCAATACTATTGATTTGGTACCTAACTATTTGATGTTGTTATTAACACATGAAAGTTAAATTTGACTTATATTTGAAGGTCCAATCCAACAGCAAAGTGTCAAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTAAATAAATGGCCATTATGCGGTTTAAAAGTCTCTAGTTTTTTACTTGCTTCCAATGTCTATGTTATGAATCATTCACTCAAGTTTCTTTTTCCTGTTTTTCTTGAGAGGATCAAAATTTTTACCATGGAAATGTGGATTGGTGCAAGAAATTTCCATAACACTATATTCCAACTTGAAACAATATGATACATTTGGAAGTTACAAATTGGGAAGGATAGTTGAATGGTGGCTTAGAATACCTTTCTTTTCGCCCCTCCGTGTATTGCGTGCGAGAGAGAGGAAGGTTTCAATTATTCGTCGAGAGAAAGTATACAAGTGGCAAGAAGTTCCTTTACAAGTTCACAACTCCCTACTATCCCAATTCACCTTCCTCACTCTCTTTCCATTATAAGTCAAACTAATGAAAAGGCACTTGATCCTATCAAAATCCTATATAAACATAGATTTGTTTCCTTGATCTAAAACCAGTTTGTTCTTTCAATATAACGTGAGGATTTGAACTTCTGATCTTTTGATCGATGATATAGTGTCCCCACCAGTTGACCACTGCTAAAACTAGTTTGCTAAACTGAAAACATGTCGTTTTCTTTTTTCGTTTCAGGTGGCAGTGGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCGAACTACATAGCGCACGAACATCGACTCTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAAGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGAAGTGACTAAGAACACAGCAGTTGAGAAGAACTGGCTGCGAATGCAACTGTTAGATCGTGCTCGAGGAGCTGATAAAGTTACAATTTTCTTGGATACTTACGGATTCGAGTTTGCTATTTTACAGAGTGTACTATAAGAGAAATTTGAGCTTCAATAAATTTTTTGAGTGTGAGCTGAAATATGAGATGTATTGTTATTCAATTCAAATGAAACTATAAGCTGTTTTCATCATTTCATTGATGAGTTGTCTATTTTTGTTATATGTGGAGTGTTTGTTTTGTTTGATGAACATTTTGTTTAATATGGTTGACCAAACATTACATGACATTCAAACTTG

mRNA sequence

ACCGCATTTCTTCCCTCTTCTTCCTTCTCGCATTCCGTCTCCTGAACAATGGCGTTTTTCCTCAACAAAACCACTCTTGCCTCTCATTTCCGATCTCAATCCCAGGTGGATCCTTCGTCACTCTCGCGCCGTGGATTCCACATCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGCCGGTTTAGATCACACAAGAAAGATGTCTCTCGACTCAAAAGAATTGGAGATGTTCTGACAATTGTGGTGGTTGCAGTCATTGGATCAAGCAGTAAGGACATGTACAGATTTATGAAGATGGCTTTTTTAGGAACAACCCAAAAGTGCAAAGCTTGTGACAAGACTGTTTACTTGGTTGATCAACTCACTGCTGATAACAAAGTTTACCACAAAGCTTGTTTCAGATGCCACCATTGCAACAGCACTCTAAAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTGTATTGCAAACCTCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTAGAAAAAAGTTTTGAAGGTACTCCAAGAACCCTTAGAACAGACAGATCTACCAATCAGGTCCAATCCAACAGCAAAGTGTCAAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTGGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCGAACTACATAGCGCACGAACATCGACTCTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAAGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGAAGTGACTAAGAACACAGCAGTTGAGAAGAACTGGCTGCGAATGCAACTGTTAGATCGTGCTCGAGGAGCTGATAAAGTTACAATTTTCTTGGATACTTACGGATTCGAGTTTGCTATTTTACAGAGTGTACTATAAGAGAAATTTGAGCTTCAATAAATTTTTTGAGTGTGAGCTGAAATATGAGATGTATTGTTATTCAATTCAAATGAAACTATAAGCTGTTTTCATCATTTCATTGATGAGTTGTCTATTTTTGTTATATGTGGAGTGTTTGTTTTGTTTGATGAACATTTTGTTTAATATGGTTGACCAAACATTACATGACATTCAAACTTG

Coding sequence (CDS)

ATGGCGTTTTTCCTCAACAAAACCACTCTTGCCTCTCATTTCCGATCTCAATCCCAGGTGGATCCTTCGTCACTCTCGCGCCGTGGATTCCACATCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGCCGGTTTAGATCACACAAGAAAGATGTCTCTCGACTCAAAAGAATTGGAGATGTTCTGACAATTGTGGTGGTTGCAGTCATTGGATCAAGCAGTAAGGACATGTACAGATTTATGAAGATGGCTTTTTTAGGAACAACCCAAAAGTGCAAAGCTTGTGACAAGACTGTTTACTTGGTTGATCAACTCACTGCTGATAACAAAGTTTACCACAAAGCTTGTTTCAGATGCCACCATTGCAACAGCACTCTAAAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTGTATTGCAAACCTCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTAGAAAAAAGTTTTGAAGGTACTCCAAGAACCCTTAGAACAGACAGATCTACCAATCAGGTCCAATCCAACAGCAAAGTGTCAAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTGGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCGAACTACATAGCGCACGAACATCGACTCTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAAGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGAAGTGACTAA

Protein sequence

MAFFLNKTTLASHFRSQSQVDPSSLSRRGFHIEPGTREKALLAEDPSLSRFRSHKKDVSRLKRIGDVLTIVVVAVIGSSSKDMYRFMKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD

Homology

[Close]

BLAST of ClCG06G016770 vs. NCBI nr
Match: KAG6589465.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 491.9 bits (1265), Expect = 3.6e-135
Identity = 242/278 (87.05%), Postives = 255/278 (91.73%), Query Frame = 0


Query: 1   MAFFLNKTTLASHFRSQSQVDPSSLSRRGFHIEPGTREKALLAEDPSLSRFRSHKKDVSR 60
           MAF L KT+LASHFRSQSQVDPSS SRRGFH+EPGTREKALLAEDPSL RFRSHKK V+R
Sbjct: 1   MAFLLTKTSLASHFRSQSQVDPSSPSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVAR 60

Query: 61  LKRIGDVLTIVVVA------VIGSSSKDMYRFMKMAFLGTTQKCKACDKTVYLVDQLTAD 120
           +K+IGDVLTIVVVA       + ++ ++  R  K A   TTQKCKACDKTVYLVDQLTAD
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASERTTQKCKACDKTVYLVDQLTAD 120

Query: 121 NKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTLRTD 180
           NK+YHKACFRC+HC STLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRT+RTD
Sbjct: 121 NKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTIRTD 180

Query: 181 RSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPS 240
           RSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPS
Sbjct: 181 RSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPS 240

Query: 241 NYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD 273
           NYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD
Sbjct: 241 NYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD 278

[Close]

BLAST of ClCG06G016770 vs. NCBI nr
Match: KAF9667830.1 (hypothetical protein SADUNF_Sadunf15G0064100 [Salix dunnii])

HSP 1 Score: 402.1 bits (1032), Expect = 3.7e-108
Identity = 201/276 (72.83%), Postives = 229/276 (82.97%), Query Frame = 0


Query: 1   MAFFLN--KTTLASHFRSQSQ--VDPSSLSRRGFHIEPGTREKALLAEDPSLSRFRSHKK 60
           MAF L    ++++SHFRS+SQ   D  S+SRRGFH+EPG REKALLA DP+L  F+SHKK
Sbjct: 41  MAFLLKNCSSSISSHFRSKSQKTQDALSISRRGFHVEPGPREKALLAADPALKWFKSHKK 100

Query: 61  DVSRLKRIGDVLTIVVVA------VIGSSSKDMYRFMKMAFLGTTQKCKACDKTVYLVDQ 120
            V RLKR GDVLTI+VVA       + +  ++  R  K A   TTQKCKAC+KTVYLVDQ
Sbjct: 101 SVWRLKRAGDVLTILVVAGCCYEIYVKAVMREEAR--KEAKKRTTQKCKACEKTVYLVDQ 160

Query: 121 LTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRT 180
           LTAD+KVYHKACFRCHHC  TLKL NYSSFEGVLYCKPHFDQLFKMTGSL+KSFEGT +T
Sbjct: 161 LTADDKVYHKACFRCHHCKGTLKLSNYSSFEGVLYCKPHFDQLFKMTGSLDKSFEGTRKT 220

Query: 181 LRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCV 240
           +R DRS +QV  NSKVSS+FAGTQ+KCV CKKTVYPIEKVAVD  SYHRACFRC+HGGC+
Sbjct: 221 VRGDRSADQVLGNSKVSSMFAGTQEKCVACKKTVYPIEKVAVDGTSYHRACFRCAHGGCI 280

Query: 241 ISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 267
           ISPSN++AH+HRLYCRHHHNQLFK+KGNFSQL KHE
Sbjct: 281 ISPSNFVAHDHRLYCRHHHNQLFKEKGNFSQLGKHE 314

[Close]

BLAST of ClCG06G016770 vs. NCBI nr
Match: PQM43126.1 (hypothetical protein Pyn_23032 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 401.0 bits (1029), Expect = 8.3e-108
Identity = 201/276 (72.83%), Postives = 228/276 (82.61%), Query Frame = 0


Query: 4   FLNKTTLASHFRSQS---QVDPSSLSRRGFHIEPGTREKALLAEDPSLSRFRSHKKDVSR 63
           FL + ++ SHF+S S   Q D  S SRR FH+EPG REKALLAEDPSL RF+SHKK V+R
Sbjct: 3   FLLRNSITSHFQSHSQRAQNDSLSQSRRQFHVEPGPREKALLAEDPSLKRFKSHKKGVAR 62

Query: 64  LKRIGDVLTIVVVA------VIGSSSKDMYRFMKMAFLGTTQKCKACDKTVYLVDQLTAD 123
           +KR+GDVLT+VVVA       + +  ++  R  +    GTTQKCKAC+KTVYLVDQLTAD
Sbjct: 63  IKRLGDVLTVVVVASCCYEIYVRAVMREEAR-KQAGASGTTQKCKACEKTVYLVDQLTAD 122

Query: 124 NKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTLRTD 183
           NKVYHKACFRCHHC  TLKL NYSSFEGVLYCKPHFDQLFKMTGSL+KSFEG P+T+R D
Sbjct: 123 NKVYHKACFRCHHCKGTLKLSNYSSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPKTVR-D 182

Query: 184 RSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPS 243
           RS  +  +NSKVSSLFAGTQDKCV CKKTVYPIEKVAVD  SYH+ CFRCSHGGCVISPS
Sbjct: 183 RS--EQVNNSKVSSLFAGTQDKCVACKKTVYPIEKVAVDGTSYHKPCFRCSHGGCVISPS 242

Query: 244 NYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKG 271
           NY+AHEHRLYCRHHH+QLFK+KGNFSQL K EE++G
Sbjct: 243 NYVAHEHRLYCRHHHSQLFKEKGNFSQLSKQEEVQG 274

[Close]

BLAST of ClCG06G016770 vs. NCBI nr
Match: KAG5046276.1 (hypothetical protein JHK86_015682 [Glycine max] >KAG5148775.1 hypothetical protein JHK82_015656 [Glycine max])

HSP 1 Score: 391.7 bits (1005), Expect = 5.0e-105
Identity = 198/300 (66.00%), Postives = 230/300 (76.67%), Query Frame = 0


Query: 1   MAFFLNKTTLASHFRSQSQVDP--SSLSRRGFHIEPGTREKALLAEDPSLSRFRSHKKDV 60
           MAF  NKT++ASHFRS SQ     +S  RR FH+EPG REKALLAED +L  F+S+KK V
Sbjct: 1   MAFLWNKTSIASHFRSHSQKTEGLASFPRRRFHVEPGAREKALLAEDATLKPFKSYKKSV 60

Query: 61  SRLKRIGDVLTIVVVA--------VIGSSSKD-------------------MYRFMKMAF 120
            +L++IG+ LT+VVVA         +  + KD                   + + +  A 
Sbjct: 61  KQLRKIGNALTVVVVAGPVCDRVNSVCLALKDAVTKYMSELLQERKLRNCNVLKVLDEAN 120

Query: 121 LG-TTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKPHF 180
           +G TTQKCKAC+KTVYLVDQLTADNK+YHK+CFRC+HC  TLKL NY SFEGVLYCKPHF
Sbjct: 121 IGRTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHF 180

Query: 181 DQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKV 240
           DQLFK TGSL+KSFEG PRT R +RST+QVQ+NSKVS+LFAGTQ+KCV CKKTVYPIEKV
Sbjct: 181 DQLFKKTGSLDKSFEGIPRTARLERSTDQVQTNSKVSNLFAGTQEKCVACKKTVYPIEKV 240

Query: 241 AVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKG 271
           AVD  SYH+ACFRC+HGGCVISPSNY+AHEHRLYCRHHH QLFKQKGNFSQLDK E  +G
Sbjct: 241 AVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENDEG 300

[Close]

BLAST of ClCG06G016770 vs. NCBI nr
Match: XP_038878600.1 (LIM domain-containing protein WLIM1-like [Benincasa hispida])

HSP 1 Score: 391.0 bits (1003), Expect = 8.6e-105
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 87  MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYC 146
           MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHC STLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 147 KPHFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 206
           KPHFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 120

Query: 207 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 266
           IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 267 EIKGSD 273
           EIKGSD
Sbjct: 181 EIKGSD 186

[Close]

BLAST of ClCG06G016770 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-72
Identity = 127/185 (68.65%), Postives = 150/185 (81.08%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           MAF GTTQKC ACDKTVYLVD+LTADN+VYHKACFRCHHC  TLKL NY+SFEGVLYC+P
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRS-TNQVQSNSKVSSLFAGTQDKCVTCKKTVYPI 208
           HFDQ FK TGSLEKSFEGTP+  + DR    +  + +KVS++F GT++KCV C KTVYPI
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 209 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 268
           EKV+V+   YH++CF+C+HGGC ISPSNYIAHE +LYC+HHH QL K+KGN SQL+   E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 269 IKGSD 273
               D
Sbjct: 181 NAAKD 185

[Close]

BLAST of ClCG06G016770 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.2e-70
Identity = 119/179 (66.48%), Postives = 145/179 (81.01%), Query Frame = 0


Query: 90  AFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKPH 149
           +F GTTQKC  C+KTVYLVD+L A+ +VYHKACFRCHHCNSTLKL N++SF+GV+YC+ H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 150 FDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEK 209
           FDQLFK TGSLEKSF+GTP+       + + QS +++SS F GT+DKC  C K VYPIE+
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIER 122

Query: 210 VAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 269
           V VD  +YHRACF+C HGGC ISPSNYIAHE RLYC+HHH QLFK+KGN+SQL+  E +
Sbjct: 123 VKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETV 181

[Close]

BLAST of ClCG06G016770 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.5e-59
Identity = 107/182 (58.79%), Postives = 141/182 (77.47%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           M+F GT QKC+AC+KTVY V+ L+AD   YHKACF+C HC S L+L NYSS EGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 208
           HF+QLFK +GS  K+F+   + L TD+ T ++ ++ S+++ +F+GTQDKC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 209 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 268
           EKV V+S+ YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 269 IK 270
           IK
Sbjct: 181 IK 181

[Close]

BLAST of ClCG06G016770 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.3e-59
Identity = 108/184 (58.70%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HC S L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 208
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 209 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 268
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 269 IKGS 272
           IK S
Sbjct: 181 IKRS 182

[Close]

BLAST of ClCG06G016770 vs. ExPASy Swiss-Prot
Match: Q500W4 (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.1e-53
Identity = 91/173 (52.60%), Postives = 130/173 (75.14%), Query Frame = 0


Query: 90  AFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKPH 149
           AF GTT KCKACDKTVY++D +T +   YHK+CFRC HCN TL + NYSS +GVLYCK H
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 150 FDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEK 209
           F+QLFK +G+  K+F+      +T++S +  ++ +++SS F+GTQDKC  CKKTVYP+EK
Sbjct: 63  FEQLFKESGNFSKNFQTAG---KTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEK 122

Query: 210 VAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQL 263
           + ++ +SYH+ CFRC+H GC ++ S+Y A +  LYC+ H +QLF +KGN++ +
Sbjct: 123 MTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHV 172

[Close]

BLAST of ClCG06G016770 vs. ExPASy TrEMBL
Match: A0A314V1K9 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23032 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 4.0e-108
Identity = 201/276 (72.83%), Postives = 228/276 (82.61%), Query Frame = 0


Query: 4   FLNKTTLASHFRSQS---QVDPSSLSRRGFHIEPGTREKALLAEDPSLSRFRSHKKDVSR 63
           FL + ++ SHF+S S   Q D  S SRR FH+EPG REKALLAEDPSL RF+SHKK V+R
Sbjct: 3   FLLRNSITSHFQSHSQRAQNDSLSQSRRQFHVEPGPREKALLAEDPSLKRFKSHKKGVAR 62

Query: 64  LKRIGDVLTIVVVA------VIGSSSKDMYRFMKMAFLGTTQKCKACDKTVYLVDQLTAD 123
           +KR+GDVLT+VVVA       + +  ++  R  +    GTTQKCKAC+KTVYLVDQLTAD
Sbjct: 63  IKRLGDVLTVVVVASCCYEIYVRAVMREEAR-KQAGASGTTQKCKACEKTVYLVDQLTAD 122

Query: 124 NKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTLRTD 183
           NKVYHKACFRCHHC  TLKL NYSSFEGVLYCKPHFDQLFKMTGSL+KSFEG P+T+R D
Sbjct: 123 NKVYHKACFRCHHCKGTLKLSNYSSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPKTVR-D 182

Query: 184 RSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPS 243
           RS  +  +NSKVSSLFAGTQDKCV CKKTVYPIEKVAVD  SYH+ CFRCSHGGCVISPS
Sbjct: 183 RS--EQVNNSKVSSLFAGTQDKCVACKKTVYPIEKVAVDGTSYHKPCFRCSHGGCVISPS 242

Query: 244 NYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKG 271
           NY+AHEHRLYCRHHH+QLFK+KGNFSQL K EE++G
Sbjct: 243 NYVAHEHRLYCRHHHSQLFKEKGNFSQLSKQEEVQG 274

[Close]

BLAST of ClCG06G016770 vs. ExPASy TrEMBL
Match: A0A0A0LNY7 (Pollen-specific protein SF3 OS=Cucumis sativus OX=3659 GN=Csa_1G005660 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.3e-103
Identity = 181/186 (97.31%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 87  MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYC 146
           MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHC STLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 147 KPHFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 206
           KPHFDQLFKMTGSLEKSFE TPRT+RTDRSTNQVQ+NSK+SSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEATPRTVRTDRSTNQVQTNSKLSSLFAGTQDKCVTCKKTVYP 120

Query: 207 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 266
           IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 267 EIKGSD 273
           EIKGSD
Sbjct: 181 EIKGSD 186

[Close]

BLAST of ClCG06G016770 vs. ExPASy TrEMBL
Match: A0A1S3BVF2 (LIM domain-containing protein WLIM1-like OS=Cucumis melo OX=3656 GN=LOC103493931 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 5.1e-103
Identity = 181/186 (97.31%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 87  MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYC 146
           MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHC STLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 147 KPHFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 206
           KPHFDQLFKMTGSLEKSFEGTPRT+RTDRSTNQVQ+NSK+SSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEGTPRTVRTDRSTNQVQTNSKLSSLFAGTQDKCVTCKKTVYP 120

Query: 207 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 266
           IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 267 EIKGSD 273
           EIK SD
Sbjct: 181 EIKVSD 186

[Close]

BLAST of ClCG06G016770 vs. ExPASy TrEMBL
Match: A0A6J1JLG7 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111485663 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 6.6e-103
Identity = 180/184 (97.83%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           MAFLGTTQKCKACDKTVYLVDQLTADNK+YHKACFRC+HC STLKLFNYSSFEGVLYCKP
Sbjct: 1   MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 208
           HFDQLFKMTGSLEKSFEGTPRT+RTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE
Sbjct: 61  HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 120

Query: 209 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 268
           KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI
Sbjct: 121 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 180

Query: 269 KGSD 273
           KGSD
Sbjct: 181 KGSD 184

[Close]

BLAST of ClCG06G016770 vs. ExPASy TrEMBL
Match: A0A6J1E4K3 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111429864 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 6.6e-103
Identity = 180/184 (97.83%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           MAFLGTTQKCKACDKTVYLVDQLTADNK+YHKACFRC+HC STLKLFNYSSFEGVLYCKP
Sbjct: 1   MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 208
           HFDQLFKMTGSLEKSFEGTPRT+RTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE
Sbjct: 61  HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 120

Query: 209 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 268
           KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI
Sbjct: 121 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 180

Query: 269 KGSD 273
           KGSD
Sbjct: 181 KGSD 184

[Close]

BLAST of ClCG06G016770 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-73
Identity = 127/185 (68.65%), Postives = 150/185 (81.08%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           MAF GTTQKC ACDKTVYLVD+LTADN+VYHKACFRCHHC  TLKL NY+SFEGVLYC+P
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRS-TNQVQSNSKVSSLFAGTQDKCVTCKKTVYPI 208
           HFDQ FK TGSLEKSFEGTP+  + DR    +  + +KVS++F GT++KCV C KTVYPI
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 209 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 268
           EKV+V+   YH++CF+C+HGGC ISPSNYIAHE +LYC+HHH QL K+KGN SQL+   E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 269 IKGSD 273
               D
Sbjct: 181 NAAKD 185

[Close]

BLAST of ClCG06G016770 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-60
Identity = 107/182 (58.79%), Postives = 141/182 (77.47%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           M+F GT QKC+AC+KTVY V+ L+AD   YHKACF+C HC S L+L NYSS EGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 208
           HF+QLFK +GS  K+F+   + L TD+ T ++ ++ S+++ +F+GTQDKC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 209 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 268
           EKV V+S+ YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 269 IK 270
           IK
Sbjct: 181 IK 181

[Close]

BLAST of ClCG06G016770 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 229.6 bits (584), Expect = 3.1e-60
Identity = 108/184 (58.70%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HC S L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 208
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 209 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 268
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 269 IKGS 272
           IK S
Sbjct: 181 IKRS 182

[Close]

BLAST of ClCG06G016770 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 229.6 bits (584), Expect = 3.1e-60
Identity = 108/184 (58.70%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HC S L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 208
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 209 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 268
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 269 IKGS 272
           IK S
Sbjct: 181 IKRS 182

[Close]

BLAST of ClCG06G016770 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 229.6 bits (584), Expect = 3.1e-60
Identity = 108/184 (58.70%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 89  MAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCNSTLKLFNYSSFEGVLYCKP 148
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HC S L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 149 HFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 208
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 209 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 268
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 269 IKGS 272
           IK S
Sbjct: 181 IKRS 182

The following BLAST results are available for this feature:

BLAST of ClCG06G016770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589465.1	3.6e-135	87.05	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAF9667830.1	3.7e-108	72.83	hypothetical protein SADUNF_Sadunf15G0064100 [Salix dunnii]	[more]
PQM43126.1	8.3e-108	72.83	hypothetical protein Pyn_23032 [Prunus yedoensis var. nudiflora]	[more]
KAG5046276.1	5.0e-105	66.00	hypothetical protein JHK86_015682 [Glycine max] >KAG5148775.1 hypothetical prote...	[more]
XP_038878600.1	8.6e-105	99.46	LIM domain-containing protein WLIM1-like [Benincasa hispida]	[more]

BLAST of ClCG06G016770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	1.5e-72	68.65	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	4.2e-70	66.48	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	2.5e-59	58.79	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	4.3e-59	58.70	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
Q500W4	2.1e-53	52.60	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P...	[more]

BLAST of ClCG06G016770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A314V1K9	4.0e-108	72.83	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_230...	[more]
A0A0A0LNY7	2.3e-103	97.31	Pollen-specific protein SF3 OS=Cucumis sativus OX=3659 GN=Csa_1G005660 PE=4 SV=1	[more]
A0A1S3BVF2	5.1e-103	97.31	LIM domain-containing protein WLIM1-like OS=Cucumis melo OX=3656 GN=LOC103493931...	[more]
A0A6J1JLG7	6.6e-103	97.83	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1E4K3	6.6e-103	97.83	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of ClCG06G016770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	1.1e-73	68.65	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	1.8e-60	58.79	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	3.1e-60	58.70	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	3.1e-60	58.70	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	3.1e-60	58.70	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 196..248 e-value: 1.0E-11 score: 55.0 coord: 97..149 e-value: 1.5E-12 score: 57.7
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 197..252 e-value: 6.4E-10 score: 39.1 coord: 98..152 e-value: 2.5E-10 score: 40.4
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 98..132
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 96..156 score: 13.2859
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 195..255 score: 12.0484
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 93..162 e-value: 1.8E-19 score: 71.6 coord: 191..261 e-value: 3.7E-18 score: 67.5
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 90..269
None	No IPR available	PANTHER	PTHR24206:SF63	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 90..269
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 197..257 e-value: 2.31488E-38 score: 127.201
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 94..155 e-value: 6.59575E-40 score: 131.048
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 90..123
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 189..222
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 223..261
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 124..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G016770.2	ClCG06G016770.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding