ClCG06G007155 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G007155
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGlial fibrillary acidic protein-like
LocationCG_Chr06: 8734452 .. 8735057 (-)
RNA-Seq ExpressionClCG06G007155
SyntenyClCG06G007155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCTAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAACTGAAGAAGGAATATCAGGAAATGTCAGCTGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCTGATCAATTCGCAACACAGGCTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

mRNA sequence

ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTGGTGACAGATGACTATGCTCAACTGAAGAAGGAATATCAGGAAATGTCAGCTGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCTGATCAATTCGCAACACAGGCTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

Coding sequence (CDS)

ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTGGTGACAGATGACTATGCTCAACTGAAGAAGGAATATCAGGAAATGTCAGCTGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCTGATCAATTCGCAACACAGGCTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG

Protein sequence

MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH
Homology
BLAST of ClCG06G007155 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 7.1e-44
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 0

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           M+KKNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    
Sbjct: 54  MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113

Query: 61  VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
           +E LQ+  +EYKSQL                            EV+ DDYAQL ++YQEM
Sbjct: 114 IEVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEKYQEM 173

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
           S DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR   
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTD 233

BLAST of ClCG06G007155 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 4.6e-43
Identity = 103/201 (51.24%), Postives = 134/201 (66.67%), Query Frame = 0

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           ++KKNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    
Sbjct: 54  VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113

Query: 61  VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
           +E LQ+S +EYKSQL                            EV+TDDYAQL ++YQEM
Sbjct: 114 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 173

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
           S DF +W+DEY  LRR YD+   ++E+GAEKLRQMA +ADQF+ QA TL+QG++PTR   
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDID 233

BLAST of ClCG06G007155 vs. NCBI nr
Match: KAA0033848.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 5.8e-38
Identity = 100/207 (48.31%), Postives = 137/207 (66.18%), Query Frame = 0

Query: 2   KKKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSS 61
           ++KN + LR+++ VL  E E  +E +      KEL+ ELE ++KV  +FQSAL EQ TS+
Sbjct: 41  QEKNLKRLREMNQVLEPENEGLREEVNSKGEHKELKHELESVSKVFVDFQSALVEQGTST 100

Query: 62  QKIVAEVENLQNSAKEYKSQLT---------------------------EVVTDDYAQLK 121
           Q+I A +E LQNS KEYK ++T                           EVVT+D+A+LK
Sbjct: 101 QRITAGIEILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLK 160

Query: 122 KEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIV 175
            E++E+ ADFA+WRDEY+++R  Y++V+GQ+EQG +KLR MA+ ADQF+T+   LQQ IV
Sbjct: 161 NEHKEVLADFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIALQQDIV 220

BLAST of ClCG06G007155 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 3.3e-33
Identity = 92/182 (50.55%), Postives = 120/182 (65.93%), Query Frame = 0

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           ++KKNKRLLR++  LH E E +K  +             +   Q ++EE    SQ I AE
Sbjct: 298 VRKKNKRLLRNIANLHEEIEAKKTAMG------------IEVLQHSIEEY--KSQLIEAE 357

Query: 61  VEN--LQNSAKEYKSQL------TEVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYD 120
            +N  LQ +    +SQL       +V+TDDYAQL ++YQEMS DF +W+DEY  LRR YD
Sbjct: 358 SKNNFLQKAVNSSESQLLICRKARKVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYD 417

Query: 121 NVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGC 175
           +  G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR   KELS FLGII Q LGRF C
Sbjct: 418 DAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFRC 465

BLAST of ClCG06G007155 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 4.0e-31
Identity = 78/141 (55.32%), Postives = 94/141 (66.67%), Query Frame = 0

Query: 61  VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
           +E LQ+S KEYKSQL                            EV+TDDYAQL ++YQEM
Sbjct: 3   IEVLQHSIKEYKSQLLEVESKNKFLQKAVNSSESQLLICRKAREVITDDYAQLIEKYQEM 62

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
           S DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++ADQF  QA TL+QG++PTR   
Sbjct: 63  SIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTD 122

BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.4e-44
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 0

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           M+KKNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    
Sbjct: 54  MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113

Query: 61  VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
           +E LQ+  +EYKSQL                            EV+ DDYAQL ++YQEM
Sbjct: 114 IEVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEKYQEM 173

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
           S DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR   
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTD 233

BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.2e-43
Identity = 103/201 (51.24%), Postives = 134/201 (66.67%), Query Frame = 0

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           ++KKNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    
Sbjct: 54  VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113

Query: 61  VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
           +E LQ+S +EYKSQL                            EV+TDDYAQL ++YQEM
Sbjct: 114 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 173

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
           S DF +W+DEY  LRR YD+   ++E+GAEKLRQMA +ADQF+ QA TL+QG++PTR   
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDID 233

BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match: A0A5D3BQ93 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00080 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.8e-38
Identity = 100/207 (48.31%), Postives = 137/207 (66.18%), Query Frame = 0

Query: 2   KKKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSS 61
           ++KN + LR+++ VL  E E  +E +      KEL+ ELE ++KV  +FQSAL EQ TS+
Sbjct: 41  QEKNLKRLREMNQVLEPENEGLREEVNSKGEHKELKHELESVSKVFVDFQSALVEQGTST 100

Query: 62  QKIVAEVENLQNSAKEYKSQLT---------------------------EVVTDDYAQLK 121
           Q+I A +E LQNS KEYK ++T                           EVVT+D+A+LK
Sbjct: 101 QRITAGIEILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLK 160

Query: 122 KEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIV 175
            E++E+ ADFA+WRDEY+++R  Y++V+GQ+EQG +KLR MA+ ADQF+T+   LQQ IV
Sbjct: 161 NEHKEVLADFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIALQQDIV 220

BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 92/182 (50.55%), Postives = 120/182 (65.93%), Query Frame = 0

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           ++KKNKRLLR++  LH E E +K  +             +   Q ++EE    SQ I AE
Sbjct: 298 VRKKNKRLLRNIANLHEEIEAKKTAMG------------IEVLQHSIEEY--KSQLIEAE 357

Query: 61  VEN--LQNSAKEYKSQL------TEVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYD 120
            +N  LQ +    +SQL       +V+TDDYAQL ++YQEMS DF +W+DEY  LRR YD
Sbjct: 358 SKNNFLQKAVNSSESQLLICRKARKVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYD 417

Query: 121 NVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGC 175
           +  G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR   KELS FLGII Q LGRF C
Sbjct: 418 DAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFRC 465

BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match: A0A5D3DUN1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17837G00010 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.9e-31
Identity = 78/141 (55.32%), Postives = 94/141 (66.67%), Query Frame = 0

Query: 61  VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
           +E LQ+S KEYKSQL                            EV+TDDYAQL ++YQEM
Sbjct: 3   IEVLQHSIKEYKSQLLEVESKNKFLQKAVNSSESQLLICRKAREVITDDYAQLIEKYQEM 62

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
           S DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++ADQF  QA TL+QG++PTR   
Sbjct: 63  SIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTD 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065294.17.1e-4451.74glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0025321.14.6e-4351.24glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0033848.15.8e-3848.31glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glia... [more]
KAA0046606.13.3e-3350.55glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
TYK27025.14.0e-3155.32glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VDD93.4e-4451.74Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SM492.2e-4351.24Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BQ932.8e-3848.31Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TXA11.6e-3350.55Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DUN11.9e-3155.32Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..46
NoneNo IPR availableCOILSCoilCoilcoord: 83..103
NoneNo IPR availableCOILSCoilCoilcoord: 54..81
NoneNo IPR availableGENE3D1.10.287.1490coord: 4..157
e-value: 1.3E-8
score: 36.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G007155.1ClCG06G007155.1mRNA