ClCG06G015810 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G015810
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description50S ribosomal protein L4
LocationCG_Chr06: 29135960 .. 29137932 (-)
RNA-Seq ExpressionClCG06G015810
SyntenyClCG06G015810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGATACAAGTTAAATTACTTAAAAGTGAAAAATGTTTTATTTATTTATTTATTTTAATTTCAAATTTTTTGGTAAAAACGGACGAAAGATGGTATTTTCTTCTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCTATCCGCAGAACTAAGCTCCTCCATCGCACCAACAATGGCGGCCTCCACCACGCCATTGTCGCTCTCTTTCTTCACTTCATCCGTCTTCCTTTCTTCCCCCAACCTCCAAAATTCCAAGCTCTGCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACTAAACCCTTATCAATCTCCTCCGAGCTCGCTACTCTTCCAGTCCTCTCCTTCACTGGAGAAAAAGTCGGTGAAACCTACCTCGACCTAAAATCCGCTCCACCGGAAACCGCCCGCGCTGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGTTTAATACGATAGTGGTGGAGGATTTTGGGGACAAGTTCGAGAAGCCGAAAACTAAAGAATTCATCGCTGCGTTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCATTGTTCTTAATGACGGAGGTTTCTGATAATGTCCGACTATCTAGCCGTAATATTAGAACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGAATCGAAGATGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGTTGATTTTCTTGCCTTTCTCCAATTCAATTATTCAATTAAAGAAATGATAGACTGCTTTAAGAACATACATTATCATTCCATACTTGAATTTTGTCTAGTTCAACATTCAAATCACATTACAGTGCCATCTTCTTATTGAATTCTTGATTTCTTAGATACCCTTTAATGATGGGATTCCTTAGAATTATACTGTGAATTCTGGTTTTGGTTCTGTTTCTATTAACATTTGCGTTGTCATTTTGTATAATCGATTTTCATCCAGATTTCTTACATTCTTCGTTTTGTTTCATTTCTGTAAGAAATCTTAGAGGAGTAATCGAAATGAAAAGCTAATTCAGGATGGATATTTGACTCTCTTCACCATAAAACCTATGTTTTTTTAACATTTTTTAACATTGCTCTTTCTTTCTGCCACCTCCATTGTTTCACATAAAAGAACAATACAGAAATTGTAGGCAGGTTTGGTAACCATTTGGTTTTTCATTTTTACTTTTGGAAAATTGTGGTTATAAACATTATTGTTTATATGTTTTGTTGAACTTTCTTATTCGTGATAAAACGAAAGAGTCTTGTGGCAAGCTTGTTTTTCTGCTATCTTATGGGGAGTGTAGCTTGAGAGGAATAGTAGAGATTGTAGGAGGTTGGAGAAGTCAATTGAAGAAGTGTGGGAGGTGGTGAGGTTTAATGCATCATTACATACGTTCTTTAATCAGACTTTCAGTAACTTTCAATTTTGTGTAATTCTTTTCGATTGGAATCTGTCTTTGAAGTTTGTTGTGGACTCATTTTATAGTCTTACTTTTCGTATGCCCTTCTACATTAACTCGGTTCCTTACCATAAAAATGAACATACTGAAATTAATCGAGAGAGTGATTCTAGTTCTTCCACTAACGTCCTCGTCATTTCTAAAAGCAGGGCCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGA

mRNA sequence

ATGGAAATGGATACAAATGGTATTTTCTTCTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCTATCCGCAGAACTAAGCTCCTCCATCGCACCAACAATGGCGGCCTCCACCACGCCATTGTCGCTCTCTTTCTTCACTTCATCCGTCTTCCTTTCTTCCCCCAACCTCCAAAATTCCAAGCTCTGCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACTAAACCCTTATCAATCTCCTCCGAGCTCGCTACTCTTCCAGTCCTCTCCTTCACTGGAGAAAAAGTCGGTGAAACCTACCTCGACCTAAAATCCGCTCCACCGGAAACCGCCCGCGCTGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGTTTAATACGATAGTGGTGGAGGATTTTGGGGACAAGTTCGAGAAGCCGAAAACTAAAGAATTCATCGCTGCGTTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCATTGTTCTTAATGACGGAGGTTTCTGATAATGTCCGACTATCTAGCCGTAATATTAGAACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGAATCGAAGATGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGGCCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGA

Coding sequence (CDS)

ATGGAAATGGATACAAATGGTATTTTCTTCTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCTATCCGCAGAACTAAGCTCCTCCATCGCACCAACAATGGCGGCCTCCACCACGCCATTGTCGCTCTCTTTCTTCACTTCATCCGTCTTCCTTTCTTCCCCCAACCTCCAAAATTCCAAGCTCTGCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACTAAACCCTTATCAATCTCCTCCGAGCTCGCTACTCTTCCAGTCCTCTCCTTCACTGGAGAAAAAGTCGGTGAAACCTACCTCGACCTAAAATCCGCTCCACCGGAAACCGCCCGCGCTGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGTTTAATACGATAGTGGTGGAGGATTTTGGGGACAAGTTCGAGAAGCCGAAAACTAAAGAATTCATCGCTGCGTTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCATTGTTCTTAATGACGGAGGTTTCTGATAATGTCCGACTATCTAGCCGTAATATTAGAACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGAATCGAAGATGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGGCCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGA

Protein sequence

MEMDTNGIFFFATDLQREWITKLSAELSSSIAPTMAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILDSDKLVLTPAAVEYLNERYGINYEEGIEDEEEEGGEDEEGPEAGEDSDAAE
Homology
[Close]
BLAST of ClCG06G015810 vs. NCBI nr
Match: XP_038902816.1 (50S ribosomal protein L4, chloroplastic [Benincasa hispida])

HSP 1 Score: 515.0 bits (1325), Expect = 4.7e-142
Identity = 277/290 (95.52%), Postives = 278/290 (95.86%), Query Frame = 0 

Query: 35  MAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFT 94
           MA ST+P SLSFFTSSVFLSSPN QNSKL CNWKPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MATSTSPSSLSFFTSSVFLSSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 95  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 154
           GEKVGETYLDLKSAP ETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPQETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 155 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDK 214
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 215 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILD 274
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNI TLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 275 SDKLVLTPAAVEYLNERYGINYEEGIEDEEEEGGEDEEGPEAGEDSDAAE 325
           SDKLVLTPAAVEYLNERYGINYEE    EEEEGG DEEGPEAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVEYLNERYGINYEEA---EEEEGGADEEGPEAGEDSDAAE 287

[Close]
BLAST of ClCG06G015810 vs. NCBI nr
Match: KAE8646954.1 (hypothetical protein Csa_020647 [Cucumis sativus])

HSP 1 Score: 505.8 bits (1301), Expect = 2.9e-139
Identity = 277/320 (86.56%), Postives = 292/320 (91.25%), Query Frame = 0 

Query: 10  FFATDLQREWITK------LSAELSSSIAPTMAASTTPLSLSFFTSSVFLSSPNLQNSKL 69
           +FATDLQR+WIT        ++  SSS APTMA S +P SLSFFTSSVFLSSP+ QN  L
Sbjct: 19  YFATDLQRKWITSDIHREHNTSPRSSSFAPTMATSISPSSLSFFTSSVFLSSPSHQNLNL 78

Query: 70  CCNWKPNSLKPQTKPLSISSELATLPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIIT 129
             N KPNSLKPQTK LSISSELATLPVLSFTG+KVGETYLDLKSAPPETARAVVHRAIIT
Sbjct: 79  FFNSKPNSLKPQTKTLSISSELATLPVLSFTGQKVGETYLDLKSAPPETARAVVHRAIIT 138

Query: 130 DQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSI 189
           DQQNKRRGTASTLTRAEVSGGG+KPY+QKKTG+ARRGSMRTPLRPGGGVVFGPKPRDWSI
Sbjct: 139 DQQNKRRGTASTLTRAEVSGGGKKPYKQKKTGRARRGSMRTPLRPGGGVVFGPKPRDWSI 198

Query: 190 KINRKEKRLAISTAVASAAFNTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMT 249
           KINRKEK+LAISTAVASAA NTIVVE+FGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMT
Sbjct: 199 KINRKEKKLAISTAVASAAVNTIVVEEFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMT 258

Query: 250 EVSDNVRLSSRNIRTLKLLTPRTLNLFDILDSDKLVLTPAAVEYLNERYGINYEEGIEDE 309
           EVSDNVRLSSRNI TLKLLTPRTLNLFDILDSDKLVLTP AV+YLNERYGINYEEGIE+ 
Sbjct: 259 EVSDNVRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLTPTAVDYLNERYGINYEEGIEEG 318

Query: 310 EEEGGEDEEGPEAGEDSDAA 324
           EEE  E+EEG EAGEDSDAA
Sbjct: 319 EEE-EEEEEGVEAGEDSDAA 337

[Close]
BLAST of ClCG06G015810 vs. NCBI nr
Match: XP_022148353.1 (50S ribosomal protein L4, chloroplastic [Momordica charantia])

HSP 1 Score: 500.0 bits (1286), Expect = 1.6e-137
Identity = 272/296 (91.89%), Postives = 278/296 (93.92%), Query Frame = 0 

Query: 35  MAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFT 94
           MA STTP SLSFFTSSVFLSS N QNSKL C+WKPNSLKPQTKPLSISS+LATLPVLSF 
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSAN-QNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFA 60

Query: 95  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 154
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 155 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDK 214
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 215 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILD 274
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNI TLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 275 SDKLVLTPAAVEYLNERYGINYEEGIEDEEEE------GGEDEEGPEAGEDSDAAE 325
           SDK+VLTPAAV+YLNERYGINYE GIED+EEE      G E EEG EAGEDSDAAE
Sbjct: 241 SDKMVLTPAAVDYLNERYGINYEGGIEDDEEEEEEEQQGEEGEEGLEAGEDSDAAE 295

[Close]
BLAST of ClCG06G015810 vs. NCBI nr
Match: XP_008464054.1 (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 498.0 bits (1281), Expect = 6.0e-137
Identity = 271/291 (93.13%), Postives = 277/291 (95.19%), Query Frame = 0 

Query: 35  MAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFT 94
           MAAST+P SLSFFTSSVFLSSP  QN  L  N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 95  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 154
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 155 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDK 214
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 215 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILD 274
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNI TLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 275 SDKLVLTPAAVEYLNERYGINYEEGI-EDEEEEGGEDEEGPEAGEDSDAAE 325
           SDKLVLTPAAV+YLNERYGINYEEGI E+EEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEGVEAGEDSDAAE 291

[Close]
BLAST of ClCG06G015810 vs. NCBI nr
Match: XP_023532270.1 (50S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496.5 bits (1277), Expect = 1.7e-136
Identity = 270/293 (92.15%), Postives = 278/293 (94.88%), Query Frame = 0 

Query: 35  MAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFT 94
           MAASTTP SLSFF+SS+FLSS N QNSKL CNWKPNS KPQ+KPLSISS+LATLPVLSFT
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSAN-QNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFT 60

Query: 95  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 154
           GEKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 155 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDK 214
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 215 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILD 274
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNI TLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILN 240

Query: 275 SDKLVLTPAAVEYLNERYGINYEEGIEDEEEEGGED---EEGPEAGEDSDAAE 325
           SDKLVLTPAAV+YLNERYGINYEEGIEDEEEE  E+   EEG EAGE+ DAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLEAGEELDAAE 292

[Close]
BLAST of ClCG06G015810 vs. ExPASy Swiss-Prot
Match: O80361 (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.6e-97
Identity = 196/282 (69.50%), Postives = 235/282 (83.33%), Query Frame = 0 

Query: 43  SLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFTGEKVGETY 102
           SLSFF+SS+FLS+PN+Q+SK      P  L       +I SE+AT+P+LSF G +VG T 
Sbjct: 4   SLSFFSSSIFLSNPNIQSSKHLLFRSPKQLS-VAAIATIRSEVATIPILSFDGAEVGSTT 63

Query: 103 LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSM 162
           L+LKSAP +TARAVVHR + TD +N+RRGTASTLTR+EV GGG KPY QKKTG+ARRGS 
Sbjct: 64  LNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSN 123

Query: 163 RTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDKFEKPKTKE 222
           RTPLRPGGGVVFGPKP+DWS+KIN+KEKRLAISTA++SA+ NTIVVE+F DKFEKPKTKE
Sbjct: 124 RTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTKE 183

Query: 223 FIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILDSDKLVLTP 282
           FI  ++RWG+DPKEKSLFLMT+VSDNV LSSRNI TLK+LTPRTLNLFDILDS+KLVLT 
Sbjct: 184 FIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTK 243

Query: 283 AAVEYLNERYGINYEEGIEDEEEEGGEDEEGPEAGEDSDAAE 325
           +AV++LNERYG   E   EDEEE+  ED +G EA E ++++E
Sbjct: 244 SAVDFLNERYG--DENEWEDEEEDDQEDNDGGEAEESTESSE 282

[Close]
BLAST of ClCG06G015810 vs. ExPASy Swiss-Prot
Match: O50061 (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 PE=2 SV=2)

HSP 1 Score: 356.3 bits (913), Expect = 3.7e-97
Identity = 193/280 (68.93%), Postives = 233/280 (83.21%), Query Frame = 0 

Query: 36  AASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFTG 95
           +++T P SLSFF+SS+FLSS + Q  K   +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 96  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 155
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 156 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAF---NTIVVEDFG 215
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 216 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDI 275
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNI TL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 276 LDSDKLVLTPAAVEYLNERYGIN-YEEGIEDEEEEGGEDE 312
           L++DKLVLTPAAVE+LN RYG++  EE  +DE+E  G +E
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEGSEE 281

[Close]
BLAST of ClCG06G015810 vs. ExPASy Swiss-Prot
Match: O49937 (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.3e-91
Identity = 180/285 (63.16%), Postives = 227/285 (79.65%), Query Frame = 0 

Query: 35  MAAST-TPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSF 94
           MA ST + LSLSFF+SS+F S     +SK       +S    +  LSI SEL  LP+L+F
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 95  TGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKK 154
           +GEKVGET+L+LK+APPE ARAVVHR +IT  QNKRRGTASTLTRAEV GGGRKPY QKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 155 TGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGD 214
           TG+ARRGS  +PLRPGGGV+FGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F +
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 215 KFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDIL 274
            FEKPKTK+FIAA++RWG+DP EKSLF + ++ +NV  S RNIRTLKLLTPR+LNLFD+L
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 275 DSDKLVLTPAAVEYLNERYGINYEEGIEDEEEEGGEDEEGPEAGE 319
           +++KLV T   ++YLN+RYG+   + +EDE+EE  E+EEG E  +
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGV---DTLEDEDEEEEEEEEGEEVDD 282

[Close]
BLAST of ClCG06G015810 vs. ExPASy Swiss-Prot
Match: Q8DMN0 (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rplD PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 9.1e-56
Identity = 110/204 (53.92%), Postives = 148/204 (72.55%), Query Frame = 0 

Query: 90  VLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 149
           V  + G   GE  LDL +A PETA  +VHRA++    N R+GT ST TRAEV GGGRKP+
Sbjct: 6   VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPW 65

Query: 150 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVE 209
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+S K+NRKE+RLA+ TA+ S   + IVV+
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVEDLIVVQ 125

Query: 210 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNL 269
           DF D   +PKTKE + AL+RWGI+P++K L L  ++++ V LS+RN+ TLKLL    LN+
Sbjct: 126 DFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNV 185

Query: 270 FDILDSDKLVLTPAAVEYLNERYG 294
           FD+L +D++V T  A+  + E YG
Sbjct: 186 FDLLYADRIVATTGAIAKIQEVYG 209

[Close]
BLAST of ClCG06G015810 vs. ExPASy Swiss-Prot
Match: B0JI02 (50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplD PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.7e-55
Identity = 106/204 (51.96%), Postives = 152/204 (74.51%), Query Frame = 0 

Query: 90  VLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 149
           V ++ GE+ G   L+LK+A PETA+ ++HR +++     R+G AS+ TR+EV GGGRKP+
Sbjct: 6   VKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGGGRKPW 65

Query: 150 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVE 209
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+ +K+NRKEKRLA+ TA+ S A N IVVE
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALISQADNFIVVE 125

Query: 210 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNL 269
            F ++F +PKTKE  AAL RWG  P+EK L ++TE+ +NV LS RNI  LK++   +LN+
Sbjct: 126 SFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKIIRADSLNV 185

Query: 270 FDILDSDKLVLTPAAVEYLNERYG 294
           +D++ +D+++ T AA+  + E YG
Sbjct: 186 YDVILADRVIATAAALAKIEEVYG 209

[Close]
BLAST of ClCG06G015810 vs. ExPASy TrEMBL
Match: A0A0A0KFB8 (PPIase cyclophilin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G187950 PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.4e-139
Identity = 277/320 (86.56%), Postives = 292/320 (91.25%), Query Frame = 0 

Query: 10  FFATDLQREWITK------LSAELSSSIAPTMAASTTPLSLSFFTSSVFLSSPNLQNSKL 69
           +FATDLQR+WIT        ++  SSS APTMA S +P SLSFFTSSVFLSSP+ QN  L
Sbjct: 124 YFATDLQRKWITSDIHREHNTSPRSSSFAPTMATSISPSSLSFFTSSVFLSSPSHQNLNL 183

Query: 70  CCNWKPNSLKPQTKPLSISSELATLPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIIT 129
             N KPNSLKPQTK LSISSELATLPVLSFTG+KVGETYLDLKSAPPETARAVVHRAIIT
Sbjct: 184 FFNSKPNSLKPQTKTLSISSELATLPVLSFTGQKVGETYLDLKSAPPETARAVVHRAIIT 243

Query: 130 DQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSI 189
           DQQNKRRGTASTLTRAEVSGGG+KPY+QKKTG+ARRGSMRTPLRPGGGVVFGPKPRDWSI
Sbjct: 244 DQQNKRRGTASTLTRAEVSGGGKKPYKQKKTGRARRGSMRTPLRPGGGVVFGPKPRDWSI 303

Query: 190 KINRKEKRLAISTAVASAAFNTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMT 249
           KINRKEK+LAISTAVASAA NTIVVE+FGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMT
Sbjct: 304 KINRKEKKLAISTAVASAAVNTIVVEEFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMT 363

Query: 250 EVSDNVRLSSRNIRTLKLLTPRTLNLFDILDSDKLVLTPAAVEYLNERYGINYEEGIEDE 309
           EVSDNVRLSSRNI TLKLLTPRTLNLFDILDSDKLVLTP AV+YLNERYGINYEEGIE+ 
Sbjct: 364 EVSDNVRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLTPTAVDYLNERYGINYEEGIEEG 423

Query: 310 EEEGGEDEEGPEAGEDSDAA 324
           EEE  E+EEG EAGEDSDAA
Sbjct: 424 EEE-EEEEEGVEAGEDSDAA 442

[Close]
BLAST of ClCG06G015810 vs. ExPASy TrEMBL
Match: A0A6J1D3V7 (50S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017027 PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 7.6e-138
Identity = 272/296 (91.89%), Postives = 278/296 (93.92%), Query Frame = 0 

Query: 35  MAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFT 94
           MA STTP SLSFFTSSVFLSS N QNSKL C+WKPNSLKPQTKPLSISS+LATLPVLSF 
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSAN-QNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFA 60

Query: 95  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 154
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 155 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDK 214
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 215 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILD 274
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNI TLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 275 SDKLVLTPAAVEYLNERYGINYEEGIEDEEEE------GGEDEEGPEAGEDSDAAE 325
           SDK+VLTPAAV+YLNERYGINYE GIED+EEE      G E EEG EAGEDSDAAE
Sbjct: 241 SDKMVLTPAAVDYLNERYGINYEGGIEDDEEEEEEEQQGEEGEEGLEAGEDSDAAE 295

[Close]
BLAST of ClCG06G015810 vs. ExPASy TrEMBL
Match: A0A1S3CM35 (50S ribosomal protein L4, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502034 PE=3 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.9e-137
Identity = 271/291 (93.13%), Postives = 277/291 (95.19%), Query Frame = 0 

Query: 35  MAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFT 94
           MAAST+P SLSFFTSSVFLSSP  QN  L  N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 95  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 154
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 155 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDK 214
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 215 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILD 274
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNI TLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 275 SDKLVLTPAAVEYLNERYGINYEEGI-EDEEEEGGEDEEGPEAGEDSDAAE 325
           SDKLVLTPAAV+YLNERYGINYEEGI E+EEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEGVEAGEDSDAAE 291

[Close]
BLAST of ClCG06G015810 vs. ExPASy TrEMBL
Match: A0A1S3CL27 (50S ribosomal protein L4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502034 PE=3 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.4e-136
Identity = 271/297 (91.25%), Postives = 277/297 (93.27%), Query Frame = 0 

Query: 35  MAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFT 94
           MAAST+P SLSFFTSSVFLSSP  QN  L  N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 95  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 154
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 155 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDK 214
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 215 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILD 274
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNI TLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 275 SDKLVLTPAAVEYLNERYGINYEEGI-------EDEEEEGGEDEEGPEAGEDSDAAE 325
           SDKLVLTPAAV+YLNERYGINYEEGI       E+EEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEEEEEEEGVEAGEDSDAAE 297

[Close]
BLAST of ClCG06G015810 vs. ExPASy TrEMBL
Match: A0A6J1G917 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451819 PE=3 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.4e-136
Identity = 269/293 (91.81%), Postives = 277/293 (94.54%), Query Frame = 0 

Query: 35  MAASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFT 94
           MAAST P SLSFF+SS+FLSS N QNSKL CNWKPNS KPQ+KPLSISS+LATLPVLSFT
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSAN-QNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFT 60

Query: 95  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 154
           GEKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 155 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAFNTIVVEDFGDK 214
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 215 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDILD 274
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNI TLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILN 240

Query: 275 SDKLVLTPAAVEYLNERYGINYEEGIEDEEEEGGED---EEGPEAGEDSDAAE 325
           SDKLVLTPAAV+YLNERYGINYEEGIEDEEEE  E+   EEG +AGED DAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLDAGEDLDAAE 292

[Close]
BLAST of ClCG06G015810 vs. TAIR 10
Match: AT1G07320.3 (ribosomal protein L4 )

HSP 1 Score: 357.5 bits (916), Expect = 1.2e-98
Identity = 190/274 (69.34%), Postives = 230/274 (83.94%), Query Frame = 0 

Query: 36  AASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFTG 95
           +++T P SLSFF+SS+FLSS + Q  K   +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 96  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 155
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 156 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAF---NTIVVEDFG 215
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 216 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDI 275
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNI TL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 276 LDSDKLVLTPAAVEYLNERYGINYEEGIEDEEEE 307
           L++DKLVLTPAAVE+LN RYG++  E  +D+E+E
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDE 275

[Close]
BLAST of ClCG06G015810 vs. TAIR 10
Match: AT1G07320.4 (ribosomal protein L4 )

HSP 1 Score: 357.5 bits (916), Expect = 1.2e-98
Identity = 190/274 (69.34%), Postives = 230/274 (83.94%), Query Frame = 0 

Query: 36  AASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFTG 95
           +++T P SLSFF+SS+FLSS + Q  K   +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 96  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 155
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 156 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAF---NTIVVEDFG 215
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 216 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDI 275
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNI TL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 276 LDSDKLVLTPAAVEYLNERYGINYEEGIEDEEEE 307
           L++DKLVLTPAAVE+LN RYG++  E  +D+E+E
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDE 275

[Close]
BLAST of ClCG06G015810 vs. TAIR 10
Match: AT1G07320.2 (ribosomal protein L4 )

HSP 1 Score: 356.7 bits (914), Expect = 2.0e-98
Identity = 191/278 (68.71%), Postives = 232/278 (83.45%), Query Frame = 0 

Query: 36  AASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFTG 95
           +++T P SLSFF+SS+FLSS + Q  K   +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 96  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 155
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 156 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAF---NTIVVEDFG 215
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 216 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDI 275
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNI TL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 276 LDSDKLVLTPAAVEYLNERYGINYEEGIEDEEEEGGED 311
           L++DKLVLTPAAVE+LN RYG++  E  +D+E+E  E+
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEEE 279

[Close]
BLAST of ClCG06G015810 vs. TAIR 10
Match: AT1G07320.1 (ribosomal protein L4 )

HSP 1 Score: 356.3 bits (913), Expect = 2.6e-98
Identity = 193/280 (68.93%), Postives = 233/280 (83.21%), Query Frame = 0 

Query: 36  AASTTPLSLSFFTSSVFLSSPNLQNSKLCCNWKPNSLKPQTKPLSISSELATLPVLSFTG 95
           +++T P SLSFF+SS+FLSS + Q  K   +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 96  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 155
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 156 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAF---NTIVVEDFG 215
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 216 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIRTLKLLTPRTLNLFDI 275
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNI TL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 276 LDSDKLVLTPAAVEYLNERYGIN-YEEGIEDEEEEGGEDE 312
           L++DKLVLTPAAVE+LN RYG++  EE  +DE+E  G +E
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEGSEE 281

[Close]
BLAST of ClCG06G015810 vs. TAIR 10
Match: AT2G20060.1 (Ribosomal protein L4/L1 family )

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-19
Identity = 78/278 (28.06%), Postives = 139/278 (50.00%), Query Frame = 0 

Query: 27  LSSSIAPTMAASTTPLSLSFFTSSVFLSSPNLQNSKLCCN-WKPNSLKPQ---TKPLSIS 86
           L  S +P ++A+T+   L+  T+ +      L N KL  +   P+   P    TK   ++
Sbjct: 19  LGRSSSPNLSANTSGNGLASLTNDLKYGMALLSNRKLSTSILTPDDSFPSDLLTKKTVLT 78

Query: 87  SELA-------TLPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTAST 146
            +          +PV +F  E+ G   L          + ++H  +      +++GT ST
Sbjct: 79  PDRTIGQYQDLVIPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHST 138

Query: 147 LTRAEVSGGGRKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAIS 206
            T +EVSG GRKP+ QK TG+AR G++R P   GG V+ GPKPR  +IK+N++ +RL + 
Sbjct: 139 KTLSEVSGTGRKPWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLK 198

Query: 207 TAVASAAF--NTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSS 266
            A+ + A     +V +D G      KTK  +    +   + K+  +     + + ++L++
Sbjct: 199 IALTARAAEGKLLVFDDLG--LPTHKTKNIVNYYNQME-NTKKVLVVEGGPIDEKLKLAT 258

Query: 267 RNIRTLKLLTPRTLNLFDILDSDKLVLTPAAVEYLNER 292
           +N+  + ++    LN++ IL  D L+++  AV  + ER
Sbjct: 259 QNLHYVNIIPSIGLNVYSILLHDTLLMSRDAVNKIVER 293

The following BLAST results are available for this feature:
BLAST of ClCG06G015810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902816.14.7e-14295.5250S ribosomal protein L4, chloroplastic [Benincasa hispida][more]
KAE8646954.12.9e-13986.56hypothetical protein Csa_020647 [Cucumis sativus][more]
XP_022148353.11.6e-13791.8950S ribosomal protein L4, chloroplastic [Momordica charantia][more]
XP_008464054.16.0e-13793.13PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo][more]
XP_023532270.11.7e-13692.1550S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of ClCG06G015810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O803611.6e-9769.5050S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=... [more]
O500613.7e-9768.9350S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 ... [more]
O499371.3e-9163.1650S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=... [more]
Q8DMN09.1e-5653.9250S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
B0JI022.7e-5551.9650S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G... [more]
BLAST of ClCG06G015810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFB81.4e-13986.56PPIase cyclophilin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=... [more]
A0A6J1D3V77.6e-13891.8950S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A1S3CM352.9e-13793.1350S ribosomal protein L4, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A1S3CL271.4e-13691.2550S ribosomal protein L4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1G9172.4e-13691.8150S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX... [more]
BLAST of ClCG06G015810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07320.31.2e-9869.34ribosomal protein L4 [more]
AT1G07320.41.2e-9869.34ribosomal protein L4 [more]
AT1G07320.22.0e-9868.71ribosomal protein L4 [more]
AT1G07320.12.6e-9868.93ribosomal protein L4 [more]
AT2G20060.19.2e-1928.06Ribosomal protein L4/L1 family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 112..291
e-value: 5.0E-54
score: 182.9
IPR01300550S ribosomal protein uL4TIGRFAMTIGR03953TIGR03953coord: 111..290
e-value: 6.1E-58
score: 193.2
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 29..306
IPR01300550S ribosomal protein uL4HAMAPMF_01328_BRibosomal_L4_Bcoord: 93..293
score: 29.631329
IPR023574Ribosomal protein L4 domain superfamilyGENE3D3.40.1370.10coord: 72..300
e-value: 2.8E-61
score: 208.6
IPR023574Ribosomal protein L4 domain superfamilySUPERFAMILY52166Ribosomal protein L4coord: 87..293
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 297..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..171
NoneNo IPR availablePANTHERPTHR10746:SF639S RIBOSOMAL PROTEIN L4, MITOCHONDRIALcoord: 29..306

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G015810.2ClCG06G015810.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome