ClCG05G011400 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G011400
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LINE-1 retrotransposable element ORF2 protein
Location	CG_Chr05: 13495392 .. 13500322 (-)
RNA-Seq Expression	ClCG05G011400
Synteny	ClCG05G011400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCCAACAGAAATAAAAATTCTGCCTACTTTCATAAAGTGTGTATGGCTCGTAGGCGATTCAACTTCATATGAAAGATACTGGATACCCAAGGTACTTATTAATATTCTAACAGCAACATTGAAAAGGCTTTTATTGATTACTTTTCTGATATTTACCGGGGTTAGTCTGAATGTTCTTGGCTAATTGGAAACTTAAATTGGAGGCCTATATCTGAAGCGCAAGCTTTTACTCTCATACAGTCCTTCTTACAGCCTGAAGTTCTAAACAGTATCAAATTACTTGGAAGCAATAAGACTTCGGGCCCTGACAATTTCACTATAGAATTCTTCAAAAAGTTTTGGAACATATTCATGTGTTCCATGACTCTTTCTTGAACAAGATTGTGAATAAATCTCTAAATGCCACATACATTGCCTTAATTCTAAAGAAGTCTCATTGCATTAGAGTATCTGACTTCCGCCCCATTAGTTTTACAACCAGAGTATACAAAATCCTGGCTAAAGTCCTATTAGAAAGATTAAAATTGGTCTTACCCTTAACAAGCTATGCAACAGTTTTCTTTTGTGCACGGTAGAAAAATTTTTGATCCGACTCTGATAGCTAATGAAGTTGTAGACTTTTGGCAATGTAGCAAAAAAAAAAAGGGGTGGTTATCAAACTTGATATAGAAAAAGCCTTTGACAAAGTTAACTGGGCTTTCCTACTATCTATGCTCCAAGTAAAAGGCTTCTTGGAAATATGGATTCACTGGATTAAAGCTTGCATTTATTTTGTTAACTATTCAATTATTCTAAATGGAAAACCGAGAGGTTATATCCAAGCAACTAGAGGTGTCCGACAAGAAGACTCCTTATCCCCCTTCCTATTATCGAAGAGGCTAAACAAAAAGATCTCATCTCTAGTTGTCGCTTTGAAAATGAACTCAACCATCTTCTATTTGCTGATGACATATTGCTTTTCTCTAGTACAGAGGTTGAAAAACTCAAGAATCTTCGCTATATTATATCTGCTTTTGAAAAGGCTTCAGAATTAAAAATTAACTTCTAGAAATCCTCCTTTTCTAAAATTAATATCGATGCTGATTTCATTGCTCGGGTTGAGAACATCTGGAGCTACACACCAACCACACTTCCTATTTTTTACTTGGGTATGCCATTAGGGGGAAATCCCAAATCACATGCTTTCCGGCTCCCTATTGTTGAAAAGATTGATAAGAAATTAGACTCTTGGAAATTTTCATACATCTCTAAAAGAGGACATTTAACTCTGCTACAAACCATTCTTGGTAACCTTCCTACTTACTATCTATCGTTATTTCAAGCTCATGTCTCCATTTACAAAGAAATTGAGAAACTGATGAGGAATTTTCTTTGGGAAGGTTCTGAGAAAAATGATGCATCACACCTTGTCCAACGGGATGTTGTTACCTCTCCTAAATCTATGGGTGGCTTGGGTATTGACAATCTAAAAGTCACAAATTCTACTCCATTATGCAAGTGGATATGGAGATATTTAAATGAAAAATAAAATCTCTGGAGAATTGCTATTGATGCCAAGTATAAAGTTGAACAACCGAGATCCTTTCTGAGTATTTGTAGCTACAAAAGCTCAAGATCCCTCTAGCTCAACATTGCCAAACTACAACATTATGTTCTTAATCACACTATCTGGCATATTGTGGATGGTAATGAAACTCTTTTTTGGTACCAAAATTGGACTAATGTTGGTTGTGTCTATCAAACTGCCAGCAGATTTTTTGCTCTAACTAATAAACCGTTGATATCTATTCAAGATGCTTTGGACTCTGAAGCCCATTGTTGGAGATTATTCCCTCGTCAGCCTTTATTATATAGGGAATTAGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGAAAAGATTTTCTACAATTTATCATCGGATGGTTATTTCTCAGTTAAAGCCATGAAAATTCTTCCTTTGGAGTATCTCCAAAATGGCCTCAACACTATGGATAAATATCAAAAAAGAACCCATCTATTTATCTTAATCCTAACTAGTGTGTTTTGTGCAGGAAAAAATCAGAATCTTTAGAGCACATCTTCATCTCATGTATCTTTACACGAAATATTTGGGATCGCTTATTACTAGGGGCCACTGCACAGCCAATATACTCCATAAATGAGCTTTGGCCCCAACTCAAAACGACTACAAAAGATCGTATCTTAAAGAGTAACATCATGACTGTCATTTTATGGTGTATTTGGCTCGAGCAGAATAAAAGAACTTTCCAAGGCATTGATAGAAATCACAGCCATCTCTGGGACGATATCATCTTGATTGTTGCCTTGAGGAGTACAAAAGCTCCTCTTTTTGTAATTATGATGTCTCTGCCATTGCTTTGAACTGGAAGCTTTTTTCGTAGCCCCTCTGCCTTTGTTGTTTCTGTTTTGATCTTGAGCTTTCCTCTAGCTCTTTGTATATACTCTCTTTCATTTGAATGAAGATTGTTAATGGTATCGGGAGTATGAGGAGGGTGCTAAGGAGGTGTCAACCTAGTTGGGATGTCTCGGTGCACCCCCTAATTTCTATTTCCTCTAGTATCATGTTCAAAAAAAAAAATCCAAAAAAATGGTAGAAAACACCTATAATGGATGATTTTTAAAAGCAGATCATTAATAATCGATATCTACACATGGAAAGTCAAATGTCTTATATTATGATTAATAATTACCAAACATTCAATCCTTATTGAGAGTTACTAATGCAACCAGTTATTTGTTTTTGCAAAATTGAGTATAGTCTAATTGACACAAAATTATATTAGCAATCAAAAAGTTTGTCGTTCGAATCTCTAATCCTTTTGTATTGAAAATATCAGTTATTTGTTGTTTACCATAAACAATTTGGATGATGTGGAAATTTTGTCTCAAAAGCATGTGACTCTAGCCAATCACATTGAATAAAAAATATGAATTGTATTGAGTTTTAAGACATTGTTTTAACTTAAAAGTATAAAGGTACGGACGTTTATCTTTTATGGCTTGTTTCGTATGCTCAACTTTTTTTTATTTTTGTTTTTTTTTTTTTTTATTCAATGTCTCTATTTGGTTGGCTTATTTATATATTATAAAAAAGATTAAATTATTTAAAAAATTAAAAAATACTCTTAAAATTTTGGAAAGTTTCAACAATAATATTCTTAAACTTTAAAAAAATTTAAAATTAAAGAATATCCATATCATAATTTTGGATGGAAATCGTTAATATTATGTTTCAAATATACTTCTAACTTCCAAGAGTTATAGTAATATCTTTAAACTTTAAAATGAAAATAGTTATAAAATATCTCACTGTTAGATATAGATTTAAACCATTAGTAACTCATTTAAAATATACCTCATAAACCTTCCAGCCGTTGCATTAGTGGACCTTTAAAAACAAATTTTTACTATTAATATACGGACAAAAATGGTTTATCTACCTTGTTCACCTCTCTTTCTATTTCAGTTGTCTATGACCTAACAATTCCTTCTTTTTTTTCTCTCTTCTTCAATACCCTCTTACTTTCCTTCTTCCATTTTCTAGTCTCTAAAACTATCTCGTTCAATCAAGGTATATAGGCTATGGCATGAAGAAAAAGAATAATGGAACAGAAACCTTAAGACTTAAAAGTTTAAATAAGGTTTTGTGTTAGTAGTTAAGCATGTGTTGCTAAGGGTGTATTTGGAATACATTTTTAAGTGTTTAATTTAAAAAAGTAAGTCATTTTGGAAAAAAAAAATTGGAGTGTTTGGCAACCACTCAAAATAGATTTTGAAGTGTATTTTAAGTGGTACTTCTTATCAAAAGAGTTTAAATAAAAATGAGTTTTTTGAAAAACACTTTTTTCTCAAGTCAATCCAAACGGGCCTTAAATCGTTAGATTTTAATACACAAAAAAGGACATGTTATGAATTTGGATCCTAATTTTGAGAAAAGCCAAGTAGGAAAAAAATAAAACATGTGTGTTATAGAAAAAATTAGTATGACCGATGAGAGAGCCCGTGAGAGCTCAGTGGGACTCGTGAGTTGAGAGCTAGGAGAGAGCTCGAGCTTGAGGTAAGCCTAAAGGAACTCAAAGGAAGCCTAGGAGAGAGCTCTTAAGTGGAGCTAAGAATCTAGGAGAGAGCTTAATAGAACTCACGGGAGAGCCCAAGAGAGCTTAGAGAGAGCTCAACGGGACCCATGAGGTAAGTTTAGTGGAGAGCTCAGAGAAGCCTACGAGACAGCTCAAGAGGACGCACGAGAGAGGTTAACCCGTGAGGTAAGCTTAGTGAAGAGCTTATAGGAGCCTAGGAGAGAGAGCTCTAGAGGACCTGCTAGAGAGCCTAACCCGTGAGGTAATCTTAGTGGAGAGCTTAGAGGATCCTGGGAGAGAGCTCAAAAGAACTCATGGGAGAGCCTGAGAGAGTTCAGTGGGACTCGTTAGGTAAGCTTAGATGACCCATGGAAGATCCTAGTAAGCTCGATTCAATTGAAAAAGCAAGTCGATCTAAGAAAATAGGTCATTCTGAGAAAGGAGGTCGACCTGACGAGTCGAGCTAAGAAACGAGGTCAACCTAAGAAAGGAGGTCAACCTGGTAGCTCAAGCTAAGAAATGAGATCGATTTAAGAAAGGAGGTTGACCTGGTAAATCGAGCTAGGAAAGCAAGTTATGCATGGTTTTGTCATGCATTGGCTATGTATTGTGGTCAGATAACCAGATGTTAAAGGTTTACCCAAGAGTCAAACACATTTTATGGTTGAGGGGTGTAACGACTTTAACAATAATGACTAGATGGGTAACGGTTGAGGGAAGTCTGATAGTGGCTTGGAAGCTGAAGGGTCATGTCAGCTTTAGTTATGAAGAGCTCGACCTATATAATCTTTAA

mRNA sequence

ATGACCCCAACAGAAATAAAAATTCTGCCTACTTTCATAAAGTGTGTATGGCTCGTAGGCGATTCAACTTCATATGAAAGATACTGGATACCCAAGTCTGAATGTTCTTGGCTAATTGGAAACTTAAATTGGAGGCCTATATCTGAAGCGCAAGCTTTTACTCTCATACAGTCCTTCTTACAGCCTGAAATTGTGAATAAATCTCTAAATGCCACATACATTGCCTTAATTCTAAAGAAGTCTCATTGCATTAGAGTATCTGACTTCCGCCCCATTAGTTTTACAACCAGAGCTAAACAAAAAGATCTCATCTCTAGTTGTCGCTTTGAAAATGAACTCAACCATCTTCTATTTGCTGATGACATATTGCTTTTCTCTAGTACAGAGAACATCTGGAGCTACACACCAACCACACTTCCTATTTTTTACTTGGGTATGCCATTAGGGGGAAATCCCAAATCACATGCTTTCCGGCTCCCTATTGTTGAAAAGATTGATAAGAAATTAGACTCTTGGAAATTTTCATACATCTCTAAAAGAGGACATTTAACTCTGCTACAAACCATTCTTGGTAACCTTCCTACTTACTATCTATCGTTATTTCAAGCTCATGTCTCCATTTACAAAGAAATTGAGAAACTGATGAGGAATTTTCTTTGGGAAGGTTCTGAGAAAAATGATGCATCACACCTTGTCCAACGGGATGTTGTTACCTCTCCTAAATCTATGGGTGGCTTGGATGCTTTGGACTCTGAAGCCCATTGTTGGAGATTATTCCCTCGTCAGCCTTTATTATATAGGGAATTAGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGAAAAGATTTTCTACAATTTATCATCGGATGGTTATTTCTCAGTTAAAGCCATGAAAATTCTTCCTTTGGAGAAAAAATCAGAATCTTTAGAGCACATCTTCATCTCATGTATCTTTACACGAAATATTTGGGATCGCTTATTACTAGGGGCCACTGCACAGCCAATATACTCCATAAATGAGCTTTGGCCCCAACTCAAAACGACTACAAAAGATCGTATCTTAAAGAGTAACATCATGACTGTCATTTTATGGTGTATTTGGCTCGAGCAGAATAAAAGAACTTTCCAAGGCATTGATAGAAATCACAGCCATCTCTGGGACGATATCATCTTGATTGTTGCCTTGAGGAAGCTCAGTGGGACTCGTGAGTTGAGAGCTAGGAGAGAGCTCGAGCTTGAGAACTCACGGGAGAGCCCAAGAGAGCTTAGAGAGAGCTCAACGGGACCCATGAGAGCTTATAGGAGCCTAGGAGAGAGAGCTCTAGAGGACCTGCTAGAGAGCCTAACCCGTGAGGTCATTCTGAGAAAGGAGGTCGACCTGACGAGTCGAGCTAAGAAACGAGGTCAACCTAAGAAAGGAGGTCAACCTGATAACCAGATGTTAAAGGTTTACCCAAGAGTCAAACACATTTTATGGTTGAGGGGTGTAACGACTTTAACAATAATGACTAGATGGGTAACGGTTGAGGGAAGTCTGATAGTGGCTTGGAAGCTGAAGGGTCATGTCAGCTTTAGTTATGAAGAGCTCGACCTATATAATCTTTAA

Coding sequence (CDS)

ATGACCCCAACAGAAATAAAAATTCTGCCTACTTTCATAAAGTGTGTATGGCTCGTAGGCGATTCAACTTCATATGAAAGATACTGGATACCCAAGTCTGAATGTTCTTGGCTAATTGGAAACTTAAATTGGAGGCCTATATCTGAAGCGCAAGCTTTTACTCTCATACAGTCCTTCTTACAGCCTGAAATTGTGAATAAATCTCTAAATGCCACATACATTGCCTTAATTCTAAAGAAGTCTCATTGCATTAGAGTATCTGACTTCCGCCCCATTAGTTTTACAACCAGAGCTAAACAAAAAGATCTCATCTCTAGTTGTCGCTTTGAAAATGAACTCAACCATCTTCTATTTGCTGATGACATATTGCTTTTCTCTAGTACAGAGAACATCTGGAGCTACACACCAACCACACTTCCTATTTTTTACTTGGGTATGCCATTAGGGGGAAATCCCAAATCACATGCTTTCCGGCTCCCTATTGTTGAAAAGATTGATAAGAAATTAGACTCTTGGAAATTTTCATACATCTCTAAAAGAGGACATTTAACTCTGCTACAAACCATTCTTGGTAACCTTCCTACTTACTATCTATCGTTATTTCAAGCTCATGTCTCCATTTACAAAGAAATTGAGAAACTGATGAGGAATTTTCTTTGGGAAGGTTCTGAGAAAAATGATGCATCACACCTTGTCCAACGGGATGTTGTTACCTCTCCTAAATCTATGGGTGGCTTGGATGCTTTGGACTCTGAAGCCCATTGTTGGAGATTATTCCCTCGTCAGCCTTTATTATATAGGGAATTAGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGAAAAGATTTTCTACAATTTATCATCGGATGGTTATTTCTCAGTTAAAGCCATGAAAATTCTTCCTTTGGAGAAAAAATCAGAATCTTTAGAGCACATCTTCATCTCATGTATCTTTACACGAAATATTTGGGATCGCTTATTACTAGGGGCCACTGCACAGCCAATATACTCCATAAATGAGCTTTGGCCCCAACTCAAAACGACTACAAAAGATCGTATCTTAAAGAGTAACATCATGACTGTCATTTTATGGTGTATTTGGCTCGAGCAGAATAAAAGAACTTTCCAAGGCATTGATAGAAATCACAGCCATCTCTGGGACGATATCATCTTGATTGTTGCCTTGAGGAAGCTCAGTGGGACTCGTGAGTTGAGAGCTAGGAGAGAGCTCGAGCTTGAGAACTCACGGGAGAGCCCAAGAGAGCTTAGAGAGAGCTCAACGGGACCCATGAGAGCTTATAGGAGCCTAGGAGAGAGAGCTCTAGAGGACCTGCTAGAGAGCCTAACCCGTGAGGTCATTCTGAGAAAGGAGGTCGACCTGACGAGTCGAGCTAAGAAACGAGGTCAACCTAAGAAAGGAGGTCAACCTGATAACCAGATGTTAAAGGTTTACCCAAGAGTCAAACACATTTTATGGTTGAGGGGTGTAACGACTTTAACAATAATGACTAGATGGGTAACGGTTGAGGGAAGTCTGATAGTGGCTTGGAAGCTGAAGGGTCATGTCAGCTTTAGTTATGAAGAGCTCGACCTATATAATCTTTAA

Protein sequence

MTPTEIKILPTFIKCVWLVGDSTSYERYWIPKSECSWLIGNLNWRPISEAQAFTLIQSFLQPEIVNKSLNATYIALILKKSHCIRVSDFRPISFTTRAKQKDLISSCRFENELNHLLFADDILLFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGLDALDSEAHCWRLFPRQPLLYRELEAWNSLTSGWRQPTIPTNPTDIEKIFYNLSSDGYFSVKAMKILPLEKKSESLEHIFISCIFTRNIWDRLLLGATAQPIYSINELWPQLKTTTKDRILKSNIMTVILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVALRKLSGTRELRARRELELENSRESPRELRESSTGPMRAYRSLGERALEDLLESLTREVILRKEVDLTSRAKKRGQPKKGGQPDNQMLKVYPRVKHILWLRGVTTLTIMTRWVTVEGSLIVAWKLKGHVSFSYEELDLYNL

Homology

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BLAST of ClCG05G011400 vs. NCBI nr
Match: RVW35813.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 150.2 bits (378), Expect = 5.1e-32
Identity = 94/298 (31.54%), Postives = 156/298 (52.35%), Query Frame = 0


Query: 140 PIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLS 199
           P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +TL+Q+ L ++P+Y+LS
Sbjct: 108 PLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKTYLSLGGRITLIQSCLSHIPSYFLS 167

Query: 200 LFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGL----DALDSEA-- 259
           LF+  VSI  +IEK+ R+FLW G  +    HL++ +VV+ P+ MGGL     ++ + A  
Sbjct: 168 LFKIPVSIASKIEKMQRDFLWSGVGEGKRDHLIRWEVVSRPREMGGLGFGKTSMRNSALL 227

Query: 260 --HCWRLFPRQPL-LYRELEA--WNSLTSGW---------------RQPTIPTNPTDIEK 319
               WR FPR+   L+ ++ A  + +  +GW                  ++  +P+  + 
Sbjct: 228 GKWLWR-FPRERSGLWHKVIASIYGTHPNGWDANMGEIDLLQRLMSSLHSVLLSPSSSDS 287

Query: 320 IFYNLSSDGYFSVKAMKILPLEKKSESLEHIFISCIFTRNI--------WDRLLLGATAQ 379
             ++LSS G FSVK+     L K S  L  +    +++  +        W   L+G    
Sbjct: 288 RAWSLSSSGSFSVKSF-FYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLFNLVGVIWV 347

Query: 380 PIYSINEL----WPQLKTTTKDRILKSNIMTVILWCIWLEQNKRTFQGIDRNHSHLWD 400
           P  SI ++    +  L  + + +IL       ++W +W E+N R F+   R    +WD
Sbjct: 348 PPRSIEDMLVISFRGLGNSVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWD 403

[Close]

BLAST of ClCG05G011400 vs. NCBI nr
Match: RVX23238.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 146.0 bits (367), Expect = 9.7e-31
Identity = 89/289 (30.80%), Postives = 144/289 (49.83%), Query Frame = 0


Query: 141 IFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSL 200
           I YLG+PLGGNPK+  F  P++E+I  +LD W+ +Y+S RG +T +Q+ L +LP Y+LSL
Sbjct: 272 ILYLGLPLGGNPKACGFWNPVIERISSRLDGWQKAYLSFRGRITPIQSCLTHLPCYFLSL 331

Query: 201 FQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGLDAL----------- 260
           F+   S+  +IE+L R+FLW G  +    HLV+  VV S   +  L  L           
Sbjct: 332 FKIPASVATKIERLQRDFLWSGIGEGKRDHLVREMVVESKGHIAVLGRLLHKSFRSFPCL 391

Query: 261 ----DSEAHCWRLFPRQPLLYRELEAWNSLTSGWRQPTIPTNPTDIEKIFYNLSSDGYFS 320
                +    W L  R+ L   E+E    L     +  +  +P+D    F   +S   F 
Sbjct: 392 LVLAPTRPFSWNLNFRRNLSDPEIEDLEGLMRSLDE--LYLSPSDFPSKFV-WNSQVPFK 451

Query: 321 VKA-MKILPLEKKSESLEHIFISCIFTRNIWDRLLLGA-----TAQPIYSINEL-WPQLK 380
           VK+ ++++  +K  ES +H+F+ C  T  +W RL   A       + IY +  + +    
Sbjct: 452 VKSFVRLVAYKKHGESADHLFLHCSLTIGLWHRLFQLAKMDWVPPRSIYDMMSIKFKGFS 511

Query: 381 TTTKDRILKSNIMTVILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVAL 408
            + +  +L       ++  +W E+N R F+   RN   LWD I+ + +L
Sbjct: 512 NSKRGIVLWQATSIALIRVVWWERNVRIFEDKARNSEFLWDSIVFLASL 557

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BLAST of ClCG05G011400 vs. NCBI nr
Match: RVW87853.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-30
Identity = 102/377 (27.06%), Postives = 176/377 (46.68%), Query Frame = 0


Query: 97  RAKQKDLISSCRF-ENELNHLLFADDILLFSST--ENIWSYTPTTL-------------P 156
           +A++++++   +   N++ HL FADD + FSS+  E++ +     L             P
Sbjct: 117 KAEERNVLEGFKVGRNKVFHLQFADDTIFFSSSREEDMMTLKNVLLVLAEMLDCKAAGWP 176

Query: 157 IFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSL 216
           I YLG+PLGGNPK+  F  P++E+I ++LD W+ +Y+S  G +TL+Q+ L ++P Y+LSL
Sbjct: 177 ILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSL 236

Query: 217 FQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGLDALDSEAHCW---- 276
           F+   ++  +IE++ R+FLW G  +    HLV  DVV        L    + ++ W    
Sbjct: 237 FKIPAAVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVI-------LSIYGTHSNGWDVNN 296

Query: 277 --RLFPRQP-----LLYR------------ELEAWNSLTSGWRQPTIPTNPTDI------ 336
             R   R P     L+Y+            E+E  + +T G       +N  D       
Sbjct: 297 IVRWSHRCPWKAIALVYQEFSKFTRFVVVMEIEFGSGMTCGGGNNLWVSNIQDYLERSRG 356

Query: 337 ---------------EKIFYNLSSDGYFSVKAMKILPL-EKKSESLEHIFISCIFTRNIW 396
                          +K  + LS    +   +  I  L  K  E+++H+F+ C  T  +W
Sbjct: 357 PHAVFRSSTHFIFVPDKRSWFLSPSETYKALSPDICKLCMKHGETVDHLFLHCSLTIGLW 416

Query: 397 DRLLLGATAQPI--YSINEL----WPQLKTTTKDRILKSNIMTVILWCIWLEQNKRTFQG 407
            RL   A    +   SI+++    +     + +  +L  N    ++W +W E+N R F+ 
Sbjct: 417 HRLFQSAKMDWVSPRSISDMLSSNFNGFGFSKRGIVLWQNACIALMWVVWRERNARIFED 476

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BLAST of ClCG05G011400 vs. NCBI nr
Match: TYK05764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-29
Identity = 96/261 (36.78%), Postives = 119/261 (45.59%), Query Frame = 0


Query: 64  IVNKSLNATYIALILKKSHCIRVSDFRPISFTT------------RAKQK---------- 123
           I+N+++N T IALI KK  C   +D+RPIS TT            R K+           
Sbjct: 53  IINEAVNVTNIALIAKKDKCSAAADYRPISLTTSLYKLIAKVIAERLKETLPYTVSKNQM 112

Query: 124 -----------DLISSCRFENELN--HLLFADDILLF-----SSTENI------------ 183
                      D I   R  N LN  HLLFADDILLF      S  N+            
Sbjct: 113 AFIKGLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLALG 172

Query: 184 --------------------------WSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKI 243
                                     W  +    P  YLG+PL G P S  F   I EK+
Sbjct: 173 LNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEKV 232

Query: 244 DKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEK 247
            KKL +WK+S +SK   +TL+ + L +LPTY LS+F+A  SIYK IEK  RNFLW  S +
Sbjct: 233 SKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSNE 292

[Close]

BLAST of ClCG05G011400 vs. NCBI nr
Match: TYK10356.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-29
Identity = 157/620 (25.32%), Postives = 219/620 (35.32%), Query Frame = 0


Query: 34  ECSWLIGNLNWRPISEAQAFTLIQSFLQPE------------------------------ 93
           E  WLI NL+W PIS +QA  L  SF + E                              
Sbjct: 252 ENPWLIENLSWSPISTSQAQNLCSSFSEEEIHSALTAFSNNKSPGPDGFTMEFFKAAWFV 311

Query: 94  ----------------IVNKSLNATYIALILKKSHCIRVSDFRPISFTT----------- 153
                           I+NK++N T IALI KK  C   +D+RPIS TT           
Sbjct: 312 LKDDIFNIFRDFHTNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIA 371

Query: 154 --------------------------------------RAKQ--------------KDLI 213
                                                 R K+              K  I
Sbjct: 372 ERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFGYPIKWRRWIKACI 431

Query: 214 SSCRF------------ENELNHLLFADDILLFSSTENI--------------------- 273
           SS ++            E+ L +L    ++   +S  NI                     
Sbjct: 432 SSVQYSIIINGRPREDDEHSLQNLKNIINLFQLASGLNINLNKSTISPINIDAARTDQIA 491

Query: 274 --WSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTI 333
             W  T    PI YLG+PLGG P + AF   I EKI KKL SWK+S +SK G +TL+++ 
Sbjct: 492 SQWGITTKFFPINYLGVPLGGKPTTKAFWKNIDEKISKKLASWKYSMLSKGGKITLIKST 551

Query: 334 LGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDV------------- 393
           L +LPTY LS+F+A VS YK IEK  RNF W+   +    HLV   +             
Sbjct: 552 LASLPTYQLSIFKAPVSTYKSIEKSWRNFFWKNLSETHKLHLVSWKIKNGRNFSFWHSHW 611

Query: 394 -VTSPKSM--------------GGLDALDSEAHCWRLFPRQPLLYRELEAW----NSLTS 408
              SP S+                 D  ++    W L PR+ L   E   W    NSL +
Sbjct: 612 HQNSPLSLHYPRLFALSTNQDNSIKDMWNTTLMDWDLKPRRQLRDWEHPLWAELKNSLNA 671

[Close]

BLAST of ClCG05G011400 vs. ExPASy TrEMBL
Match: A0A438DK26 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_496 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-32
Identity = 94/298 (31.54%), Postives = 156/298 (52.35%), Query Frame = 0


Query: 140 PIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLS 199
           P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +TL+Q+ L ++P+Y+LS
Sbjct: 108 PLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKTYLSLGGRITLIQSCLSHIPSYFLS 167

Query: 200 LFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGL----DALDSEA-- 259
           LF+  VSI  +IEK+ R+FLW G  +    HL++ +VV+ P+ MGGL     ++ + A  
Sbjct: 168 LFKIPVSIASKIEKMQRDFLWSGVGEGKRDHLIRWEVVSRPREMGGLGFGKTSMRNSALL 227

Query: 260 --HCWRLFPRQPL-LYRELEA--WNSLTSGW---------------RQPTIPTNPTDIEK 319
               WR FPR+   L+ ++ A  + +  +GW                  ++  +P+  + 
Sbjct: 228 GKWLWR-FPRERSGLWHKVIASIYGTHPNGWDANMGEIDLLQRLMSSLHSVLLSPSSSDS 287

Query: 320 IFYNLSSDGYFSVKAMKILPLEKKSESLEHIFISCIFTRNI--------WDRLLLGATAQ 379
             ++LSS G FSVK+     L K S  L  +    +++  +        W   L+G    
Sbjct: 288 RAWSLSSSGSFSVKSF-FYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLFNLVGVIWV 347

Query: 380 PIYSINEL----WPQLKTTTKDRILKSNIMTVILWCIWLEQNKRTFQGIDRNHSHLWD 400
           P  SI ++    +  L  + + +IL       ++W +W E+N R F+   R    +WD
Sbjct: 348 PPRSIEDMLVISFRGLGNSVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWD 403

[Close]

BLAST of ClCG05G011400 vs. ExPASy TrEMBL
Match: A0A438KPW8 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_125 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.7e-31
Identity = 89/289 (30.80%), Postives = 144/289 (49.83%), Query Frame = 0


Query: 141 IFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSL 200
           I YLG+PLGGNPK+  F  P++E+I  +LD W+ +Y+S RG +T +Q+ L +LP Y+LSL
Sbjct: 272 ILYLGLPLGGNPKACGFWNPVIERISSRLDGWQKAYLSFRGRITPIQSCLTHLPCYFLSL 331

Query: 201 FQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGLDAL----------- 260
           F+   S+  +IE+L R+FLW G  +    HLV+  VV S   +  L  L           
Sbjct: 332 FKIPASVATKIERLQRDFLWSGIGEGKRDHLVREMVVESKGHIAVLGRLLHKSFRSFPCL 391

Query: 261 ----DSEAHCWRLFPRQPLLYRELEAWNSLTSGWRQPTIPTNPTDIEKIFYNLSSDGYFS 320
                +    W L  R+ L   E+E    L     +  +  +P+D    F   +S   F 
Sbjct: 392 LVLAPTRPFSWNLNFRRNLSDPEIEDLEGLMRSLDE--LYLSPSDFPSKFV-WNSQVPFK 451

Query: 321 VKA-MKILPLEKKSESLEHIFISCIFTRNIWDRLLLGA-----TAQPIYSINEL-WPQLK 380
           VK+ ++++  +K  ES +H+F+ C  T  +W RL   A       + IY +  + +    
Sbjct: 452 VKSFVRLVAYKKHGESADHLFLHCSLTIGLWHRLFQLAKMDWVPPRSIYDMMSIKFKGFS 511

Query: 381 TTTKDRILKSNIMTVILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVAL 408
            + +  +L       ++  +W E+N R F+   RN   LWD I+ + +L
Sbjct: 512 NSKRGIVLWQATSIALIRVVWWERNVRIFEDKARNSEFLWDSIVFLASL 557

[Close]

BLAST of ClCG05G011400 vs. ExPASy TrEMBL
Match: A0A438HTQ7 (Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_176 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-30
Identity = 102/377 (27.06%), Postives = 176/377 (46.68%), Query Frame = 0


Query: 97  RAKQKDLISSCRF-ENELNHLLFADDILLFSST--ENIWSYTPTTL-------------P 156
           +A++++++   +   N++ HL FADD + FSS+  E++ +     L             P
Sbjct: 117 KAEERNVLEGFKVGRNKVFHLQFADDTIFFSSSREEDMMTLKNVLLVLAEMLDCKAAGWP 176

Query: 157 IFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSL 216
           I YLG+PLGGNPK+  F  P++E+I ++LD W+ +Y+S  G +TL+Q+ L ++P Y+LSL
Sbjct: 177 ILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSL 236

Query: 217 FQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGLDALDSEAHCW---- 276
           F+   ++  +IE++ R+FLW G  +    HLV  DVV        L    + ++ W    
Sbjct: 237 FKIPAAVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVI-------LSIYGTHSNGWDVNN 296

Query: 277 --RLFPRQP-----LLYR------------ELEAWNSLTSGWRQPTIPTNPTDI------ 336
             R   R P     L+Y+            E+E  + +T G       +N  D       
Sbjct: 297 IVRWSHRCPWKAIALVYQEFSKFTRFVVVMEIEFGSGMTCGGGNNLWVSNIQDYLERSRG 356

Query: 337 ---------------EKIFYNLSSDGYFSVKAMKILPL-EKKSESLEHIFISCIFTRNIW 396
                          +K  + LS    +   +  I  L  K  E+++H+F+ C  T  +W
Sbjct: 357 PHAVFRSSTHFIFVPDKRSWFLSPSETYKALSPDICKLCMKHGETVDHLFLHCSLTIGLW 416

Query: 397 DRLLLGATAQPI--YSINEL----WPQLKTTTKDRILKSNIMTVILWCIWLEQNKRTFQG 407
            RL   A    +   SI+++    +     + +  +L  N    ++W +W E+N R F+ 
Sbjct: 417 HRLFQSAKMDWVSPRSISDMLSSNFNGFGFSKRGIVLWQNACIALMWVVWRERNARIFED 476

[Close]

BLAST of ClCG05G011400 vs. ExPASy TrEMBL
Match: A0A5D3CJ08 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00340 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-30
Identity = 157/620 (25.32%), Postives = 219/620 (35.32%), Query Frame = 0


Query: 34  ECSWLIGNLNWRPISEAQAFTLIQSFLQPE------------------------------ 93
           E  WLI NL+W PIS +QA  L  SF + E                              
Sbjct: 252 ENPWLIENLSWSPISTSQAQNLCSSFSEEEIHSALTAFSNNKSPGPDGFTMEFFKAAWFV 311

Query: 94  ----------------IVNKSLNATYIALILKKSHCIRVSDFRPISFTT----------- 153
                           I+NK++N T IALI KK  C   +D+RPIS TT           
Sbjct: 312 LKDDIFNIFRDFHTNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIA 371

Query: 154 --------------------------------------RAKQ--------------KDLI 213
                                                 R K+              K  I
Sbjct: 372 ERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFGYPIKWRRWIKACI 431

Query: 214 SSCRF------------ENELNHLLFADDILLFSSTENI--------------------- 273
           SS ++            E+ L +L    ++   +S  NI                     
Sbjct: 432 SSVQYSIIINGRPREDDEHSLQNLKNIINLFQLASGLNINLNKSTISPINIDAARTDQIA 491

Query: 274 --WSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTI 333
             W  T    PI YLG+PLGG P + AF   I EKI KKL SWK+S +SK G +TL+++ 
Sbjct: 492 SQWGITTKFFPINYLGVPLGGKPTTKAFWKNIDEKISKKLASWKYSMLSKGGKITLIKST 551

Query: 334 LGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDV------------- 393
           L +LPTY LS+F+A VS YK IEK  RNF W+   +    HLV   +             
Sbjct: 552 LASLPTYQLSIFKAPVSTYKSIEKSWRNFFWKNLSETHKLHLVSWKIKNGRNFSFWHSHW 611

Query: 394 -VTSPKSM--------------GGLDALDSEAHCWRLFPRQPLLYRELEAW----NSLTS 408
              SP S+                 D  ++    W L PR+ L   E   W    NSL +
Sbjct: 612 HQNSPLSLHYPRLFALSTNQDNSIKDMWNTTLMDWDLKPRRQLRDWEHPLWAELKNSLNA 671

[Close]

BLAST of ClCG05G011400 vs. ExPASy TrEMBL
Match: A0A5D3C384 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002530 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-30
Identity = 96/261 (36.78%), Postives = 119/261 (45.59%), Query Frame = 0


Query: 64  IVNKSLNATYIALILKKSHCIRVSDFRPISFTT------------RAKQK---------- 123
           I+N+++N T IALI KK  C   +D+RPIS TT            R K+           
Sbjct: 53  IINEAVNVTNIALIAKKDKCSAAADYRPISLTTSLYKLIAKVIAERLKETLPYTVSKNQM 112

Query: 124 -----------DLISSCRFENELN--HLLFADDILLF-----SSTENI------------ 183
                      D I   R  N LN  HLLFADDILLF      S  N+            
Sbjct: 113 AFIKGLLDSLGDKIKGVRMNNNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLALG 172

Query: 184 --------------------------WSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKI 243
                                     W  +    P  YLG+PL G P S  F   I EK+
Sbjct: 173 LNVNLNKSTISSINVDVARTNQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEKV 232

Query: 244 DKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEK 247
            KKL +WK+S +SK   +TL+ + L +LPTY LS+F+A  SIYK IEK  RNFLW  S +
Sbjct: 233 SKKLSNWKYSLLSKGEKITLINSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSNE 292

The following BLAST results are available for this feature:

BLAST of ClCG05G011400 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW35813.1	5.1e-32	31.54	putative ribonuclease H protein [Vitis vinifera]	[more]
RVX23238.1	9.7e-31	30.80	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW87853.1	2.2e-30	27.06	putative mitochondrial protein [Vitis vinifera]	[more]
TYK05764.1	1.1e-29	36.78	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK10356.1	1.1e-29	25.32	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of ClCG05G011400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G011400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438DK26	2.5e-32	31.54	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_496 P...	[more]
A0A438KPW8	4.7e-31	30.80	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438HTQ7	1.0e-30	27.06	Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_176 PE=4 ...	[more]
A0A5D3CJ08	5.2e-30	25.32	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C384	5.2e-30	36.78	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of ClCG05G011400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 111..378
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 111..378

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G011400.1	ClCG05G011400.1	mRNA