ClCG05G016220 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G016220
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Nuclear nucleic acid-binding protein C1D
Location	CG_Chr05: 28400628 .. 28402666 (+)
RNA-Seq Expression	ClCG05G016220
Synteny	ClCG05G016220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGCTGTTCGGGATTTCGCTGTGGTGCCTGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGGACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATTGCCGAGCCTGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCAAGAGTCACTACCACTCTCTTCGCATGTAAAGTTTCCTTGATAACTTACACTTCTTGATTTTATTTTGTATTATGGAGGCGAAATTTTTGTTTCTTTTGGTGTTTAGCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGTAATTATTCTCATACCTTGTATCTGGTGATTAAAGCTGAAATTTGCTCACATGGGTTGTCATGTTATCCTCCCATTGTTGTTCAAATTTTCATTCTTATCTTTTGTTATGCATGTAGGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCCTGAGTAAAGGTATGCTTGAGTTTATTTCAGCATTGTTTCTTTGTTGTTTTTACTTCCTTCCATGCTAGATTGATAATTTTGCATTTAAATTTGTTCATAAAGCACCATTGAAGCGTTCTACTACCTTAAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACTCAAGGTTGGTTGAGTTTGGTTTGTTTGTTTTTATTTTATTTTATTTATTATTTTTTTTTTTTTTTGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTTGTGCTTGATTACCTTTGATTGATCAAGGAAATATTTCAATATTTTTCAGAGCAAAAGCTGAGCATGAGGGATATTAGTAGGGGAAAGGGGTCAAAAATGAAGCAATTAGAGAGGAACGTACAAAAGAAGAGGAAGTATCAATCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATAGTAATGGAGGTTTGCAGGGTCCACTGTGTGGGGATGCTTCAGATAATGACCTGCAGGAGGACTGAACCCTGGATTTCACTTTGGTACCTGCTTATCACATTTATTTCTAATTTTGGCGTCCTTTTTCTAATAAATGCAAGCCTTTCCATATGATTGTTGTTAGAATAAATTTTGATTTTCTTAATAAATTTTCCATTTTCGTTCTATTGCTCATTCTTGTACCACTGATTGTTGTTAGCTTTCTTAGCTTAGCCCTACGGAATTGAGTTTGAAATTTAGAATTGTAGTCTGTTTATGAACCTATTTGATGTCTTTTTACATTGTGATATGTAAATCATGTTCTTGTCGTCATGGTTTAGCTTAAGGTATGTTTGGATTAACTTTCTAAGGGCTTAAAAGCATTAAAACACTTTTATAAGCTCTAAGTATTATTGTAGCGAAGTTTCGACTGAATGAATATAGTTTTTCTTCAGTTGAACCTTCCCTCAGCAAATTGAATGCCATAAAATAAACTAAAATGGTTTTGTTCATTCCATGCAAACAAATACAAATGTAATACTTCCCTTCATATATTTACATCTATGTGTCATGTATTCCTCTATGTTTTAACACTTCCTCACCTTTACATCTTTCAGGAGTGTGAAAACCAGATTCTCTTGTGCCCTTAATTATCCCAACTCTCGAAGATTGGTCCATTTTGAAGTTGGATTTGGATCGTCTGTTTTTCCTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAA

mRNA sequence

ATGGAGGGAGCTGTTCGGGATTTCGCTGTGGTGCCTGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGGACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATTGCCGAGCCTGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCAAGAGTCACTACCACTCTCTTCGCATCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCCTGAGTAAAGCACCATTGAAGCGTTCTACTACCTTAAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACTCAAGAGCAAAAGCTGAGCATGAGGGATATTAGTAGGGGAAAGGGGTCAAAAATGAAGCAATTAGAGAGGAACGTACAAAAGAAGAGGAAGGTCCACTGTGTGGGGATGCTTCAGATAATGACCTGCAGGAGGACTGAACCCTGGATTTCACTTTGGAGTGTGAAAACCAGATTCTCTTGTGCCCTTAATTATCCCAACTCTCGAAGATTGGTCCATTTTGAAGTTGGATTTGGATCGTCTGTTTTTCCTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAA

Coding sequence (CDS)

ATGGAGGGAGCTGTTCGGGATTTCGCTGTGGTGCCTGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGGACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATTGCCGAGCCTGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCAAGAGTCACTACCACTCTCTTCGCATCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCCTGAGTAAAGCACCATTGAAGCGTTCTACTACCTTAAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTCACTCAAGAGCAAAAGCTGAGCATGAGGGATATTAGTAGGGGAAAGGGGTCAAAAATGAAGCAATTAGAGAGGAACGTACAAAAGAAGAGGAAGGTCCACTGTGTGGGGATGCTTCAGATAATGACCTGCAGGAGGACTGAACCCTGGATTTCACTTTGGAGTGTGAAAACCAGATTCTCTTGTGCCCTTAATTATCCCAACTCTCGAAGATTGGTCCATTTTGAAGTTGGATTTGGATCGTCTGTTTTTCCTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAA

Protein sequence

MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRKVHCVGMLQIMTCRRTEPWISLWSVKTRFSCALNYPNSRRLVHFEVGFGSSVFPFSPSPSFSLGH

Homology

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BLAST of ClCG05G016220 vs. NCBI nr
Match: XP_004145496.1 (nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypothetical protein Csa_012234 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 7.0e-76
Identity = 157/163 (96.32%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRDFAVVPEKVMDSVKTTLDNV QVQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +KLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Sbjct: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRK 162

[Close]

BLAST of ClCG05G016220 vs. NCBI nr
Match: KAG6591524.1 (Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.4 bits (747), Expect = 3.5e-75
Identity = 161/208 (77.40%), Postives = 172/208 (82.69%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRD AVVPEKVMDSVKTTL+NV QVQTHLIS LSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +K+RCSGVH DDHPI +ELERLSLYQDKLERFIGLSK PLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK--------VHCVGMLQI 180
           ATRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRK        V       +
Sbjct: 121 ATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFL 180

Query: 181 MTCRRTEPWISLWSVKTRFSCALNYPNS 201
               R    + LWS+K RF+CALN PNS
Sbjct: 181 EKAARGLNSLPLWSIKARFTCALNDPNS 207

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BLAST of ClCG05G016220 vs. NCBI nr
Match: XP_008452844.1 (PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa] >TYK20014.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.7e-74
Identity = 154/163 (94.48%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRDFAVVPEKVMDSVKTTLDNV  VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +KLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Sbjct: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRK 162

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BLAST of ClCG05G016220 vs. NCBI nr
Match: XP_038897508.1 (nuclear nucleic acid-binding protein C1D [Benincasa hispida])

HSP 1 Score: 287.7 bits (735), Expect = 8.6e-74
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRDFAVVPEKVMDSVK TLDNV QVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           A+VTTTLFA +KLRCSGV LDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA
Sbjct: 61  AKVTTTLFA-LKLRCSGVLLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Sbjct: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRK 162

[Close]

BLAST of ClCG05G016220 vs. NCBI nr
Match: XP_022976264.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima])

HSP 1 Score: 273.5 bits (698), Expect = 1.7e-69
Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRD AVVPEKVMDSVKTTL+NV QVQTHLIS LSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +K+RCSGVH DDHPI +ELERLSLYQDKLERFIGLSK PLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRK
Sbjct: 121 ATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRK 162

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BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08
Identity = 37/125 (29.60%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASV 71
           P ++ + +    ++VG V   L   +S++  E+L +++PL++A+  L+ A    +LF  +
Sbjct: 12  PTEIHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLF-WI 71

Query: 72  KLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPD 131
            L   G++  +HP+K ELER+  Y ++++          K++  L+  AA RFI+H+L D
Sbjct: 72  YLTTQGINPKEHPVKEELERIRGYMNRVKEI-----TDRKKAARLDKGAARRFIKHALCD 130

Query: 132 LTQEQ 137
            T E+
Sbjct: 132 PTSEE 130

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BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q32PE4 (Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-07
Identity = 36/128 (28.12%), Postives = 74/128 (57.81%), Query Frame = 0


Query: 2   EGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLA 61
           EG   D+   P ++ + + T  +++G V   L + +S++  E+L ++ PL++A+  L+ A
Sbjct: 4   EGINEDY---PVEIHEYLSTFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 63

Query: 62  RVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 121
               ++F  V L   GV+  +HP+K ELER+ +Y ++++          K++  L+  AA
Sbjct: 64  YTLNSMF-WVYLATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAGKLDRGAA 122

Query: 122 TRFIEHSL 130
           +RF++++L
Sbjct: 124 SRFVKNAL 122

[Close]

BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07
Identity = 34/118 (28.81%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASV 71
           P ++ D + T   ++  V   L + +S++  E+L +++PL++A+  L+ A    ++F  V
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMF-WV 70

Query: 72  KLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 130
            L   G++  +HP+K ELER+  Y +K++       A  K+++ L+  AA+RF+ ++L
Sbjct: 71  YLATQGINPKEHPVKQELERIRTYMNKVKEI-----ADKKKASKLDKGAASRFVRNAL 122

[Close]

BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07
Identity = 37/136 (27.21%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 2   EGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLA 61
           + AV D+   P ++ D++     ++  VQ  + + +S++  + L ++ PL++A+  L+ A
Sbjct: 4   DAAVEDY---PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSA 63

Query: 62  RVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 121
               ++F  + L   GV+  DHPIK ELER+  Y +K++      KA       ++ +AA
Sbjct: 64  YALNSMF-WMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-----AHIDKEAA 123

Query: 122 TRFIEHSLPDLTQEQK 138
           +RF+ ++L D   +++
Sbjct: 124 SRFVRNALWDADDKKR 130

[Close]

BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-07
Identity = 35/136 (25.74%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFASV 71
           P ++ +S+     ++G V   L + +S++  E+L ++ PL++A+  L+ A    ++F  V
Sbjct: 11  PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMF-WV 70

Query: 72  KLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPD 131
            L   GV+  +HP+K ELER+ +Y ++++          K++  L+  AA+RF++++L +
Sbjct: 71  YLATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAAKLDRGAASRFVKNALWE 130

Query: 132 LTQEQKLSMRDISRGK 148
             Q+   ++ +  + K
Sbjct: 131 PKQKNTPNVANKGKSK 140

[Close]

BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A0A0L118 (Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651890 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.4e-76
Identity = 157/163 (96.32%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRDFAVVPEKVMDSVKTTLDNV QVQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +KLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Sbjct: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRK 162

[Close]

BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 8.3e-75
Identity = 154/163 (94.48%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRDFAVVPEKVMDSVKTTLDNV  VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +KLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Sbjct: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRK 162

[Close]

BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 8.3e-75
Identity = 154/163 (94.48%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRDFAVVPEKVMDSVKTTLDNV  VQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +KLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRK
Sbjct: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRK 162

[Close]

BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A6J1IN17 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC111476708 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 8.1e-70
Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRD AVVPEKVMDSVKTTL+NV QVQTHLIS LSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +K+RCSGVH DDHPI +ELERLSLYQDKLERFIGLSK PLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRK
Sbjct: 121 ATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRK 162

[Close]

BLAST of ClCG05G016220 vs. ExPASy TrEMBL
Match: A0A6J1F700 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111442695 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.8e-69
Identity = 145/163 (88.96%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 1   MEGAVRDFAVVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEG VRD AVVPEKVMDSVKTTL+NV QVQTHLIS LSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFASVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQA 120
           ARVTTTLFA +K+RCSGVH DDHPI +ELERLSLY+DKLERFIGLSK PLKRSTTLNYQA
Sbjct: 61  ARVTTTLFA-LKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQA 120

Query: 121 ATRFIEHSLPDLTQEQKLSMRDISRGKGSKMKQLERNVQKKRK 164
           ATRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRK
Sbjct: 121 ATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRK 162

[Close]

BLAST of ClCG05G016220 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family )

HSP 1 Score: 152.1 bits (383), Expect = 5.2e-37
Identity = 78/153 (50.98%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 10  VVPEKVMDSVKTTLDNVGQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA 69
           VVPE  +++V  TL  + +++  L   L++AEPEVLA MQPLQRA++M LLA  TTTL+ 
Sbjct: 15  VVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAKTMHLLAEATTTLY- 74

Query: 70  SVKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 129
            ++LRC+GV  DDH +KSE+ER+++Y++K ++ +  SK PL+ +T LN QAATRFIEHSL
Sbjct: 75  ELRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVLNRQAATRFIEHSL 134

Query: 130 PDLTQEQKLSMRDISRGKGSKMKQLERNVQKKR 163
           PDLT  QK S+RD+S+G+ S+++  E + +K++
Sbjct: 135 PDLTSTQKQSIRDLSKGEKSRIRYSETSARKRK 166

The following BLAST results are available for this feature:

BLAST of ClCG05G016220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145496.1	7.0e-76	96.32	nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypotheti...	[more]
KAG6591524.1	3.5e-75	77.40	Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp....	[more]
XP_008452844.1	1.7e-74	94.48	PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1...	[more]
XP_038897508.1	8.6e-74	95.09	nuclear nucleic acid-binding protein C1D [Benincasa hispida]	[more]
XP_022976264.1	1.7e-69	89.57	nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima]	[more]

BLAST of ClCG05G016220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KPR1	2.2e-08	29.60	Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 S...	[more]
Q32PE4	2.5e-07	28.13	Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1	[more]
Q5ZHS3	3.2e-07	28.81	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q5XJ97	4.2e-07	27.21	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]
Q7TSU0	5.5e-07	25.74	Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D P...	[more]

BLAST of ClCG05G016220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L118	3.4e-76	96.32	Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651...	[more]
A0A5D3D8Y3	8.3e-75	94.48	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUS6	8.3e-75	94.48	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742...	[more]
A0A6J1IN17	8.1e-70	89.57	Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1F700	1.8e-69	88.96	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of ClCG05G016220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25080.1	5.2e-37	50.98	Sas10/Utp3/C1D family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 9..159
None	No IPR available	PANTHER	PTHR15341:SF3	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D	coord: 9..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G016220.2	ClCG05G016220.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding