Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCTAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAACTGAAGAAGGAATATCAGGAAATGTCAGCTGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCTGATCAATTCGCAACACAGGCTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG
mRNA sequence
ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTGGTGACAGATGACTATGCTCAACTGAAGAAGGAATATCAGGAAATGTCAGCTGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCTGATCAATTCGCAACACAGGCTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG
Coding sequence (CDS)
ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTGGTGACAGATGACTATGCTCAACTGAAGAAGGAATATCAGGAAATGTCAGCTGATTTTGCAGTATGGAGAGATGAGTATAGTATGTTAAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCTGATCAATTCGCAACACAGGCTACAACCCTCCAACAAGGCATCGTACCCACGCGACCTGACAGCAAGGAGTTGTCTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG
Protein sequence
MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH
Homology
BLAST of ClCG06G007155 vs. NCBI nr
Match:
KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 188.0 bits (476), Expect = 7.1e-44
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 0
Query: 1 MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
M+KKNKRLLR++ LH E E +K I +L+ E+E++N + FQ+AL EQA SSQ+
Sbjct: 54 MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113
Query: 61 VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
+E LQ+ +EYKSQL EV+ DDYAQL ++YQEM
Sbjct: 114 IEVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEKYQEM 173
Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
S DF +W+DEY LRR YD+ G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTD 233
BLAST of ClCG06G007155 vs. NCBI nr
Match:
KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 185.3 bits (469), Expect = 4.6e-43
Identity = 103/201 (51.24%), Postives = 134/201 (66.67%), Query Frame = 0
Query: 1 MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
++KKNKRLLR++ LH E E +K I +L+ E+E++N + FQ+AL EQA SSQ+
Sbjct: 54 VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113
Query: 61 VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
+E LQ+S +EYKSQL EV+TDDYAQL ++YQEM
Sbjct: 114 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 173
Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
S DF +W+DEY LRR YD+ ++E+GAEKLRQMA +ADQF+ QA TL+QG++PTR
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDID 233
BLAST of ClCG06G007155 vs. NCBI nr
Match:
KAA0033848.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 168.3 bits (425), Expect = 5.8e-38
Identity = 100/207 (48.31%), Postives = 137/207 (66.18%), Query Frame = 0
Query: 2 KKKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSS 61
++KN + LR+++ VL E E +E + KEL+ ELE ++KV +FQSAL EQ TS+
Sbjct: 41 QEKNLKRLREMNQVLEPENEGLREEVNSKGEHKELKHELESVSKVFVDFQSALVEQGTST 100
Query: 62 QKIVAEVENLQNSAKEYKSQLT---------------------------EVVTDDYAQLK 121
Q+I A +E LQNS KEYK ++T EVVT+D+A+LK
Sbjct: 101 QRITAGIEILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLK 160
Query: 122 KEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIV 175
E++E+ ADFA+WRDEY+++R Y++V+GQ+EQG +KLR MA+ ADQF+T+ LQQ IV
Sbjct: 161 NEHKEVLADFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIALQQDIV 220
BLAST of ClCG06G007155 vs. NCBI nr
Match:
KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 152.5 bits (384), Expect = 3.3e-33
Identity = 92/182 (50.55%), Postives = 120/182 (65.93%), Query Frame = 0
Query: 1 MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
++KKNKRLLR++ LH E E +K + + Q ++EE SQ I AE
Sbjct: 298 VRKKNKRLLRNIANLHEEIEAKKTAMG------------IEVLQHSIEEY--KSQLIEAE 357
Query: 61 VEN--LQNSAKEYKSQL------TEVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYD 120
+N LQ + +SQL +V+TDDYAQL ++YQEMS DF +W+DEY LRR YD
Sbjct: 358 SKNNFLQKAVNSSESQLLICRKARKVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYD 417
Query: 121 NVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGC 175
+ G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR KELS FLGII Q LGRF C
Sbjct: 418 DAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFRC 465
BLAST of ClCG06G007155 vs. NCBI nr
Match:
TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 145.6 bits (366), Expect = 4.0e-31
Identity = 78/141 (55.32%), Postives = 94/141 (66.67%), Query Frame = 0
Query: 61 VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
+E LQ+S KEYKSQL EV+TDDYAQL ++YQEM
Sbjct: 3 IEVLQHSIKEYKSQLLEVESKNKFLQKAVNSSESQLLICRKAREVITDDYAQLIEKYQEM 62
Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
S DF +W+DEY LRR YD+ G++E+GAEKLRQMA++ADQF QA TL+QG++PTR
Sbjct: 63 SIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTD 122
BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match:
A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.4e-44
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = 0
Query: 1 MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
M+KKNKRLLR++ LH E E +K I +L+ E+E++N + FQ+AL EQA SSQ+
Sbjct: 54 MRKKNKRLLRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMG 113
Query: 61 VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
+E LQ+ +EYKSQL EV+ DDYAQL ++YQEM
Sbjct: 114 IEVLQHLIEEYKSQLIEADSKNNFLQKAVNSSESQLLICRKAREVIIDDYAQLMEKYQEM 173
Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
S DF +W+DEY LRR YD+ G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTD 233
BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match:
A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)
HSP 1 Score: 185.3 bits (469), Expect = 2.2e-43
Identity = 103/201 (51.24%), Postives = 134/201 (66.67%), Query Frame = 0
Query: 1 MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
++KKNKRLLR++ LH E E +K I +L+ E+E++N + FQ+AL EQA SSQ+
Sbjct: 54 VRKKNKRLLRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMG 113
Query: 61 VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
+E LQ+S +EYKSQL EV+TDDYAQL ++YQEM
Sbjct: 114 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 173
Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
S DF +W+DEY LRR YD+ ++E+GAEKLRQMA +ADQF+ QA TL+QG++PTR
Sbjct: 174 SIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDID 233
BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match:
A0A5D3BQ93 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00080 PE=4 SV=1)
HSP 1 Score: 168.3 bits (425), Expect = 2.8e-38
Identity = 100/207 (48.31%), Postives = 137/207 (66.18%), Query Frame = 0
Query: 2 KKKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSS 61
++KN + LR+++ VL E E +E + KEL+ ELE ++KV +FQSAL EQ TS+
Sbjct: 41 QEKNLKRLREMNQVLEPENEGLREEVNSKGEHKELKHELESVSKVFVDFQSALVEQGTST 100
Query: 62 QKIVAEVENLQNSAKEYKSQLT---------------------------EVVTDDYAQLK 121
Q+I A +E LQNS KEYK ++T EVVT+D+A+LK
Sbjct: 101 QRITAGIEILQNSTKEYKIRITEEQCKNALLQEAVASSEHQLLICRNAREVVTEDHARLK 160
Query: 122 KEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIV 175
E++E+ ADFA+WRDEY+++R Y++V+GQ+EQG +KLR MA+ ADQF+T+ LQQ IV
Sbjct: 161 NEHKEVLADFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIALQQDIV 220
BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match:
A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)
HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 92/182 (50.55%), Postives = 120/182 (65.93%), Query Frame = 0
Query: 1 MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
++KKNKRLLR++ LH E E +K + + Q ++EE SQ I AE
Sbjct: 298 VRKKNKRLLRNIANLHEEIEAKKTAMG------------IEVLQHSIEEY--KSQLIEAE 357
Query: 61 VEN--LQNSAKEYKSQL------TEVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYD 120
+N LQ + +SQL +V+TDDYAQL ++YQEMS DF +W+DEY LRR YD
Sbjct: 358 SKNNFLQKAVNSSESQLLICRKARKVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYD 417
Query: 121 NVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGC 175
+ G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR KELS FLGII Q LGRF C
Sbjct: 418 DAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFLGIIGQCLGRFRC 465
BLAST of ClCG06G007155 vs. ExPASy TrEMBL
Match:
A0A5D3DUN1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17837G00010 PE=4 SV=1)
HSP 1 Score: 145.6 bits (366), Expect = 1.9e-31
Identity = 78/141 (55.32%), Postives = 94/141 (66.67%), Query Frame = 0
Query: 61 VENLQNSAKEYKSQL---------------------------TEVVTDDYAQLKKEYQEM 120
+E LQ+S KEYKSQL EV+TDDYAQL ++YQEM
Sbjct: 3 IEVLQHSIKEYKSQLLEVESKNKFLQKAVNSSESQLLICRKAREVITDDYAQLIEKYQEM 62
Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFATQATTLQQGIVPTRPDS 175
S DF +W+DEY LRR YD+ G++E+GAEKLRQMA++ADQF QA TL+QG++PTR
Sbjct: 63 SIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTD 122
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0065294.1 | 7.1e-44 | 51.74 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
KAA0025321.1 | 4.6e-43 | 51.24 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
KAA0033848.1 | 5.8e-38 | 48.31 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glia... | [more] |
KAA0046606.1 | 3.3e-33 | 50.55 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
TYK27025.1 | 4.0e-31 | 55.32 | glial fibrillary acidic protein-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VDD9 | 3.4e-44 | 51.74 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7SM49 | 2.2e-43 | 51.24 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5D3BQ93 | 2.8e-38 | 48.31 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7TXA1 | 1.6e-33 | 50.55 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5D3DUN1 | 1.9e-31 | 55.32 | Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
Match Name | E-value | Identity | Description | |