ClCG05G020510 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATAAGTCGCTTGACAACTTCACAAAAATGGTATAGTTTGGAGTGTAGTAAGTGTGTATATATATTTCAATGTTTTATATTTTTTCCTATTTAAATTCGTGTACATGGAAGTTTGGTGTATAAAACGATATCTAAAAATGCAGGTCATTAATAGGTGTATTTTTTATGAAAAGAGGGAAAATAAAAAAACTATCTTTTTATGATATGTATTGAACAATGAAAAATACTTAAGTGTAGCTTAAGCTACAATTATTTATTGTGTACGTCATATTGCACCCAATTAAAATATTAAATTTACGTGCAATTTATACCACACTTAAATATTTGTTTTTTACAAGATACTCGGAAGGTGAAGACATTGGGATTATAAATACCAAACGAATAGAAACAAATACATTGAAGTCGGTTCATATTGACTACGATGACAAGGATTTTGATTCCATTTTTCAGAGCACTAAAAATGAAATTTGGATTCTTAATTTAAAAAATGAACTATACCATTGATTTTGTTAAGAGATAAAAATAATTTAAATTGTCTATTCCACCAGAACAAAAAATAAAAGTAATTAGAAACTGGTCTAAAATTGTGTTTCTGTTTTAAAAACATCAATATATTCAAATTCAAAGCTACAAAATTTAACTTCTGACCTAAAGCCATTTATTTATTTTCCCCGAGGAAGAAATGCTATTTATTAAAGCGAAATTGCTAATGTCTTGCCAATGATACTCAAATCTAAATTGTCTATTGACTAAATGATTTTAATTAGATTATTATTCNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTACAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA ATGATAAGTCGCTTGACAACTTCACAAAAATGGTATAGTTTGGAGTGTACTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTACAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA ATGATAAGTCGCTTGACAACTTCACAAAAATGGTATAGTTTGGAGTGTACTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTACAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA MISRLTTSQKWYSLECTLFQSLLFEACGRTVNPVSGAVGLLYSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV Homology
BLAST of ClCG05G020510 vs. NCBI nr
Match: XP_038899091.1 (LOB domain-containing protein 39-like [Benincasa hispida]) HSP 1 Score: 270.4 bits (690), Expect = 9.8e-69 Identity = 130/147 (88.44%), Postives = 135/147 (91.84%), Query Frame = 0
BLAST of ClCG05G020510 vs. NCBI nr
Match: XP_008452637.1 (PREDICTED: LOB domain-containing protein 39-like [Cucumis melo] >KAA0064436.1 LOB domain-containing protein 39-like [Cucumis melo var. makuwa]) HSP 1 Score: 270.4 bits (690), Expect = 9.8e-69 Identity = 129/147 (87.76%), Postives = 133/147 (90.48%), Query Frame = 0
BLAST of ClCG05G020510 vs. NCBI nr
Match: XP_004141401.1 (LOB domain-containing protein 39 [Cucumis sativus] >KGN55262.1 hypothetical protein Csa_012579 [Cucumis sativus]) HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68 Identity = 133/149 (89.26%), Postives = 138/149 (92.62%), Query Frame = 0
BLAST of ClCG05G020510 vs. NCBI nr
Match: XP_023535944.1 (LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 241.9 bits (616), Expect = 3.7e-60 Identity = 120/143 (83.92%), Postives = 127/143 (88.81%), Query Frame = 0
BLAST of ClCG05G020510 vs. NCBI nr
Match: KAG7024296.1 (LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58 Identity = 118/143 (82.52%), Postives = 127/143 (88.81%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy Swiss-Prot
Match: Q9SZE8 (LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 4.2e-22 Identity = 73/178 (41.01%), Postives = 94/178 (52.81%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 4.8e-18 Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17 Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12 Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy Swiss-Prot
Match: Q9CA30 (LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12 Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy TrEMBL
Match: A0A5A7VDI5 (LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001480 PE=3 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 4.8e-69 Identity = 129/147 (87.76%), Postives = 133/147 (90.48%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy TrEMBL
Match: A0A1S3BVG9 (LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE=3 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 4.8e-69 Identity = 129/147 (87.76%), Postives = 133/147 (90.48%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy TrEMBL
Match: A0A0A0L3S5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68 Identity = 133/149 (89.26%), Postives = 138/149 (92.62%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy TrEMBL
Match: A0A6J1FEE1 (LOB domain-containing protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443315 PE=3 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 1.9e-57 Identity = 116/143 (81.12%), Postives = 125/143 (87.41%), Query Frame = 0
BLAST of ClCG05G020510 vs. ExPASy TrEMBL
Match: A0A6J1IIW5 (LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111477277 PE=3 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 5.7e-54 Identity = 109/141 (77.30%), Postives = 120/141 (85.11%), Query Frame = 0
BLAST of ClCG05G020510 vs. TAIR 10
Match: AT4G37540.1 (LOB domain-containing protein 39 ) HSP 1 Score: 105.9 bits (263), Expect = 3.0e-23 Identity = 73/178 (41.01%), Postives = 94/178 (52.81%), Query Frame = 0
BLAST of ClCG05G020510 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 ) HSP 1 Score: 92.4 bits (228), Expect = 3.4e-19 Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 0
BLAST of ClCG05G020510 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 ) HSP 1 Score: 89.7 bits (221), Expect = 2.2e-18 Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 0
BLAST of ClCG05G020510 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 ) HSP 1 Score: 74.7 bits (182), Expect = 7.4e-14 Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 0
BLAST of ClCG05G020510 vs. TAIR 10
Match: AT1G68510.1 (LOB domain-containing protein 42 ) HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13 Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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