ClCG05G016220 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGAGCTGTTCGGGATTTCGCTGTGGTGCCTGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGGACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATTGCCGAGCCTGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCAAGAGTCACTACCACTCTCTTCGCATGTAAAGTTTCCTTGATAACTTACACTTCTTGATTTTATTTTGTATTATGGAGGCGAAATTTTTGTTTCTTTTGGTGTTTAGCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGTAATTATTCTCATACCTTGTATCTGGTGATTAAAGCTGAAATTTGCTCACATGGGTTGTCATGTTATCCTCCCATTGTTGTTCAAATTTTCATTCTTATCTTTTGTTATGCATGTAGGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCCTGAGTAAAGGTATGCTTGAGTTTATTTCAGCATTGTTTCTTTGTTGTTTTTACTTCCTTCCATGCTAGATTGATAATTTTGCATTTAAATTTGTTCATAAAGCACCATTGAAGCGTTCTACTACCTTAAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACTCAAGGTTGGTTGAGTTTGGTTTGTTTGTTTTTATTTTATTTTATTTATTATTTTTTTTTTTTTTTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTTGTGCTTGATTACCTTTGATTGATCAAGGAAATATTTCAATATTTTTCAGAGCAAAAGCTGAGCATGAGGGATATTAGTAGGGGAAAGGGGTCAAAAATGAAGCAATTAGAGAGGAACGTACAAAAGAAGAGGAAGTATCAATCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATAGTAATGGAGGTTTGCAGGGTCCACTGTGTGGGGATGCTTCAGATAATGACCTGCAGGAGGACTGAACCCTGGATTTCACTTTGGTACCTGCTTATCACATTTATTTCTAATTTTGGCGTCCTTTTTCTAATAAATGCAAGCCTTTCCATATGATTGTTGTTAGAATAAATTTTGATTTTCTTAATAAATTTTCCATTTTCGTTCTATTGCTCATTCTTGTACCACTGATTGTTGTTAGCTTTCTTAGCTTAGCCCTACGGAATTGAGTTTGAAATTTAGAATTGTAGTCTGTTTATGAACCTATTTGATGTCTTTTTACATTGTGATATGTAAATCATGTTCTTGTCGTCATGGTTTAGCTTAAGGTATGTTTGGATTAACTTTCTAAGGGCTTAAAAGCATTAAAACACTTTTATAAGCTCTAAGTATTATTGTAGCGAAGTTTCGACTGAATGAATATAGTTTTTCTTCAGTTGAACCTTCCCTCAGCAAATTGAATGCCATAAAATAAACTAAAATGGTTTTGTTCATTCCATGCAAACAAATACAAATGTAATACTTCCCTTCATATATTTACATCTATGTGTCATGTATTCCTCTATGTTTTAACACTTCCTCACCTTTACATCTTTCAGGAGTGTGAAAACCAGATTCTCTTGTGCCCTTAATTATCCCAACTCTCGAAGATTGGTCCATTTTGAAGTTGGATTTGGATCGTCTGTTTTTCCTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAA ATGGAGGGAGCTGTTCGGGATTTCGCTGTGGTGCCTGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGGACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATTGCCGAGCCTGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCAAGAGTCACTACCACTCTCTTCGCATCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCCTGAGTAAAGCACCATTGAAGCGTTCTACTACCTTAAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACTCAAGAGCAAAAGCTGAGCATGAGGGATATTAGTAGGGGAAAGGGGTCAAAAATGAAGCAATTAGAGAGGAACGTACAAAAGAAGAGGAAGGTCCACTGTGTGGGGATGCTTCAGATAATGACCTGCAGGAGGACTGAACCCTGGATTTCACTTTGGAGTGTGAAAACCAGATTCTCTTGTGCCCTTAATTATCCCAACTCTCGAAGATTGGTCCATTTTGAAGTTGGATTTGGATCGTCTGTTTTTCCTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAA ATGGAGGGAGCTGTTCGGGATTTCGCTGTGGTGCCTGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGGACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATTGCCGAGCCTGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCAAGAGTCACTACCACTCTCTTCGCATCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCCTGAGTAAAGCACCATTGAAGCGTTCTACTACCTTAAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACTCAAGAGCAAAAGCTGAGCATGAGGGATATTAGTAGGGGAAAGGGGTCAAAAATGAAGCAATTAGAGAGGAACGTACAAAAGAAGAGGAAGGTCCACTGTGTGGGGATGCTTCAGATAATGACCTGCAGGAGGACTGAACCCTGGATTTCACTTTGGAGTGTGAAAACCAGATTCTCTTGTGCCCTTAATTATCCCAACTCTCGAAGATTGGTCCATTTTGAAGTTGGATTTGGATCGTCTGTTTTTCCTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAA MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRKVHCVGMLQIMTCRRTEPWISLWSVKTRFSCALNYPNSRRLVHFEVGFGSSVFPFSPSPSFSLGH Homology
BLAST of ClCG05G016220 vs. NCBI nr
Match: XP_004145496.1 (nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypothetical protein Csa_012234 [Cucumis sativus]) HSP 1 Score: 294.7 bits (753), Expect = 7.0e-76 Identity = 157/163 (96.32%), Postives = 159/163 (97.55%), Query Frame = 0
BLAST of ClCG05G016220 vs. NCBI nr
Match: KAG6591524.1 (Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 292.4 bits (747), Expect = 3.5e-75 Identity = 161/208 (77.40%), Postives = 172/208 (82.69%), Query Frame = 0
BLAST of ClCG05G016220 vs. NCBI nr
Match: XP_008452844.1 (PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa] >TYK20014.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa]) HSP 1 Score: 290.0 bits (741), Expect = 1.7e-74 Identity = 154/163 (94.48%), Postives = 157/163 (96.32%), Query Frame = 0
BLAST of ClCG05G016220 vs. NCBI nr
Match: XP_038897508.1 (nuclear nucleic acid-binding protein C1D [Benincasa hispida]) HSP 1 Score: 287.7 bits (735), Expect = 8.6e-74 Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 0
BLAST of ClCG05G016220 vs. NCBI nr
Match: XP_022976264.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima]) HSP 1 Score: 273.5 bits (698), Expect = 1.7e-69 Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08 Identity = 37/125 (29.60%), Postives = 71/125 (56.80%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q32PE4 (Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.5e-07 Identity = 36/128 (28.12%), Postives = 74/128 (57.81%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07 Identity = 34/118 (28.81%), Postives = 69/118 (58.47%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07 Identity = 37/136 (27.21%), Postives = 75/136 (55.15%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.5e-07 Identity = 35/136 (25.74%), Postives = 77/136 (56.62%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A0A0L118 (Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651890 PE=3 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 3.4e-76 Identity = 157/163 (96.32%), Postives = 159/163 (97.55%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 8.3e-75 Identity = 154/163 (94.48%), Postives = 157/163 (96.32%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 8.3e-75 Identity = 154/163 (94.48%), Postives = 157/163 (96.32%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A6J1IN17 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC111476708 PE=3 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 8.1e-70 Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0
BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A6J1F700 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111442695 PE=3 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 1.8e-69 Identity = 145/163 (88.96%), Postives = 153/163 (93.87%), Query Frame = 0
BLAST of ClCG05G016220 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family ) HSP 1 Score: 152.1 bits (383), Expect = 5.2e-37 Identity = 78/153 (50.98%), Postives = 116/153 (75.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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